mRNA_E-fasciculatus_F_contig13834.2825.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig13834.2825.1 vs. uniprot
Match: A0A6H5KNI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI6_9PHAE) HSP 1 Score: 141 bits (356), Expect = 2.510e-32 Identity = 79/149 (53.02%), Postives = 95/149 (63.76%), Query Frame = 3
Query: 9 RWYTSTLELQLVSLAFCGECRSVPTLHVHIGEATPSSLWSHHESHKTPDECSREDNISSRVPAVEAFSWTWAFEIPEEALLQRST---------------AFAACLASALWPQTLKRLVFDSNMPVDTALWPASLQQISFGYGFDKPIV 410
RWY STLELQLVSL CG CR V TLHV + TP SLW ++H T + S + ISSRVP V+AF TWA +P L QRS + AA L SA+WPQ LKR+VF+S+M V+TA WPASLQQ+SFG GF++ IV
Sbjct: 27 RWYVSTLELQLVSLEVCGACRRVQTLHVRVKPQTPPSLWFPSQNHTTTNNRSPKVCISSRVPVVQAFGLTWA--LPMGVLQQRSATEVRSGSGCRRANTHSSAASLESAVWPQRLKRMVFESDMTVNTASWPASLQQLSFGCGFNQAIV 173
BLAST of mRNA_E-fasciculatus_F_contig13834.2825.1 vs. uniprot
Match: A0A6H5KLV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV1_9PHAE) HSP 1 Score: 135 bits (340), Expect = 1.260e-31 Identity = 78/147 (53.06%), Postives = 90/147 (61.22%), Query Frame = 3
Query: 9 RWYTSTLELQLVSLAFCGECRSVPTLHVHIGEATPSSLWSHHESHKTPDECSREDNISSRVPAVEAFSWTWAFEIPEEALLQRST---------------AFAACLASALWPQT-LKRLVFDSNMPVDTALWPASLQQISFGYGFDK 401
RWY STLELQLVSL FCG CR VPTLHV + TP SLWS +SH T + SRE +S+RVPAV+A TWA ++ E LLQ S + A L S W Q LKRLVFDS+MP TA WPASL Q+ FG FD+
Sbjct: 35 RWYASTLELQLVSLEFCGACRRVPTLHVRVDRQTPRSLWSPCKSHATTKKRSREACVSNRVPAVQASGLTWALDM--EVLLQTSAVELRSRSKYRRVSGNSSTASLGSMFWLQMMLKRLVFDSDMPASTASWPASLPQLLFGDRFDQ 179
BLAST of mRNA_E-fasciculatus_F_contig13834.2825.1 vs. uniprot
Match: A0A6H5K8K9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K9_9PHAE) HSP 1 Score: 117 bits (293), Expect = 1.860e-24 Identity = 70/149 (46.98%), Postives = 84/149 (56.38%), Query Frame = 3
Query: 9 RWYTSTLELQLVSLAFCGECRSVPTLHVHIGEATPSSLWSHHESHKTPDECSREDNISSRVPAVEAFSWTWAFEIPEEALLQRST---------------AFAACLASALWPQTLKRLVFDSNMPVDTALWPASLQQISFGYGFDKPIV 410
RWY STLELQLVSL FCG CRS + V I TP SLWS +SH T + SRE I SRVPAV+A W WA +P E LL RS + A W Q L RL+F S V++ WPA LQ++SFG F++PI+
Sbjct: 47 RWYVSTLELQLVSLEFCGACRSALSFDVQIHRQTPHSLWSPRKSHGTLKKRSREACIPSRVPAVQANGWMWA--LPMEILLPRSATELHQVSENRQPTGPSSATSPGRMGWFQKLTRLMFYSERSVNSVSWPACLQELSFGDFFNQPII 193
BLAST of mRNA_E-fasciculatus_F_contig13834.2825.1 vs. uniprot
Match: A0A6H5L3M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3M5_9PHAE) HSP 1 Score: 112 bits (281), Expect = 5.170e-23 Identity = 67/150 (44.67%), Postives = 85/150 (56.67%), Query Frame = 3
