mRNA_E-fasciculatus_F_contig13848.2834.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13848.2834.1
Unique NamemRNA_E-fasciculatus_F_contig13848.2834.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig13848.2834.1 vs. uniprot
Match: D8LB05_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB05_ECTSI)

HSP 1 Score: 152 bits (383), Expect = 5.080e-41
Identity = 72/78 (92.31%), Postives = 76/78 (97.44%), Query Frame = 1
Query:    1 WHIPPGAELEVIRVSFTAETTGEFQGYVHIRTDGESMVVPVELHVSRGGVDPSPSEVDFGVLTSSLERRQASVSLFNG 234
            W IPPGAE+EVIRVSFTAETTGEF+GYVHIRTDGESMVVPVELHVS+GGVDPSP EVDFGVLTSSLERRQASVSL+NG
Sbjct:  378 WRIPPGAEMEVIRVSFTAETTGEFRGYVHIRTDGESMVVPVELHVSKGGVDPSPLEVDFGVLTSSLERRQASVSLYNG 455          
BLAST of mRNA_E-fasciculatus_F_contig13848.2834.1 vs. uniprot
Match: A0A6H5KQA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQA3_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 5.080e-41
Identity = 73/78 (93.59%), Postives = 75/78 (96.15%), Query Frame = 1
Query:    1 WHIPPGAELEVIRVSFTAETTGEFQGYVHIRTDGESMVVPVELHVSRGGVDPSPSEVDFGVLTSSLERRQASVSLFNG 234
            W IPPGAELEVIRVSFTAET GEFQGYVHIRTDGESMVVPVELHVS+GGVDP+P EVDFGVLTSSLERRQASVSLFNG
Sbjct:  468 WRIPPGAELEVIRVSFTAETPGEFQGYVHIRTDGESMVVPVELHVSKGGVDPTPLEVDFGVLTSSLERRQASVSLFNG 545          
BLAST of mRNA_E-fasciculatus_F_contig13848.2834.1 vs. uniprot
Match: A0A7S1RDK5_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1RDK5_ALECA)

HSP 1 Score: 79.3 bits (194), Expect = 3.520e-17
Identity = 35/77 (45.45%), Postives = 52/77 (67.53%), Query Frame = 1
Query:    1 WHIPPGAELEVIRVSFTAETTGEFQGYVHIRTDGESMVVPVELHVSRGGVDPSPSEVDFGVLTSSLERRQASVSLFN 231
            W IPP  +  V+R+S  A +TG F+G+VH++ D +S++VPVE+ V+RGGV  SP  VDF  L S L+ R   +++ N
Sbjct:   16 WTIPPRQQRTVVRISLLAHSTGRFRGFVHVKADQDSLLVPVEVLVTRGGVHVSPELVDFQTLVSPLQARSLWLTITN 92          
BLAST of mRNA_E-fasciculatus_F_contig13848.2834.1 vs. uniprot
Match: A0A7S2SPF7_9STRA (Hypothetical protein (Fragment) n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SPF7_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 3.800e-14
Identity = 34/62 (54.84%), Postives = 44/62 (70.97%), Query Frame = 1
Query:   46 FTAETTGEFQGYVHIRTDGESMVVPVELHVSRGGVDPSPSEVDFGVLTSSLERRQASVSLFN 231
            F A+  G   GYVH++TD + MVVPVE+ V +GG+ PSP E+DFG+LTS  E R   +SLFN
Sbjct:    2 FRADKPGVHVGYVHVKTDRDRMVVPVEVEVLQGGLHPSPKELDFGILTSPEEHRTIPISLFN 63          
BLAST of mRNA_E-fasciculatus_F_contig13848.2834.1 vs. uniprot
Match: A0A7S2NJ21_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2NJ21_9DINO)

