mRNA_E-fasciculatus_F_contig13836.2826.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13836.2826.1
Unique NamemRNA_E-fasciculatus_F_contig13836.2826.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13836.2826.1 vs. uniprot
Match: A0A6H5LB87_9PHAE (AAA domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LB87_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 2.420e-50
Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1 
Query:    1 VWESLVLERGVKNHLLEYATSALLFTDKGVSKNVISWNKVVLLHGPPGTGKTSLCKALAHKLSIRLGDRYSTGQLLEINAHSLFSK 258
            VWESLVLERGVKNHLLEYATSALLFTDKGVSKNVISWNKVVLLHGPPGTGKTSLCKALAHKLSIRLGDRYSTGQLLEINAHSLFSK
Sbjct:  122 VWESLVLERGVKNHLLEYATSALLFTDKGVSKNVISWNKVVLLHGPPGTGKTSLCKALAHKLSIRLGDRYSTGQLLEINAHSLFSK 207
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BLAST of mRNA_E-fasciculatus_F_contig13836.2826.1 vs. uniprot
Match: A0A6S7JL65_PARCT (Pachytene checkpoint 2 homolog n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7JL65_PARCT)

HSP 1 Score: 135 bits (340), Expect = 4.580e-37
Identity = 63/86 (73.26%), Postives = 75/86 (87.21%), Query Frame = 1 
Query:    1 VWESLVLERGVKNHLLEYATSALLFTDKGVSKNVISWNKVVLLHGPPGTGKTSLCKALAHKLSIRLGDRYSTGQLLEINAHSLFSK 258
            +WESL+ +  VK+ LL+YA + LLF+D+GV  N+ISWNKVVLLHGPPGTGKTSLCKALA KLSIRL DR+S GQL+EIN+HSLFSK
Sbjct:   14 LWESLLFDSDVKHQLLQYAATTLLFSDRGVDNNIISWNKVVLLHGPPGTGKTSLCKALAQKLSIRLSDRFSYGQLIEINSHSLFSK 99
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BLAST of mRNA_E-fasciculatus_F_contig13836.2826.1 vs. uniprot
Match: A0A835Z7T2_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7T2_9STRA)

HSP 1 Score: 138 bits (347), Expect = 5.150e-37
Identity = 66/86 (76.74%), Postives = 77/86 (89.53%), Query Frame = 1 
Query:    1 VWESLVLERGVKNHLLEYATSALLFTDKGVSKNVISWNKVVLLHGPPGTGKTSLCKALAHKLSIRLGDRYSTGQLLEINAHSLFSK 258
            +WESL+LE  +K  LL+YATSALLF+D+ VSK++ISWN+VVLLHGPPGTGKTSLCKALAHKL+IRLG R+   QLLEINAHSLFSK
Sbjct:  124 LWESLLLEDTIKAQLLDYATSALLFSDRQVSKHIISWNRVVLLHGPPGTGKTSLCKALAHKLAIRLGGRFQAAQLLEINAHSLFSK 209
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BLAST of mRNA_E-fasciculatus_F_contig13836.2826.1 vs. uniprot
Match: UPI001130C90A (pachytene checkpoint protein 2 homolog n=1 Tax=Oncorhynchus nerka TaxID=8023 RepID=UPI001130C90A)

HSP 1 Score: 131 bits (329), Expect = 5.890e-37
Identity = 61/86 (70.93%), Postives = 72/86 (83.72%), Query Frame = 1 
Query:    1 VWESLVLERGVKNHLLEYATSALLFTDKGVSKNVISWNKVVLLHGPPGTGKTSLCKALAHKLSIRLGDRYSTGQLLEINAHSLFSK 258
            +WESLV E GVK  LL+Y ++ + F+DK V  N+ISWN+VVLLHGPPGTGKTSLCKALA KLSIRL +RYS GQ +EIN+HSLFSK
Sbjct:   58 IWESLVYESGVKTQLLDYVSTTIYFSDKNVDSNLISWNRVVLLHGPPGTGKTSLCKALAQKLSIRLSNRYSYGQFVEINSHSLFSK 143
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BLAST of mRNA_E-fasciculatus_F_contig13836.2826.1 vs. uniprot
Match: UPI00106D935A (pachytene checkpoint protein 2 homolog n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106D935A)