Query: 9 RWYTSTLELQLVSLAFCGECRSVPTLHVHIGEATPSSLWSHHES--HKTPDECSREDNISSRVPAVEAFSWTWAFEIPEEALLQ--------------RSTAFAACLASALWPQTLKRLVFDSNMPVDTALWPASLQQISFGYGFDKPIV 410
RWYTS ELQLVSL FCG CRS L V + P SLWS +S + PD +RVPAV A+ WTW+ IP + LL+ R + A LAS +WPQ LK+L FD + V+ A WPASLQ ++FG F++PI+
Sbjct: 122 RWYTSIRELQLVSLKFCGVCRSTSILRVRVEHNAPPSLWSPTKSFSYALPD-------AWNRVPAVRAYGWTWS--IPVDTLLKVCDLRYWAKAELSRRGSFPEAKLASVVWPQGLKQLEFDLDTAVEKASWPASLQSLTFGCSFNQPIL 262
BLAST of mRNA_E-fasciculatus_F_contig13834.2825.1 vs. uniprot
Match: A0A6H5L1V9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V9_9PHAE) HSP 1 Score: 102 bits (253), Expect = 1.100e-19 Identity = 61/147 (41.50%), Postives = 83/147 (56.46%), Query Frame = 3
Query: 9 RWYTSTLELQLVSLAFCGECRSVPTLHVHIGEATPSSLWSHHESHKTPDECSREDNISSRVPAVEAFSWTWA--FEIPE-----------EALLQRSTAFAACLASALWPQTLKRLVFDSNM---PVDTALWPASLQQISFGYGFDK 401
RWYTSTL+LQL SL FCG CRS P LHV++ TP +LWS +++ T S+RVPAV+A TWA E P E+L + + A L S +WPQ L+RLV D + P++ WP+SL+ ++F FD+
Sbjct: 27 RWYTSTLQLQLASLEFCGACRSTPMLHVYVDAETPPTLWSLGQANPTA-------GTSTRVPAVQAVGLTWARPTESPLGSASSELWTRLESLQLQVSLCTANLDSVVWPQGLQRLVMDCTVFIIPLEMMSWPSSLKSLTFAGIFDQ 166
BLAST of mRNA_E-fasciculatus_F_contig13834.2825.1 vs. uniprot
Match: A0A6H5K2L2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2L2_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 4.860e-18 Identity = 65/144 (45.14%), Postives = 74/144 (51.39%), Query Frame = 3
Query: 9 RWYTSTLELQLVSLAFCGECRSVPTLHVHIGEATPSSLWSHHESHKTPDECSREDNISSRVPAVEAFSWTWAFEIPE-----EALLQRSTAF--------AACLASALWPQTLKRLVFDSNMPVDTALWPASLQQISFGYGFDK 401
RWY STLELQ VSL FC CR VPT H +T L S SR P V A+S TWA + LQR + + AA LAS LW Q LKRLV + + PV TA WPASLQQ+SFGY F+K
Sbjct: 37 RWYASTLELQPVSLEFCVACRRVPTSH---STSTVGRLVSG----------------VSRAPVVRAYSLTWALSMDVLLQSCAMELQRGSKYRRSGGHSSAANLASMLWLQRLKRLVLELDTPVITASWPASLQQLSFGYKFNK 161
BLAST of mRNA_E-fasciculatus_F_contig13834.2825.1 vs. uniprot
Match: A0A6H5JL88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL88_9PHAE) HSP 1 Score: 82.8 bits (203), Expect = 1.990e-13 Identity = 59/160 (36.88%), Postives = 82/160 (51.25%), Query Frame = 3
Query: 3 HNRWYTSTLELQLVSLAFCGECRSVPTLHVHIGEATPSSLWSHHESHKTPDE-------CSREDNISSRVPAVEAFSWTWAFEIPEEALLQRSTAFA----------------ACLASALWPQTLKRLVF--DSNMPVDTALWPASLQQISFGYGFDKPI 407
+NRW+TSTL +QL SL FC RS+PT+ +H+ P SLW +S +TP C + +S RVP + A W + E LLQ STA A AS + PQ L++L D+ V+ WPA LQ++SFG+ F++PI
Sbjct: 2 NNRWFTSTLNIQLASLEFCRASRSIPTIALHVDSRIPRSLWDGRKS-QTPSSTRGLEIRCWKARPLS-RVPLIRASRLNWGLSM--ETLLQ-STAVELWTGLKSLHLCGDVSDASPASMVQPQRLEQLEGNKDARDSVEAVPWPAFLQKLSFGFPFNRPI 156