HSP 1 Score: 72.0 bits (175), Expect = 6.370e-13
Identity = 32/77 (41.56%), Postives = 50/77 (64.94%), Query Frame = 1
Query:    1 WHIPPGAELEVIRVSFTAETTGEFQGYVHIRTDGESMVVPVELHVSRGGVDPSPSEVDFGVLTSSLERRQASVSLFN 231
            W IPP  +  +I VSF ++  G+F+G V+++TD ES++VP +  V++GGV  +P  VDF  L S L+ R   ++L N
Sbjct:  179 WTIPPKQQSVIIHVSFVSQVAGKFKGLVNVKTDAESLLVPFDALVTKGGVHVAPELVDFQTLVSPLQSRSLWLTLTN 255          
BLAST of mRNA_E-fasciculatus_F_contig13848.2834.1 vs. uniprot
Match: A0A7S0W822_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0W822_9CRYP)

HSP 1 Score: 65.5 bits (158), Expect = 8.940e-12
Identity = 26/77 (33.77%), Postives = 49/77 (63.64%), Query Frame = 1
Query:    1 WHIPPGAELEVIRVSFTAETTGEFQGYVHIRTDGESMVVPVELHVSRGGVDPSPSEVDFGVLTSSLERRQASVSLFN 231
            W +PP  +++VI ++F + + G+  GYVH+RTD + +V+PVEL V +GG+  +  E+ F  +    +++   ++L N
Sbjct:    6 WVVPPHKKMKVIGLNFHSVSAGKHSGYVHVRTDRDDLVIPVELSVMKGGLHTAQPEMVFDTIIIPGQKKDLPIALLN 82          
BLAST of mRNA_E-fasciculatus_F_contig13848.2834.1 vs. uniprot
Match: A0A7S1F5S5_NOCSC (Hypothetical protein (Fragment) n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1F5S5_NOCSC)

HSP 1 Score: 68.2 bits (165), Expect = 1.440e-11
Identity = 29/77 (37.66%), Postives = 50/77 (64.94%), Query Frame = 1
Query:    1 WHIPPGAELEVIRVSFTAETTGEFQGYVHIRTDGESMVVPVELHVSRGGVDPSPSEVDFGVLTSSLERRQASVSLFN 231
            W + PG +  VI  SF + TTG F+G+VH++TD ++++VP ++ V++GGV  +P  VDF  L +  + R   +++ N
Sbjct:  214 WTLMPGQQKPVIHASFISHTTGHFEGFVHLKTDMDNLLVPFDVVVTKGGVHVTPEIVDFLTLVTPEQSRSMWLTVTN 290          
BLAST of mRNA_E-fasciculatus_F_contig13848.2834.1 vs. uniprot
Match: A0A7S1KTK6_9EUKA (Hypothetical protein n=1 Tax=Percolomonas cosmopolitus TaxID=63605 RepID=A0A7S1KTK6_9EUKA)

HSP 1 Score: 67.4 bits (163), Expect = 2.720e-11
Identity = 31/77 (40.26%), Postives = 47/77 (61.04%), Query Frame = 1
Query:    1 WHIPPGAELEVIRVSFTAETTGEFQGYVHIRTDGESMVVPVELHVSRGGVDPSPSEVDFGVLTSSLERRQASVSLFN 231
            W IPP +   VI ++F A+  G +QG+VH++T+ + ++V VE  VS+ GV     E+DFG + S  E R+  V L N
Sbjct:  261 WTIPPHSSKTVIFLNFKAKQAGTYQGFVHLKTNFDPLIVHVEFIVSKNGVHRVVDELDFGTIISPSEHRKREVMLLN 337          
BLAST of mRNA_E-fasciculatus_F_contig13848.2834.1 vs. uniprot
Match: A0A7S1GV73_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1GV73_HEMAN)

HSP 1 Score: 61.6 bits (148), Expect = 1.390e-9
Identity = 25/77 (32.47%), Postives = 48/77 (62.34%), Query Frame = 1
Query:    1 WHIPPGAELEVIRVSFTAETTGEFQGYVHIRTDGESMVVPVELHVSRGGVDPSPSEVDFGVLTSSLERRQASVSLFN 231
            W +PP  +++VI +SF + + G+  G+VH+RTD + +V+PVEL V +GG+  +   + F  +    +++   ++L N
Sbjct:   11 WVVPPHKKMKVIGLSFHSVSAGKHSGFVHVRTDKDDLVIPVELTVMKGGLHTARPTMVFETIIIPGQKKDLPIALLN 87          
BLAST of mRNA_E-fasciculatus_F_contig13848.2834.1 vs. uniprot
Match: A0A0G4E869_VITBC (TMEM131_like_N domain-containing protein n=5 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4E869_VITBC)