HSP 1 Score: 137 bits (345), Expect = 7.390e-37
Identity = 63/86 (73.26%), Postives = 77/86 (89.53%), Query Frame = 1 
Query:    1 VWESLVLERGVKNHLLEYATSALLFTDKGVSKNVISWNKVVLLHGPPGTGKTSLCKALAHKLSIRLGDRYSTGQLLEINAHSLFSK 258
            +WE+L+ +  VKN LL+YA++ LLF+D+GV+ N+ISWNKVVLLHGPPGTGKTSLCKALA KLSIRL DR+ TGQL+EIN+HSLFSK
Sbjct:  131 LWENLLFDSDVKNQLLQYASTTLLFSDRGVNTNIISWNKVVLLHGPPGTGKTSLCKALAQKLSIRLADRFHTGQLIEINSHSLFSK 216
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BLAST of mRNA_E-fasciculatus_F_contig13836.2826.1 vs. uniprot
Match: UPI0010FCA30A (pachytene checkpoint protein 2 homolog n=2 Tax=Acropora TaxID=6127 RepID=UPI0010FCA30A)

HSP 1 Score: 136 bits (343), Expect = 1.160e-36
Identity = 64/86 (74.42%), Postives = 75/86 (87.21%), Query Frame = 1 
Query:    1 VWESLVLERGVKNHLLEYATSALLFTDKGVSKNVISWNKVVLLHGPPGTGKTSLCKALAHKLSIRLGDRYSTGQLLEINAHSLFSK 258
            VW+SL+ +  VK  L+ YAT+ LLF+D+GV+ NVISWN+VVLLHGPPGTGKTSLCKALA KLSIRL DRYS GQL+EIN+HSLFSK
Sbjct:  129 VWDSLIFDSDVKAQLINYATTTLLFSDRGVNSNVISWNRVVLLHGPPGTGKTSLCKALAQKLSIRLSDRYSYGQLIEINSHSLFSK 214
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BLAST of mRNA_E-fasciculatus_F_contig13836.2826.1 vs. uniprot
Match: A0A8C7X8S9_9TELE (Pachytene checkpoint protein 2 homolog n=1 Tax=Oryzias sinensis TaxID=183150 RepID=A0A8C7X8S9_9TELE)

HSP 1 Score: 134 bits (338), Expect = 1.830e-36
Identity = 62/86 (72.09%), Postives = 73/86 (84.88%), Query Frame = 1 
Query:    1 VWESLVLERGVKNHLLEYATSALLFTDKGVSKNVISWNKVVLLHGPPGTGKTSLCKALAHKLSIRLGDRYSTGQLLEINAHSLFSK 258
            +WESLV E G+K+ LL+Y T+ + F+DK V  N+ISWN+VVLLHGPPGTGKTSLCKALA KLSIRL DRYS GQ +EIN+HSLFSK
Sbjct:  138 IWESLVYETGIKSKLLDYVTTTIYFSDKNVDSNLISWNRVVLLHGPPGTGKTSLCKALAQKLSIRLSDRYSYGQFIEINSHSLFSK 223
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BLAST of mRNA_E-fasciculatus_F_contig13836.2826.1 vs. uniprot
Match: A0A7S1EFY0_HEMAN (Hypothetical protein n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1EFY0_HEMAN)

HSP 1 Score: 135 bits (340), Expect = 3.450e-36
Identity = 62/86 (72.09%), Postives = 77/86 (89.53%), Query Frame = 1 
Query:    1 VWESLVLERGVKNHLLEYATSALLFTDKGVSKNVISWNKVVLLHGPPGTGKTSLCKALAHKLSIRLGDRYSTGQLLEINAHSLFSK 258
            +W++LV +  VK+HLLEYATSA+ F DKGV+ +V+SWN+VVLLHGPPGTGKTSLC+ALA KLSIR+ DR+S GQL+E+NAHSLFSK
Sbjct:  123 LWDTLVYDSEVKSHLLEYATSAMYFADKGVNASVVSWNRVVLLHGPPGTGKTSLCQALAQKLSIRMSDRFSFGQLVEVNAHSLFSK 208
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13836.2826.1 vs. uniprot
Match: A0A3Q1EY93_9TELE (Pachytene checkpoint protein 2 homolog n=1 Tax=Acanthochromis polyacanthus TaxID=80966 RepID=A0A3Q1EY93_9TELE)

HSP 1 Score: 132 bits (331), Expect = 4.110e-36
Identity = 62/86 (72.09%), Postives = 72/86 (83.72%), Query Frame = 1 
Query:    1 VWESLVLERGVKNHLLEYATSALLFTDKGVSKNVISWNKVVLLHGPPGTGKTSLCKALAHKLSIRLGDRYSTGQLLEINAHSLFSK 258
            +WESLV E GVK  LL+Y T+ + F+DK V  N+ISWN+VVLLHGPPGTGKTSLCKALA KLSIRL +RYS GQ +EIN+HSLFSK
Sbjct:   64 IWESLVYETGVKMQLLDYVTTTIYFSDKNVDSNLISWNRVVLLHGPPGTGKTSLCKALAQKLSIRLSNRYSYGQFVEINSHSLFSK 149
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13836.2826.1 vs. uniprot
Match: A0A3Q1GGL2_9TELE (Pachytene checkpoint protein 2 homolog n=1 Tax=Acanthochromis polyacanthus TaxID=80966 RepID=A0A3Q1GGL2_9TELE)

