mRNA_E-fasciculatus_F_contig138.2801.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig138.2801.1
Unique NamemRNA_E-fasciculatus_F_contig138.2801.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig138.2801.1 vs. uniprot
Match: A0A6H5JBJ1_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBJ1_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 4.100e-15
Identity = 36/51 (70.59%), Postives = 40/51 (78.43%), Query Frame = 3 
Query:  432 EEETVALSDGIRRSCCECGRKKRKCDGLVPCSRCLRAGVQCIYIKRKSPYP 584
            E   VA + G+RRSCCECGRKKRKCDG+ PCSRCLR+GVQC Y KRK   P
Sbjct:    8 EGSVVANNLGMRRSCCECGRKKRKCDGMAPCSRCLRSGVQCTYSKRKPHQP 58
[Close]
BLAST of mRNA_E-fasciculatus_F_contig138.2801.1 vs. uniprot
Match: D8LU27_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU27_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 6.110e-14
Identity = 33/44 (75.00%), Postives = 37/44 (84.09%), Query Frame = 3 
Query:  453 SDGIRRSCCECGRKKRKCDGLVPCSRCLRAGVQCIYIKRKSPYP 584
            S  +RRSCCEC R K+KCDGL PCSRC+ AGVQCIYIKRKS +P
Sbjct:   14 SSRMRRSCCECARHKKKCDGLTPCSRCIGAGVQCIYIKRKSTHP 57
[Close]
BLAST of mRNA_E-fasciculatus_F_contig138.2801.1 vs. uniprot
Match: D8LU21_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU21_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 3.330e-12
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 3 
Query:  459 GIRRSCCECGRKKRKCDGLVPCSRCLRAGVQCIYIKRKSPYP 584
            G+R+SCC CGRKKRKCDGL+PCSRCL AGV+C Y KRK   P
Sbjct:   17 GMRKSCCACGRKKRKCDGLMPCSRCLGAGVRCTYRKRKPHQP 58
[Close]
BLAST of mRNA_E-fasciculatus_F_contig138.2801.1 vs. uniprot
Match: D8LU17_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU17_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 8.040e-12
Identity = 38/62 (61.29%), Postives = 44/62 (70.97%), Query Frame = 3 
Query:  393 RSLEISTMNPSGGEEETV-ALSD-GIRRSCCECGRKKRKCDGLVPCSRCLRAGVQCIYIKRK 572
            R   IS M  S  E  +V AL++ G+RRSC EC RKKRKCDGL PCSRCL+AG +C Y KRK
Sbjct:   67 RDAAISAMCVSSKEAGSVLALTNAGMRRSCSECVRKKRKCDGLTPCSRCLKAGARCTYTKRK 128
[Close]
BLAST of mRNA_E-fasciculatus_F_contig138.2801.1 vs. uniprot
Match: A0A6H5K8E7_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8E7_9PHAE)

HSP 1 Score: 73.2 bits (178), Expect = 1.170e-11
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 3 
Query:  459 GIRRSCCECGRKKRKCDGLVPCSRCLRAGVQCIYIKRKSPYP 584
            G+R+SC  CGRKKRKCDGL+PCSRCLRAGV+C Y KRK   P
Sbjct:   17 GMRKSCGACGRKKRKCDGLMPCSRCLRAGVRCTYSKRKPHQP 58
[Close]
BLAST of mRNA_E-fasciculatus_F_contig138.2801.1 vs. uniprot
Match: A0A6H5JZG3_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZG3_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 2.150e-11
Identity = 33/54 (61.11%), Postives = 40/54 (74.07%), Query Frame = 3 
Query:  426 GGEEETVALSDGIRRSCCECGRKKRKCDGLVPCSRCLRAGVQCIYIKRKSPYPR 587
            GG E T A   G+RRSC ECGRKKRKCDGL+PC RC+ +G +C+Y KR+   PR
Sbjct:    3 GGMEPTPATL-GMRRSCSECGRKKRKCDGLMPCRRCVDSGSRCVYEKRRCHLPR 55
[Close]
BLAST of mRNA_E-fasciculatus_F_contig138.2801.1 vs. uniprot
Match: D8LU16_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU16_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 3.630e-9
Identity = 30/64 (46.88%), Postives = 39/64 (60.94%), Query Frame = 3 