HSP 1 Score: 62.0 bits (149), Expect = 2.160e-9
Identity = 29/80 (36.25%), Postives = 47/80 (58.75%), Query Frame = 1
Query:    1 WHIPPGAELEVIRVSFTAETTGEFQGYVHIRTDGESMVVPVELHVSR---GGVDPSPSEVDFGVLTSSLERRQASVSLFN 231
            W IP      VI+++F  +  G ++G+VH++TD E+M+VPV +   +   GG+  SP E+DF  L S  + R  S+ + N
Sbjct:  436 WTIPGHGNRTVIQLNFVGQKAGHYKGFVHVKTDRETMLVPVSIECVQEEGGGLQISPEELDFQTLVSRQQARVMSLFVAN 515          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13848.2834.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D8LB05_ECTSI5.080e-4192.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQA3_9PHAE5.080e-4193.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1RDK5_ALECA3.520e-1745.45Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A7S2SPF7_9STRA3.800e-1454.84Hypothetical protein (Fragment) n=2 Tax=Rhizochrom... [more]
A0A7S2NJ21_9DINO6.370e-1341.56Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
A0A7S0W822_9CRYP8.940e-1233.77Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S1F5S5_NOCSC1.440e-1137.66Hypothetical protein (Fragment) n=1 Tax=Noctiluca ... [more]
A0A7S1KTK6_9EUKA2.720e-1140.26Hypothetical protein n=1 Tax=Percolomonas cosmopol... [more]
A0A7S1GV73_HEMAN1.390e-932.47Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A0G4E869_VITBC2.160e-936.25TMEM131_like_N domain-containing protein n=5 Tax=V... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13848contigE-fasciculatus_F_contig13848:123..914 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.4
Seed ortholog evalue1.8e-34
Seed eggNOG ortholog2880.D8LB05
Preferred nameTMEM131
GOsGO:0002682,GO:0002683,GO:0002694,GO:0002695,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0007162,GO:0008150,GO:0008285,GO:0009966,GO:0009968,GO:0010646,GO:0010648,GO:0016020,GO:0022407,GO:0022408,GO:0023051,GO:0023057,GO:0030111,GO:0030155,GO:0030178,GO:0032944,GO:0032945,GO:0033081,GO:0033083,GO:0033084,GO:0033085,GO:0033087,GO:0033088,GO:0042127,GO:0042129,GO:0042130,GO:0044424,GO:0044464,GO:0045580,GO:0045581,GO:0045595,GO:0045596,GO:0045619,GO:0045620,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050670,GO:0050672,GO:0050789,GO:0050793,GO:0050794,GO:0050863,GO:0050865,GO:0050866,GO:0050868,GO:0051093,GO:0051239,GO:0051241,GO:0051249,GO:0051250,GO:0060828,GO:0065007,GO:0070663,GO:0070664,GO:0071944,GO:0090090,GO:1902105,GO:1902106,GO:1903037,GO:1903038,GO:1903706,GO:1903707,GO:2000026
EggNOG free text desc.negative regulation of immature T cell proliferation in thymus
EggNOG OGsKOG3620@1,KOG3620@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size237
Cds size237
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927878.578882-CDS-E-fasciculatus_F_contig13848:122..2841622927878.578882-CDS-E-fasciculatus_F_contig13848:122..284Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13848 123..284 -
1695995734.507656-CDS-E-fasciculatus_F_contig13848:122..2841695995734.507656-CDS-E-fasciculatus_F_contig13848:122..284Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13848 123..284 -
1622927878.5910811-CDS-E-fasciculatus_F_contig13848:839..9141622927878.5910811-CDS-E-fasciculatus_F_contig13848:839..914Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13848 840..914 -
1695995734.5242493-CDS-E-fasciculatus_F_contig13848:839..9141695995734.5242493-CDS-E-fasciculatus_F_contig13848:839..914Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13848 840..914 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13848.2834.1prot_E-fasciculatus_F_contig13848.2834.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13848 123..914 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13848.2834.1