HSP 1 Score: 132 bits (331), Expect = 5.550e-36
Identity = 62/86 (72.09%), Postives = 72/86 (83.72%), Query Frame = 1 
Query:    1 VWESLVLERGVKNHLLEYATSALLFTDKGVSKNVISWNKVVLLHGPPGTGKTSLCKALAHKLSIRLGDRYSTGQLLEINAHSLFSK 258
            +WESLV E GVK  LL+Y T+ + F+DK V  N+ISWN+VVLLHGPPGTGKTSLCKALA KLSIRL +RYS GQ +EIN+HSLFSK
Sbjct:   15 IWESLVYETGVKMQLLDYVTTTIYFSDKNVDSNLISWNRVVLLHGPPGTGKTSLCKALAQKLSIRLSNRYSYGQFVEINSHSLFSK 100
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13836.2826.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LB87_9PHAE2.420e-50100.00AAA domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A6S7JL65_PARCT4.580e-3773.26Pachytene checkpoint 2 homolog n=1 Tax=Paramuricea... [more]
A0A835Z7T2_9STRA5.150e-3776.74P-loop containing nucleoside triphosphate hydrolas... [more]
UPI001130C90A5.890e-3770.93pachytene checkpoint protein 2 homolog n=1 Tax=Onc... [more]
UPI00106D935A7.390e-3773.26pachytene checkpoint protein 2 homolog n=1 Tax=Den... [more]
UPI0010FCA30A1.160e-3674.42pachytene checkpoint protein 2 homolog n=2 Tax=Acr... [more]
A0A8C7X8S9_9TELE1.830e-3672.09Pachytene checkpoint protein 2 homolog n=1 Tax=Ory... [more]
A0A7S1EFY0_HEMAN3.450e-3672.09Hypothetical protein n=1 Tax=Hemiselmis andersenii... [more]
A0A3Q1EY93_9TELE4.110e-3672.09Pachytene checkpoint protein 2 homolog n=1 Tax=Aca... [more]
A0A3Q1GGL2_9TELE5.550e-3672.09Pachytene checkpoint protein 2 homolog n=1 Tax=Aca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13836contigE-fasciculatus_F_contig13836:127..833 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score171.8
Seed ortholog evalue1.4e-40
Seed eggNOG ortholog2880.D7FYR6
Preferred nameTRIP13
KEGG rclassRC00376,RC00563
KEGG koko:K00413,ko:K01810,ko:K22399
KEGG ReactionR02739,R02740,R03321
KEGG Pathwayko00010,ko00030,ko00190,ko00500,ko00520,ko01100,ko01110,ko01120,ko01130,ko01200,ko02020,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00010,map00030,map00190,map00500,map00520,map01100,map01110,map01120,map01130,map01200,map02020,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00001,M00004,M00114,M00151,M00152
GOsGO:0000003,GO:0000075,GO:0000166,GO:0000278,GO:0000280,GO:0001556,GO:0001673,GO:0003006,GO:0003674,GO:0003712,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006351,GO:0006366,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007088,GO:0007093,GO:0007094,GO:0007127,GO:0007129,GO:0007130,GO:0007131,GO:0007140,GO:0007141,GO:0007143,GO:0007144,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007292,GO:0007346,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0009994,GO:0010467,GO:0010556,GO:0010564,GO:0010639,GO:0010948,GO:0010965,GO:0016043,GO:0016070,GO:0017076,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019953,GO:0021700,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0030071,GO:0030154,GO:0030554,GO:0031323,GO:0031326,GO:0031577,GO:0032501,GO:0032502,GO:0032504,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033313,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035639,GO:0035825,GO:0036094,GO:0040020,GO:0042138,GO:0042802,GO:0043073,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044424,GO:0044464,GO:0044703,GO:0045132,GO:0045143,GO:0045786,GO:0045835,GO:0045839,GO:0045841,GO:0045930,GO:0046483,GO:0048232,GO:0048285,GO:0048468,GO:0048469,GO:0048477,GO:0048515,GO:0048519,GO:0048523,GO:0048599,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051129,GO:0051171,GO:0051252,GO:0051276,GO:0051321,GO:0051445,GO:0051447,GO:0051598,GO:0051704,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0060255,GO:0061982,GO:0065007,GO:0070192,GO:0070193,GO:0071173,GO:0071174,GO:0071695,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0097159,GO:0097367,GO:0097659,GO:0098813,GO:0140013,GO:0140110,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1903046,GO:1903047,GO:1903506,GO:1905818,GO:1905819,GO:2000241,GO:2000242,GO:2000816,GO:2001141,GO:2001251
EggNOG free text desc.homologous recombination
EggNOG OGsCOG0464@1,KOG0744@2759
EC5.3.1.9
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03036,ko04147
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAAA ATPase domain
Ec32 orthologEc-19_002220.1
Exons2
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927877.4972262-CDS-E-fasciculatus_F_contig13836:126..2681622927877.4972262-CDS-E-fasciculatus_F_contig13836:126..268Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13836 127..268 -
1695995734.1481373-CDS-E-fasciculatus_F_contig13836:126..2681695995734.1481373-CDS-E-fasciculatus_F_contig13836:126..268Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13836 127..268 -
1622927877.5189264-CDS-E-fasciculatus_F_contig13836:717..8331622927877.5189264-CDS-E-fasciculatus_F_contig13836:717..833Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13836 718..833 -
1695995734.1613069-CDS-E-fasciculatus_F_contig13836:717..8331695995734.1613069-CDS-E-fasciculatus_F_contig13836:717..833Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13836 718..833 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13836.2826.1prot_E-fasciculatus_F_contig13836.2826.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13836 127..833 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13836.2826.1