Query:  399 LEISTMNPSGGEEETVALS------DGIRRSCCECGRKKRKCDGLVPCSRCLRAGVQCIYIKRK 572
            ++ S   PS G  +    +       GIRRSC ECGRKK++CDG  PC RC+R+G QC Y KR+
Sbjct:    1 MDTSGTEPSKGNNDDGTATCLRPILPGIRRSCSECGRKKKRCDGQRPCRRCVRSGSQCTYSKRR 64
[Close]
BLAST of mRNA_E-fasciculatus_F_contig138.2801.1 vs. uniprot
Match: D8LU13_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU13_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 3.880e-8
Identity = 31/60 (51.67%), Postives = 36/60 (60.00%), Query Frame = 3 
Query:  423 SGGEEETVA--LSDGIRRSCCECGRKKRKCDGLVPCSRCLRAGVQCIYIKRK--SPYPRG 590
            S G +ET       G+RRSC ECGRKK+ CDG  PC RC+R G  C Y KR+   P P G
Sbjct:    8 SDGRKETCLPPTLPGMRRSCSECGRKKKSCDGRRPCGRCVRTGSNCTYSKRRWHLPQPHG 67
[Close]
BLAST of mRNA_E-fasciculatus_F_contig138.2801.1 vs. uniprot
Match: A0A6H5JYW4_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYW4_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 1.080e-7
Identity = 28/54 (51.85%), Postives = 36/54 (66.67%), Query Frame = 3 
Query:  417 NPSGGEEETVALSD--GIRRSCCECGRKKRKCDGLVPCSRCLRAGVQCIYIKRK 572
            N + GE+ T       G+RRSC ECGRKK++CDG  PC RC+ +G QC YI R+
Sbjct:   12 NDNDGEKGTCLRPTLPGMRRSCTECGRKKKRCDGQQPCRRCVGSGGQCAYIMRR 65
[Close]
BLAST of mRNA_E-fasciculatus_F_contig138.2801.1 vs. uniprot
Match: D8LCU9_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCU9_ECTSI)

HSP 1 Score: 54.3 bits (129), Expect = 3.320e-5
Identity = 21/35 (60.00%), Postives = 26/35 (74.29%), Query Frame = 3 
Query:  468 RSCCECGRKKRKCDGLVPCSRCLRAGVQCIYIKRK 572
            RSC EC RKK+ CDG  PC RC+R+G QC Y +R+
Sbjct:    3 RSCSECARKKKSCDGKRPCGRCVRSGDQCTYSERR 37
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig138.2801.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5JBJ1_9PHAE4.100e-1570.59Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LU27_ECTSI6.110e-1475.00Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LU21_ECTSI3.330e-1273.81Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LU17_ECTSI8.040e-1261.29Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5K8E7_9PHAE1.170e-1173.81Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5JZG3_9PHAE2.150e-1161.11Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LU16_ECTSI3.630e-946.88Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LU13_ECTSI3.880e-851.67Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5JYW4_9PHAE1.080e-751.85Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LCU9_ECTSI3.320e-560.00Zn(2)-C6 fungal-type domain-containing protein n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig138contigE-fasciculatus_F_contig138:17376..20829 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size595
Cds size180
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig138.2801.1prot_E-fasciculatus_F_contig138.2801.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig138 17376..18363 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927874.6038065-CDS-E-fasciculatus_F_contig138:17375..174421622927874.6038065-CDS-E-fasciculatus_F_contig138:17375..17442Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig138 17376..17442 -
1695995732.6321096-CDS-E-fasciculatus_F_contig138:17375..174421695995732.6321096-CDS-E-fasciculatus_F_contig138:17375..17442Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig138 17376..17442 -