>prot_E-fasciculatus_F_contig13848.2834.1 ID=prot_E-fasciculatus_F_contig13848.2834.1|Name=mRNA_E-fasciculatus_F_contig13848.2834.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=79bp
WHIPPGAELEVIRVSFTAETTGEFQGYVHIRTDGESMVVPVELHVSRGGV
DPSPSEVDFGVLTSSLERRQASVSLFNG*
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mRNA from alignment at E-fasciculatus_F_contig13848:123..914-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13848.2834.1 ID=mRNA_E-fasciculatus_F_contig13848.2834.1|Name=mRNA_E-fasciculatus_F_contig13848.2834.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=792bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13848:123..914- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGGCACATCCCGCCGGGTGCGGAGCTGGAAGTGATACGGGTGTCCTTCAC GGCGGAGACTACTGGGGAGTTCCAGGTAAGCCCTGCTTTTTGTTTCTTTT TTTTGTAGACTGAATGGAAGGCATGTTTTACCGGTGGGTAGGGGTTCTCA GGGAGAGAAACCCTTCCGCGTCTTGTTGTGGCCACGGATTGGAGCTCCTA TACACCCGGCAGAAATACCGCTGGTATAGTATAAAGTTAAAGTTAGGAAG AAAATAAAAGGGCCGGTGAAACGCTGCAGCAAGCCTACCCGACGCGGAAA GCCAGCCGGGAAGGAATTAAGCACCTACCGGGGGCGGGAAAGAAGAATGG ACAAGCGATCGGAAAATAGTGTTTTTGTAGCCAAGACCTGCTGTGTGCAG TAACATGTACTGGTAGTTGCTTTGAGAGCGGGTGCCTCCGCCCCCATGTT CTGGTTGTTATCCGGCCGTGCGTCCGAGTTCCTTGTCGTGAAGTTTGGCT TCATTCCTGTCTTACTCCCGGGTGTTTTTTTTCTCCATTCTATCAATTGA GCGCCGCACCGTTGTAGTCCTGGCCACCGCGTTGCCCCTGAGACGCCGTC CCCGATTATTTATTTCTTCTCCGTTTATAGGGGTACGTGCACATCCGCAC CGACGGCGAGAGCATGGTGGTGCCGGTGGAGTTGCACGTGTCGAGGGGAG GCGTCGACCCGAGTCCGTCTGAGGTGGACTTTGGGGTGCTCACTTCTTCC CTCGAGCGTCGCCAGGCCTCTGTCTCGCTCTTCAACGGGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13848:123..914-

>mRNA_E-fasciculatus_F_contig13848.2834.1 ID=mRNA_E-fasciculatus_F_contig13848.2834.1|Name=mRNA_E-fasciculatus_F_contig13848.2834.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=474bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13848:123..914- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGGCACATCCCGCCGGGTGCGGAGCTGGAAGTGATACGGGTGTCCTTCAC
GGCGGAGACTACTGGGGAGTTCCAGTGGCACATCCCGCCGGGTGCGGAGC
TGGAAGTGATACGGGTGTCCTTCACGGCGGAGACTACTGGGGAGTTCCAG
GGGTACGTGCACATCCGCACCGACGGCGAGAGCATGGTGGTGCCGGTGGA
GTTGCACGTGTCGAGGGGAGGCGTCGACCCGAGTCCGTCTGAGGTGGACT
TTGGGGTGCTCACTTCTTCCCTCGAGCGTCGCCAGGCCTCTGTCTCGCTC
TTCAACGGGTGAGGGTACGTGCACATCCGCACCGACGGCGAGAGCATGGT
GGTGCCGGTGGAGTTGCACGTGTCGAGGGGAGGCGTCGACCCGAGTCCGT
CTGAGGTGGACTTTGGGGTGCTCACTTCTTCCCTCGAGCGTCGCCAGGCC
TCTGTCTCGCTCTTCAACGGGTGA
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