>prot_E-fasciculatus_F_contig13836.2826.1 ID=prot_E-fasciculatus_F_contig13836.2826.1|Name=mRNA_E-fasciculatus_F_contig13836.2826.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=86bp
VWESLVLERGVKNHLLEYATSALLFTDKGVSKNVISWNKVVLLHGPPGTG
KTSLCKALAHKLSIRLGDRYSTGQLLEINAHSLFSK
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mRNA from alignment at E-fasciculatus_F_contig13836:127..833-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13836.2826.1 ID=mRNA_E-fasciculatus_F_contig13836.2826.1|Name=mRNA_E-fasciculatus_F_contig13836.2826.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=707bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13836:127..833- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGTGGGAAAGCTTGGTTCTCGAGCGGGGGGTGAAGAACCACCTGCTGGA
GTACGCAACCTCGGCCCTGCTGTTCACGGACAAGGGCGTCAGCAAGAACG
TAATCTCGTGGAACAAGTGAGACGGCCATCAAACCTTTTCAGTGGCTGTT
TTGCGACCGTGGGCGTTGCGCTCGTCCCAAGTAGCACTACCACGCATGCC
CACGGCCGTTGTTGGATGTCGAGTGTCGAGTGGAATCGGATCCTACCGTT
AATCAAGTGCAGAAACCCGGTGTCACGCTCGGGGAGCAAGAGTGGAATGG
GGGAGCCGATCCCACGATCAAGCGGTGGCTCTCTAGATCCCTACACGTTG
AACTGGGGTAGAATCGGATTCCACGTTCACAATCAAGTGACACCCCTACG
CAGACCCACGGCGTGGGGGCGGACACCACGTGTTGTTCCACCGGCCACCT
GTAACTGTGTGGACTACGAACACCGCTGCAACTACAACTATATCACTGTG
AAGATAGTCACAGTCACAGTCACAGTCACAGTCACACTCTGTGCTGCCAA
TGACGAGCGGAACAGGGTGGTTTTGCTGCACGGCCCTCCCGGCACCGGCA
AGACCTCCCTGTGCAAGGCCCTGGCGCACAAGCTCAGCATCCGCCTCGGC
GACAGGTACTCCACCGGGCAGCTGCTCGAGATCAACGCTCACAGCCTCTT
TAGCAAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13836:127..833-

>mRNA_E-fasciculatus_F_contig13836.2826.1 ID=mRNA_E-fasciculatus_F_contig13836.2826.1|Name=mRNA_E-fasciculatus_F_contig13836.2826.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=516bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13836:127..833- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGTGGGAAAGCTTGGTTCTCGAGCGGGGGGTGAAGAACCACCTGCTGGA
GTACGCAACCTCGGCCCTGCTGTTCACGGACAAGGGCGTCAGCAAGAACG
TAATCTCGTGGAACAAGTGTGGGAAAGCTTGGTTCTCGAGCGGGGGGTGA
AGAACCACCTGCTGGAGTACGCAACCTCGGCCCTGCTGTTCACGGACAAG
GGCGTCAGCAAGAACGTAATCTCGTGGAACAAGGTGGTTTTGCTGCACGG
CCCTCCCGGCACCGGCAAGACCTCCCTGTGCAAGGCCCTGGCGCACAAGC
TCAGCATCCGCCTCGGCGACAGGTACTCCACCGGGCAGCTGCTCGAGATC
AACGCTCACAGCCTCTTTAGCAAGGGTGGTTTTGCTGCACGGCCCTCCCG
GCACCGGCAAGACCTCCCTGTGCAAGGCCCTGGCGCACAAGCTCAGCATC
CGCCTCGGCGACAGGTACTCCACCGGGCAGCTGCTCGAGATCAACGCTCA
CAGCCTCTTTAGCAAG
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