mRNA_E-fasciculatus_F_contig13829.2818.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13829.2818.1
Unique NamemRNA_E-fasciculatus_F_contig13829.2818.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13829.2818.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13829contigE-fasciculatus_F_contig13829:154..518 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size365
Cds size324
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927876.3860292-CDS-E-fasciculatus_F_contig13829:153..4771622927876.3860292-CDS-E-fasciculatus_F_contig13829:153..477Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13829 154..477 +
1695995733.5431576-CDS-E-fasciculatus_F_contig13829:153..4771695995733.5431576-CDS-E-fasciculatus_F_contig13829:153..477Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13829 154..477 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927876.4033215-UTR-E-fasciculatus_F_contig13829:477..5181622927876.4033215-UTR-E-fasciculatus_F_contig13829:477..518Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13829 478..518 +
1695995733.5579538-UTR-E-fasciculatus_F_contig13829:477..5181695995733.5579538-UTR-E-fasciculatus_F_contig13829:477..518Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13829 478..518 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13829.2818.1prot_E-fasciculatus_F_contig13829.2818.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13829 154..477 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13829.2818.1

>prot_E-fasciculatus_F_contig13829.2818.1 ID=prot_E-fasciculatus_F_contig13829.2818.1|Name=mRNA_E-fasciculatus_F_contig13829.2818.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=108bp
VYAYSSADKKGHVIPGRTRGRPASSKAGWALTDGLERDLEMRFASGAPQQ
EKEGKRPRDAPQNCHTAADDRTLYTHAYLTRPSARNLKHRSRYTTTHTDA
GDVLIPP*
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mRNA from alignment at E-fasciculatus_F_contig13829:154..518+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13829.2818.1 ID=mRNA_E-fasciculatus_F_contig13829.2818.1|Name=mRNA_E-fasciculatus_F_contig13829.2818.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=365bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13829:154..518+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTCTACGCATACAGCAGTGCTGATAAAAAAGGGCATGTTATTCCCGGCAG
AACGAGAGGAAGACCAGCGTCTTCGAAGGCGGGGTGGGCGCTCACGGACG
GACTTGAGAGAGATCTTGAGATGCGCTTTGCGAGCGGGGCGCCTCAGCAA
GAGAAGGAGGGAAAACGTCCACGGGATGCCCCCCAGAATTGTCATACTGC
CGCAGATGACCGTACACTGTACACGCATGCCTACCTTACGCGTCCGTCCG
CACGAAACTTAAAGCACAGGAGTCGTTATACAACCACTCATACGGATGCC
GGAGACGTCTTGATTCCGCCGTAGACACTGCTAAAAAATACTCCATGTTA
TATCGTCCAAGCATA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13829:154..518+

>mRNA_E-fasciculatus_F_contig13829.2818.1 ID=mRNA_E-fasciculatus_F_contig13829.2818.1|Name=mRNA_E-fasciculatus_F_contig13829.2818.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=648bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13829:154..518+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTCTACGCATACAGCAGTGCTGATAAAAAAGGGCATGTTATTCCCGGCAG
AACGAGAGGAAGACCAGCGTCTTCGAAGGCGGGGTGGGCGCTCACGGACG
GACTTGAGAGAGATCTTGAGATGCGCTTTGCGAGCGGGGCGCCTCAGCAA
GAGAAGGAGGGAAAACGTCCACGGGATGCCCCCCAGAATTGTCATACTGC
CGCAGATGACCGTACACTGTACACGCATGCCTACCTTACGCGTCCGTCCG
CACGAAACTTAAAGCACAGGAGTCGTTATACAACCACTCATACGGATGCC
GGAGACGTCTTGATTCCGCCGTAGGTCTACGCATACAGCAGTGCTGATAA
AAAAGGGCATGTTATTCCCGGCAGAACGAGAGGAAGACCAGCGTCTTCGA
AGGCGGGGTGGGCGCTCACGGACGGACTTGAGAGAGATCTTGAGATGCGC
TTTGCGAGCGGGGCGCCTCAGCAAGAGAAGGAGGGAAAACGTCCACGGGA
TGCCCCCCAGAATTGTCATACTGCCGCAGATGACCGTACACTGTACACGC
ATGCCTACCTTACGCGTCCGTCCGCACGAAACTTAAAGCACAGGAGTCGT
TATACAACCACTCATACGGATGCCGGAGACGTCTTGATTCCGCCGTAG
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