mRNA_E-fasciculatus_F_contig13825.2816.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13825.2816.1
Unique NamemRNA_E-fasciculatus_F_contig13825.2816.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13825.2816.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13825contigE-fasciculatus_F_contig13825:420..918 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size499
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13825.2816.1prot_E-fasciculatus_F_contig13825.2816.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13825 446..781 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927876.2025704-UTR-E-fasciculatus_F_contig13825:419..4451622927876.2025704-UTR-E-fasciculatus_F_contig13825:419..445Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13825 420..445 +
1695995733.4569764-UTR-E-fasciculatus_F_contig13825:419..4451695995733.4569764-UTR-E-fasciculatus_F_contig13825:419..445Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13825 420..445 +
1622927876.2603111-UTR-E-fasciculatus_F_contig13825:781..9181622927876.2603111-UTR-E-fasciculatus_F_contig13825:781..918Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13825 782..918 +
1695995733.483379-UTR-E-fasciculatus_F_contig13825:781..9181695995733.483379-UTR-E-fasciculatus_F_contig13825:781..918Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13825 782..918 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927876.2416425-CDS-E-fasciculatus_F_contig13825:445..7811622927876.2416425-CDS-E-fasciculatus_F_contig13825:445..781Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13825 446..781 +
1695995733.4675071-CDS-E-fasciculatus_F_contig13825:445..7811695995733.4675071-CDS-E-fasciculatus_F_contig13825:445..781Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13825 446..781 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13825.2816.1

>prot_E-fasciculatus_F_contig13825.2816.1 ID=prot_E-fasciculatus_F_contig13825.2816.1|Name=mRNA_E-fasciculatus_F_contig13825.2816.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=112bp
MYQSFSLINSGCNPVYDRIGWMVSRDHVRLCVCDLSRLFWCRLDMSMHVG
RHTTYFSREALPKQPTVGDTRYQATRADFKARFLPSRKSGSAETASLQPS
HRERFSRTRIN*
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mRNA from alignment at E-fasciculatus_F_contig13825:420..918+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13825.2816.1 ID=mRNA_E-fasciculatus_F_contig13825.2816.1|Name=mRNA_E-fasciculatus_F_contig13825.2816.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=499bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13825:420..918+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACTCGATGTGTCTGCGGAGATAAATCATGTATCAGTCATTTTCCTTGATC
AACAGTGGATGCAACCCGGTGTACGATAGGATAGGATGGATGGTCTCGAG
AGACCATGTGCGTCTTTGTGTGTGTGATTTATCCCGACTTTTCTGGTGCC
GTCTAGACATGTCGATGCATGTTGGACGACATACAACCTACTTTTCGAGG
GAGGCTCTACCCAAGCAGCCTACCGTGGGTGACACAAGATACCAGGCCAC
CCGGGCCGATTTCAAAGCTCGATTTCTCCCCAGCAGGAAGAGTGGCAGCG
CCGAGACGGCGTCGTTGCAGCCGTCTCATCGAGAGAGATTTTCCCGAACA
CGCATCAATTGAGTTCGGCATCTCTTCTTGGTGGAGTAGTCACGCTTCTT
TGAAAACCGGGTCAGGGGGCGTGGTGTCTTTAGCCGTGTCACCTACTGTA
CGGTATTTTTGTCGTTAGCGTGAAGAAAGAGGCATATGTATCGCGGGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13825:420..918+

>mRNA_E-fasciculatus_F_contig13825.2816.1 ID=mRNA_E-fasciculatus_F_contig13825.2816.1|Name=mRNA_E-fasciculatus_F_contig13825.2816.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=672bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13825:420..918+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTATCAGTCATTTTCCTTGATCAACAGTGGATGCAACCCGGTGTACGA
TAGGATAGGATGGATGGTCTCGAGAGACCATGTGCGTCTTTGTGTGTGTG
ATTTATCCCGACTTTTCTGGTGCCGTCTAGACATGTCGATGCATGTTGGA
CGACATACAACCTACTTTTCGAGGGAGGCTCTACCCAAGCAGCCTACCGT
GGGTGACACAAGATACCAGGCCACCCGGGCCGATTTCAAAGCTCGATTTC
TCCCCAGCAGGAAGAGTGGCAGCGCCGAGACGGCGTCGTTGCAGCCGTCT
CATCGAGAGAGATTTTCCCGAACACGCATCAATTGAATGTATCAGTCATT
TTCCTTGATCAACAGTGGATGCAACCCGGTGTACGATAGGATAGGATGGA
TGGTCTCGAGAGACCATGTGCGTCTTTGTGTGTGTGATTTATCCCGACTT
TTCTGGTGCCGTCTAGACATGTCGATGCATGTTGGACGACATACAACCTA
CTTTTCGAGGGAGGCTCTACCCAAGCAGCCTACCGTGGGTGACACAAGAT
ACCAGGCCACCCGGGCCGATTTCAAAGCTCGATTTCTCCCCAGCAGGAAG
AGTGGCAGCGCCGAGACGGCGTCGTTGCAGCCGTCTCATCGAGAGAGATT
TTCCCGAACACGCATCAATTGA
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