BLAST of mRNA_E-fasciculatus_F_contig13834.2825.1 vs. uniprot
Match: D7G0Z9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z9_ECTSI) HSP 1 Score: 68.9 bits (167), Expect = 1.670e-10 Identity = 30/40 (75.00%), Postives = 31/40 (77.50%), Query Frame = 3
Query: 9 RWYTSTLELQLVSLAFCGECRSVPTLHVHIGEATPSSLWS 128
RWY STLELQLVSL FCG CR VPTLHV + TP SLWS
Sbjct: 59 RWYASTLELQLVSLEFCGACRHVPTLHVRVDRRTPRSLWS 98
BLAST of mRNA_E-fasciculatus_F_contig13834.2825.1 vs. uniprot
Match: A0A6H5KLS8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLS8_9PHAE) HSP 1 Score: 69.3 bits (168), Expect = 2.040e-9 Identity = 41/89 (46.07%), Postives = 53/89 (59.55%), Query Frame = 3
Query: 180 SSRVPAVEAFSWTWAFEIPEEALLQRST---------------AFAACLASALWPQTLKRLVFDSNMPVDTALWPASLQQISFGYGFDK 401
SSRVPAV+AF W E+P E LLQR+ + A+ L A+ P LKRL FDS+MPV+T WPASLQ++SF F++
Sbjct: 9 SSRVPAVQAFGLKW--ELPVEVLLQRAATKPRTGVECQRPTGPSSASRLQRAIRPPNLKRLEFDSDMPVNTVSWPASLQELSFDTEFNQ 95
BLAST of mRNA_E-fasciculatus_F_contig13834.2825.1 vs. uniprot
Match: A0A6H5JSE5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSE5_9PHAE) HSP 1 Score: 70.9 bits (172), Expect = 3.600e-9 Identity = 35/76 (46.05%), Postives = 44/76 (57.89%), Query Frame = 3
Query: 9 RWYTSTLELQLVSLAFCGECRSVPTLHVHIGEATPSSLWSHHESHKTPDECSREDNI------SSRVPAVEAFSWT 218
+WY STLELQLVSLAFCG CRS LH+H+ P SLW H+S+ TP++ + + V A E WT
Sbjct: 993 QWYASTLELQLVSLAFCGACRSAKMLHLHVDRGKPPSLWFPHKSYTTPNKRIAASRVWFDVGAADGVSAAEFCHWT 1068 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13834.2825.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig13834.2825.1 >prot_E-fasciculatus_F_contig13834.2825.1 ID=prot_E-fasciculatus_F_contig13834.2825.1|Name=mRNA_E-fasciculatus_F_contig13834.2825.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=289bp MPVDTALWPASLQQISFGYGFDKPIVDVVWPASLQQLSLGDSFDQPIVGAback to top mRNA from alignment at E-fasciculatus_F_contig13834:2..1503+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig13834.2825.1 ID=mRNA_E-fasciculatus_F_contig13834.2825.1|Name=mRNA_E-fasciculatus_F_contig13834.2825.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1502bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13834:2..1503+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13834:2..1503+ >mRNA_E-fasciculatus_F_contig13834.2825.1 ID=mRNA_E-fasciculatus_F_contig13834.2825.1|Name=mRNA_E-fasciculatus_F_contig13834.2825.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1734bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13834:2..1503+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |