mRNA_E-fasciculatus_F_contig13851.2838.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13851.2838.1
Unique NamemRNA_E-fasciculatus_F_contig13851.2838.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13851.2838.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13851contigE-fasciculatus_F_contig13851:355..2753 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size216
Cds size216
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13851.2838.1prot_E-fasciculatus_F_contig13851.2838.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13851 355..2753 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927879.0983083-CDS-E-fasciculatus_F_contig13851:354..4141622927879.0983083-CDS-E-fasciculatus_F_contig13851:354..414Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13851 355..414 +
1695995734.789046-CDS-E-fasciculatus_F_contig13851:354..4141695995734.789046-CDS-E-fasciculatus_F_contig13851:354..414Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13851 355..414 +
1622927879.1096685-CDS-E-fasciculatus_F_contig13851:854..9501622927879.1096685-CDS-E-fasciculatus_F_contig13851:854..950Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13851 855..950 +
1695995734.8050606-CDS-E-fasciculatus_F_contig13851:854..9501695995734.8050606-CDS-E-fasciculatus_F_contig13851:854..950Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13851 855..950 +
1622927879.1282883-CDS-E-fasciculatus_F_contig13851:2693..27531622927879.1282883-CDS-E-fasciculatus_F_contig13851:2693..2753Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13851 2694..2753 +
1695995734.8138816-CDS-E-fasciculatus_F_contig13851:2693..27531695995734.8138816-CDS-E-fasciculatus_F_contig13851:2693..2753Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13851 2694..2753 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13851.2838.1

>prot_E-fasciculatus_F_contig13851.2838.1 ID=prot_E-fasciculatus_F_contig13851.2838.1|Name=mRNA_E-fasciculatus_F_contig13851.2838.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=72bp
TSVPLGSLPPTPTRPPVEPETPGSTTASPTIPPVTTSAPTESLPTPAPVV
PATPGPLGSLPPTPTRPPVEPE
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mRNA from alignment at E-fasciculatus_F_contig13851:355..2753+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13851.2838.1 ID=mRNA_E-fasciculatus_F_contig13851.2838.1|Name=mRNA_E-fasciculatus_F_contig13851.2838.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2399bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13851:355..2753+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACATCCGTTCCCCTGGGATCACTACCACCAACTCCAACTCGTCCTCCAGT
GGAACCTGAGGTAAGAGGTCACCCGTACACGACAGAAGTGTTGGTCGTGC
ACGTCGAGTGTGGACAAATTGTCGACAACGGGCAAAGATTCGTGGTCGTG
TGCATGAATGACTTCGTGATCCGTGTTGGGGGATGATTCCTTCGTCAATG
GTCATGGTTGTTGATTCCGCAAATGTGGGACGCTTCGCATGGTACATGTT
CGCAAGTCCTTCCAGGCTGGACGAACCTTTGTGGTCGTGTAAGGGACTCT
CCCATTTTGATCTGCGTTTGGGAAGAACCGCAAGTCAACCGCCCTGATCC
CGCCGCAGAGAATGTTAATCGTATCACATCGGAGTCATGTCGGCGACCTG
