mRNA_E-fasciculatus_F_contig1381.2811.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1381.2811.1
Unique NamemRNA_E-fasciculatus_F_contig1381.2811.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1381.2811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1381contigE-fasciculatus_F_contig1381:17855..18290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size436
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1381.2811.1prot_E-fasciculatus_F_contig1381.2811.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1381 17934..18263 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927875.332645-UTR-E-fasciculatus_F_contig1381:17854..179331622927875.332645-UTR-E-fasciculatus_F_contig1381:17854..17933Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1381 17855..17933 +
1695995732.9683847-UTR-E-fasciculatus_F_contig1381:17854..179331695995732.9683847-UTR-E-fasciculatus_F_contig1381:17854..17933Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1381 17855..17933 +
1622927875.356429-UTR-E-fasciculatus_F_contig1381:18263..182901622927875.356429-UTR-E-fasciculatus_F_contig1381:18263..18290Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1381 18264..18290 +
1695995732.9978647-UTR-E-fasciculatus_F_contig1381:18263..182901695995732.9978647-UTR-E-fasciculatus_F_contig1381:18263..18290Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1381 18264..18290 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927875.3449013-CDS-E-fasciculatus_F_contig1381:17933..182631622927875.3449013-CDS-E-fasciculatus_F_contig1381:17933..18263Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1381 17934..18263 +
1695995732.9816983-CDS-E-fasciculatus_F_contig1381:17933..182631695995732.9816983-CDS-E-fasciculatus_F_contig1381:17933..18263Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1381 17934..18263 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1381.2811.1

>prot_E-fasciculatus_F_contig1381.2811.1 ID=prot_E-fasciculatus_F_contig1381.2811.1|Name=mRNA_E-fasciculatus_F_contig1381.2811.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=110bp
MRQQRWRLTVGPTDLTDSNRISRQFCGSSNLKMRGGVAPACVGDESAERR
RDSQTVLLFRRQGCRHRPSALLLILPLLPPTAACKSHAPSSPQPPKKNGN
LSSRVRKWC*
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mRNA from alignment at E-fasciculatus_F_contig1381:17855..18290+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1381.2811.1 ID=mRNA_E-fasciculatus_F_contig1381.2811.1|Name=mRNA_E-fasciculatus_F_contig1381.2811.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=436bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1381:17855..18290+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGCGTTTGACCGAAACTGCCAGTAGTGTGGGGAATTGCAGAGGTGCGAG
ATCACTCACTGGGTCTCTCCGTACAGCGAATGAGACAGCAGAGGTGGCGA
TTGACCGTTGGACCGACAGATTTGACCGATAGCAACAGGATCTCACGGCA
ATTTTGCGGAAGTTCGAACTTAAAAATGAGAGGAGGCGTTGCTCCCGCTT
GTGTTGGGGACGAGTCCGCGGAACGACGCCGCGACTCGCAGACCGTTCTG
CTGTTCAGGCGCCAAGGGTGCAGACATCGCCCGTCTGCTCTACTGCTCAT
TCTCCCACTACTGCCTCCTACTGCTGCCTGCAAGTCTCACGCGCCATCAT
CACCCCAACCCCCCAAGAAGAATGGCAACCTCAGCTCCCGCGTCCGGAAG
TGGTGTTGAGGTGAAGCACGTGACAATCTCGCCAGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1381:17855..18290+

>mRNA_E-fasciculatus_F_contig1381.2811.1 ID=mRNA_E-fasciculatus_F_contig1381.2811.1|Name=mRNA_E-fasciculatus_F_contig1381.2811.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=660bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1381:17855..18290+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAGACAGCAGAGGTGGCGATTGACCGTTGGACCGACAGATTTGACCGA
TAGCAACAGGATCTCACGGCAATTTTGCGGAAGTTCGAACTTAAAAATGA
GAGGAGGCGTTGCTCCCGCTTGTGTTGGGGACGAGTCCGCGGAACGACGC
CGCGACTCGCAGACCGTTCTGCTGTTCAGGCGCCAAGGGTGCAGACATCG
CCCGTCTGCTCTACTGCTCATTCTCCCACTACTGCCTCCTACTGCTGCCT
GCAAGTCTCACGCGCCATCATCACCCCAACCCCCCAAGAAGAATGGCAAC
CTCAGCTCCCGCGTCCGGAAGTGGTGTTGAATGAGACAGCAGAGGTGGCG
ATTGACCGTTGGACCGACAGATTTGACCGATAGCAACAGGATCTCACGGC
AATTTTGCGGAAGTTCGAACTTAAAAATGAGAGGAGGCGTTGCTCCCGCT
TGTGTTGGGGACGAGTCCGCGGAACGACGCCGCGACTCGCAGACCGTTCT
GCTGTTCAGGCGCCAAGGGTGCAGACATCGCCCGTCTGCTCTACTGCTCA
TTCTCCCACTACTGCCTCCTACTGCTGCCTGCAAGTCTCACGCGCCATCA
TCACCCCAACCCCCCAAGAAGAATGGCAACCTCAGCTCCCGCGTCCGGAA
GTGGTGTTGA
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