1622927874.6162145-CDS-E-fasciculatus_F_contig138:18250..183631622927874.6162145-CDS-E-fasciculatus_F_contig138:18250..18363Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig138 18251..18363 -
1695995732.6494663-CDS-E-fasciculatus_F_contig138:18250..183631695995732.6494663-CDS-E-fasciculatus_F_contig138:18250..18363Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig138 18251..18363 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927874.6259282-UTR-E-fasciculatus_F_contig138:18363..183991622927874.6259282-UTR-E-fasciculatus_F_contig138:18363..18399Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig138 18364..18399 -
1695995732.665111-UTR-E-fasciculatus_F_contig138:18363..183991695995732.665111-UTR-E-fasciculatus_F_contig138:18363..18399Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig138 18364..18399 -
1622927874.6414645-UTR-E-fasciculatus_F_contig138:20452..208291622927874.6414645-UTR-E-fasciculatus_F_contig138:20452..20829Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig138 20453..20829 -
1695995732.6783102-UTR-E-fasciculatus_F_contig138:20452..208291695995732.6783102-UTR-E-fasciculatus_F_contig138:20452..20829Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig138 20453..20829 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig138.2801.1

>prot_E-fasciculatus_F_contig138.2801.1 ID=prot_E-fasciculatus_F_contig138.2801.1|Name=mRNA_E-fasciculatus_F_contig138.2801.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=60bp
MNPSGGEEETVALSDGIRRSCCECGRKKRKCDGLVPCSRCLRAGVQCIYI
KRKSPYPRGR
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mRNA from alignment at E-fasciculatus_F_contig138:17376..20829-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig138.2801.1 ID=mRNA_E-fasciculatus_F_contig138.2801.1|Name=mRNA_E-fasciculatus_F_contig138.2801.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3454bp|location=Sequence derived from alignment at E-fasciculatus_F_contig138:17376..20829- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTGCCACGTGCTTTTCGGCGTGCTGGGGGAAGATTTGCTTGCTCAAGACG
CTAACAACAGGCGGTCCTTTCCTGTTACCTCCTAGTAGTGCAGAACGTAT
AGTCTACATCTCCACAGTGCCGTGCCGGGGAGGTTGGTACCAACTCATGC
CGCGGTGCCGGACTGGTTCCCAACGCAGATTTTTGTTCTGAAATTCTCTG
GACGCCTGTGAGATCCGCCCACTGCTGTGTTGGGTGCTGGCCTTCGACAA
GCTCCGCCAAGGCCCGTCTTTGACCAGTCTGACTGCGCCTTCACCATAGG
ACTTCACCACACGGTCCTCAGCTCTATCTCAGGTTCAACCCGTGCGCCTG
CTTTGATGATAAGCTATTTCCTACAAGGTGAGTTTCTCGGGTGCATGCAT
GCACACCATGTATGTAAATAGTGTATATATGCCCGCCACACCAACCATCG
CAGCCGGCGGAAGAACGTCATTCATCCGTCGGTCGGCGTTGCCAATTTCC
CGTCTCGCCCCCCATCACCTCTCAAGTTTTGGGGGGCCTATGCGCCCACG
GGGCACCTGTGCCGGGTAGATGCGGTAGGACCGAATACCCCAGCAGCAGT
AGATAGGTTAGCAATTTACGCAGCAACCAGTGCAATTCATCGAAGTGCGC
GACTACTGTTTGTGTTGTATTTCATTGTCCAAATAACAGTCCTTGTTGTG
GAGGTCAGGATATATATGGAGATTCAGGAAGCACATAGAATACACACGTA
CGTCCATGAAGAGTAGGATCCGAGGAATCTGTGATATAGACTAGAGTTGA
TAACTGCTGTTCTTCCCAAGAGTTCATAACTCTTGCTCCCGATTCTCGAC
AGCTGCAAATGGTTGATGAATTTTTTGGAGAATGGGAAATGAGTCTACGA
AGGCTCGCCCACTCTCTGGCCACCCTACCTTTCGACTGAAGTTCGCTCGG
TCCACGCTTACTTGTCATTCCTCGCCACATCGCACCAAAGAGAATAGCCA
GCCTCCGGTGACAGGTCATAGAAACCCCGTGTGACTCTGCTTACCCAGAG
AAATTGGCTCGATATTCCGGACTACATTCATTCGAACGGATCTTCTCATC