ACAACGCCGGGCACCTGTTGCATTTCCGGAAGACGTGCCGATTTGATCAG
AGAACGGCCTTGCTTCGGTGCGCTGTCTCTTCGTGTGCTCTCGCCAGCAG
ACACCCGGGTCGACAACCGCTTCACCTACAATCCCTCCCGTGACAACAAG
TGCTCCCACGGAATCACTGCCAACACCTGCACCAGTCGTCCCAGCTGTAA
GTCGTCACTCGGACACCTAGGAAGCCTTTGCCGTGCACGCCGACCAAGTG
CAGACTCGACTTAACAGGCCCTGCAAAGATCCGTCATCGTGTGCATGAAT
GACCTCTGGATACGCGTTGGCGGACAATCATTTGTCAATGTTCGTGGTTG
TCGCCGCATCGAATGTGGTACACATAACGCTGGAAGTCTTTGTCGTGCAC
GCCCACCGAGTGTAGACGAGCCCTTCGAGGCTCGTCAAAGGATCTTAGCC
GTGTGCACGAATGACGTCTAGACCCGCGTAGGGGGAGAATGTTTGGTCAA
CGGTCATGGTTGATGCCGATTCAAATGTGGTACGTATTACCTAGGAATAT
TGTTGTGGACGGCAGCCGAGCAAAGACGAGCCTTCGAGGCTGGGCAATGG
TTCATGGTCGTGTGAGTGAATGGCCCCCTTCGATCCGCGGGTGAAGACGA
AAATCCTGTCAACGGTCCTGATGTCGCCGTAGAATATGTTCTGAGAATGA
CCTTGGTTCGGTGCGCTGCCTCTTGGTGTGCTCTCGCCAACAGACACCCG
GTCCCCTCGGACCACCACCACCAACTCCAACTCGTCCTCCAGTGGAACCT
GAGGTAAGAGGTCACCCGTACACGACAGAAGTGTTTGTCGTGCACGTCGA
CCGAGTGTGGACGAAACTGTCGACAACGGGCAAAGATTCGTGGTCGTGTG
CATGAATGACTTCGTGATCCGCGTTGGGGGATGATTCCGTCGCCAATGGT
CATGGTTGTTGATTCAGCAAATGTGGATGTCGGACGCTTCGCATGGTACG
TCTTCGTCGTGCAAGTAGGCGCCTAAGTCCTTCCAGGCTTGACAAGCCTT
CGTAGTCGTGTAAGCTAGAGTCCCATTTTGATCTGCGTTTGGGAAGAACC
CCGAGTCAACTGCCCTGATCTCACCGCAGAGAATGTTAATCGTATCACAT
CGGAGCCATGTCGGCGACCTGACAACGCCGGGCACCTTTTCCAGTTCCGG
AAGACGTGATGATTTGATAAGAGAACGGCCTTGCTTCGGTGCGCTGTCTC
TTGGTGTGCTCTCGTCAACAGACACCCGGACCGACAACCGCTTCACCTAC
AATCCCTTCTGCGACAACAAGCGCTCCCACGGAATCACTGCCAACACCTG
CACCAGTTCTCGCCGCAACACCTCTACCAGTCGTCCCAGAAGTAAGTCGT
CACTCGTACACGTAGGAAGCCTTTGTCGTGCACGCCGACTATGCGCAGAC
GCGACTTTACAGGCCGGGCAAAGATCCGTCATCGTGTGCATGAATGACCT
CTTGATACGCGTTGGCGGGCAATCTTTCGTCAATGTTCGTGGTTGTCGCC
GCAGAAAATGTGGCACGCATAACGCTGGAAGTCTTTGTCGTGCACGCCCA
CCGAGTGTAGACGAACCCTCCGAGGCTGGTCAAAGGATCTTAGTCGTGTG
CACGAATGGCCTCTAGACTCGCGTAGGCGGAGAATGTTTGGTCGACGGTC
ATGGTTGATGCCGATTCAAATGTGGTACGTATTACCTAGGAATATTTGTT
GTGGACGATAGGCGAGTGTAGACGAGCCATCGAGGCTGGGCAATGGGTCA
TAGTCGTGTGAGTGAATGACCTCCTTTGATCCGCGGGTGGAGACGAAAAT
CCTGTCAACTGCCCTGATGTCGCCGTAGAATATGTTCTGAGAATGACCTT
GGTTCGGTGCGCTGCGTCTTGATGTGCTCTCGCCAACAGACACCCGGTCC
CCTGGGATCCCTACCACCAACTCCAACTCGTCCTCCAGTGGAACCTGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13851:355..2753+

>mRNA_E-fasciculatus_F_contig13851.2838.1 ID=mRNA_E-fasciculatus_F_contig13851.2838.1|Name=mRNA_E-fasciculatus_F_contig13851.2838.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=432bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13851:355..2753+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACATCCGTTCCCCTGGGATCACTACCACCAACTCCAACTCGTCCTCCAGT
GGAACCTGAGACATCCGTTCCCCTGGGATCACTACCACCAACTCCAACTC
GTCCTCCAGTGGAACCTGAGACACCCGGGTCGACAACCGCTTCACCTACA
ATCCCTCCCGTGACAACAAGTGCTCCCACGGAATCACTGCCAACACCTGC
ACCAGTCGTCCCAGCTACACCCGGGTCGACAACCGCTTCACCTACAATCC
CTCCCGTGACAACAAGTGCTCCCACGGAATCACTGCCAACACCTGCACCA
GTCGTCCCAGCTACACCCGGTCCCCTGGGATCCCTACCACCAACTCCAAC
TCGTCCTCCAGTGGAACCTGAGACACCCGGTCCCCTGGGATCCCTACCAC
CAACTCCAACTCGTCCTCCAGTGGAACCTGAG
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