CTTGAAGGATGTTGAAACGGAACACGGTAGACTAAACTCTGAGAATATGC
ATAGACTACTAGACTACACATCAACGGCGGAGGAACAATATGCATACTAC
AGTACATAGACTACGCATCAACGGCGGAGGAACAACATACATGTTACGTA
GGATACAACGCACACTGCTCGGCTCTTGCATGTTGCAGTATCGCCAAACG
AGACAGACACAACCGTCGTAGGTCGCACGAACGCGCTTGTAGTGCTGCTA
CTGCTGTTGCTGCTGCTGTTGCTGCTGCTGCTGAAATGGCGATGACTCCC
ATCTATCTTATTTTGCAGGCATGCATACGAGAAACAAAGCCTGGCCCAAA
AACAGGCTTAGTCTACAGGTTCTGGTGTTTTTTTCCGTGGTATTGGTGGC
ATATCAGGTTTGTTTCTTGGTGGCCCCTCCCCACACACCGAAGCAACAGC
AATGACAAGGACACCCGCCGCGAGCTTTGTGTATGGAACCCTTCCCTCGC
CAGTGCTGTCTTGCCCCTCCCAGCGGTGTTGCGTGGTTAGCTGGGTTTTC
CTCTGTTTCAGGAGATCTCCGATTCTTCACAGATATTCCCATTATCTACA
ACTCCCCGGCAAAAGGAGCAAAATATTCGATGCTTTTGGGGACATAAAAC
ATACTCCTGTCAAGCACGGCCATGCCGCTGCCGGAGCGCCAACAAAATGG
TGTGACGAGTGCCCTGATTGGCTTCCTCCTCGCCAGCCAGCAGATCGTAA
ATCGGTGCTTTATAGACTTCGTTGGTGGAAAAAAGACGACTATTTTCTGA
CGTGTCAAGAACTGTCGGGTTTTGCAGAAGGGCCCCAATGTACATCGCGT
TGGTTGGAAGATCCCGGTATGTATGTGTAGGCCCTCGACACCCAATATTC
GCGGATTCCAAACACGGAACGGCGAAAAGGAAACCGGTCCTTTTGTCAGT
GATGTCACATCGACCGCGATGAGCCTGCCCGATTCGTGAAAATGTCCGGG
AAATAGCGGCTGATTGGAACGACCCTTGTTAGAGAGATTTTTTCTCCTGG
AGGATGAAAGAAAAAGCTAAAAAAACTGTCGCGCTTCGCACTCCGCGGCT
AACTCTAATACTACCAGTGCGAGTGCTGCTGTTGCTACAGTATGATCATG
TGATTACACAGAGACTTCTTCCAGGATGTGGTGATGCCACTTGCGCGCAC
GGTGGGCACCTCGTGATAGAGCCACAACGTCTTCTGAACAATACCAATTT
TTACCTTATCCCCTACGGACTGGGTTGATTTGATTTTTATTCCCGGCTCG
CTCCGCTTATGAAACCATGCATGCATGCAGCGTAACGGGGCACGACGTAG
TCTAGAGATTTCGACCATGAATCCCAGTGGCGGGGAAGAGGAAACCGTGG
CTTTGAGCGATGGGATACGCAGGAGCTGCTGCGAATGTGGGCGGAAGAAA
AGGAAGTGCGATGGCCTGGTGCCCTGCAGGTGTGGGTCATTTTGGCGTGA
ATGTTGGCCTTTAGTTGGAAGTCATGATGCCCCGTCTAGTTGTCGGTACA
AGTATATCGGTCTTGATCGACTGGCTCTTAAGCACGACCGAAGGAGCACC
TACATGTGCTAAAGTTCCGCCCCACACACGCGATCCATAAGATGAACTTG
GAAGTAAGGTTTCAGATTAACAGCAGCAATCCTGGGGGCGTTTCTGGATT
CCAACAGTCTCAGATATACGTGGTGTAGCGGAAAACGGCGGCTGTTTGTT
CGGGGCGTTGGCCGGCATCGCTCCTGGGATCTCGGCGAATGCAAACACTG
CGAACCTAGAACTGCGACCATCCCGAGTGTAGCAGGGTTTGTTGATGACG
GGGCGAAACGTAACCGAGGGCAGGACAAAGCCTTACCAACGTGTTACCGG
ATGCCCCACACGTAACAAACATTCGAGGCACAGCCACTAACGTCCTTGTT
GCTCACAGCTGTCCAAAACATGCTGCTGCGTCAGTGGTGGGTGGGTTGTT
TCGACGGGTGGTTTGCAGCAGTGGGTTGGCGAAAGAACGAAGTTGTTATT
TAAACTTGCACTACAGAAACCGGAGCTCTTTCTACATCGCCTTGTACTCT
CACCGCGCTGACGCGTCCCGACGTTGAAACACTTGTCGCGCAATTCATGA
TTCCTATGCCCCACCACCTAAATCCCACTAGTGTGTCGCACGTGCGTACA
CAACCGACTGCCAAGACCAACACCACGTAGATCACCGTGCACCAGTGATC
GTACGCTGTTGACCCGCCTCGCTTACGTCTTGCACAGCCGATGCCTACGA
GCCGGAGTCCAATGCATCTACATTAAGAGAAAGTCGCCCTATCCACGTGG
ACGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig138:17376..20829-

>mRNA_E-fasciculatus_F_contig138.2801.1 ID=mRNA_E-fasciculatus_F_contig138.2801.1|Name=mRNA_E-fasciculatus_F_contig138.2801.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=360bp|location=Sequence derived from alignment at E-fasciculatus_F_contig138:17376..20829- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAATCCCAGTGGCGGGGAAGAGGAAACCGTGGCTTTGAGCGATGGGAT
ACGCAGGAGCTGCTGCGAATGTGGGCGGAAGAAAAGGAAGTGCGATGGCC
TGGTGCCCTGCAGATGAATCCCAGTGGCGGGGAAGAGGAAACCGTGGCTT
TGAGCGATGGGATACGCAGGAGCTGCTGCGAATGTGGGCGGAAGAAAAGG
AAGTGCGATGGCCTGGTGCCCTGCAGCCGATGCCTACGAGCCGGAGTCCA
ATGCATCTACATTAAGAGAAAGTCGCCCTATCCACGTGGACGTCCGATGC
CTACGAGCCGGAGTCCAATGCATCTACATTAAGAGAAAGTCGCCCTATCC
ACGTGGACGT
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