mRNA_E-fasciculatus_F_contig1001.28.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1001.28.1
Unique NamemRNA_E-fasciculatus_F_contig1001.28.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1001.28.1 vs. uniprot
Match: D7FQ16_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ16_ECTSI)

HSP 1 Score: 466 bits (1200), Expect = 1.180e-161
Identity = 246/270 (91.11%), Postives = 254/270 (94.07%), Query Frame = 1 
Query:    1 MADLKLSAPKRLGRTVVLGYCDIGAAGVRVLEGMSGASQMTGEGACSRLRETGREALAFSGMGAAVFDGVPALEAVHFDGEKGSAGDTDQPSVTLLKLNTTVGQDLSASLSLSLVDLLVARRPTLDRLIIAAAVQPPKRHQIPAEAATLPPDVVCTFSCGGVDINSSPSLGSLSSLPSLPTGARIADSFLMTLVRLCRLEDVPLTVLARVGYRTTGAAADVDGTDEAINGLGQCLAQAVGLEFNSNKACGVRRSRGWKGSPSAQVVPGYI 810
            MAD  LSAPKRLG+TV+LGYCDIGAAGVRVLEGMSGASQMTGEGACSRLRETGREALAFSGMGAAVFDGVPALEAVHF+    SAG TD+PSVTLLKLNT VGQ LSASLSLSLVDLLVARR TLDRLIIAAAVQPPKRHQIPAEAAT+PPD VCTFSCGGVD NSSP   SLS+LPSLPTGARIADSFL TLVRLCRLEDVPLTVLARVGYRTTGAAADVDGTDEAINGLGQCLAQAVGLEFNSN+ACGVRRS+GWKGSPSAQVVPGYI
Sbjct:    1 MADFTLSAPKRLGKTVILGYCDIGAAGVRVLEGMSGASQMTGEGACSRLRETGREALAFSGMGAAVFDGVPALEAVHFES---SAGGTDEPSVTLLKLNTAVGQGLSASLSLSLVDLLVARRTTLDRLIIAAAVQPPKRHQIPAEAATIPPDAVCTFSCGGVDSNSSPLPASLSTLPSLPTGARIADSFLTTLVRLCRLEDVPLTVLARVGYRTTGAAADVDGTDEAINGLGQCLAQAVGLEFNSNRACGVRRSKGWKGSPSAQVVPGYI 267
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1001.28.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQ16_ECTSI1.180e-16191.11Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1001contigE-fasciculatus_F_contig1001:1021..5212 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_007850.1
Exons5
Model size1426
Cds size813
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1001.28.1prot_E-fasciculatus_F_contig1001.28.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1001 1021..4599 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927502.9903286-CDS-E-fasciculatus_F_contig1001:1020..11051622927502.9903286-CDS-E-fasciculatus_F_contig1001:1020..1105Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1001 1021..1105 +
1695995566.171746-CDS-E-fasciculatus_F_contig1001:1020..11051695995566.171746-CDS-E-fasciculatus_F_contig1001:1020..1105Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1001 1021..1105 +
1622927503.0055232-CDS-E-fasciculatus_F_contig1001:2604..27891622927503.0055232-CDS-E-fasciculatus_F_contig1001:2604..2789Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1001 2605..2789 +
1695995566.1798635-CDS-E-fasciculatus_F_contig1001:2604..27891695995566.1798635-CDS-E-fasciculatus_F_contig1001:2604..2789Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1001 2605..2789 +
1622927503.0223882-CDS-E-fasciculatus_F_contig1001:3186..33391622927503.0223882-CDS-E-fasciculatus_F_contig1001:3186..3339Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1001 3187..3339 +
1695995566.1888573-CDS-E-fasciculatus_F_contig1001:3186..33391695995566.1888573-CDS-E-fasciculatus_F_contig1001:3186..3339Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1001 3187..3339 +
1622927503.040299-CDS-E-fasciculatus_F_contig1001:3849..41041622927503.040299-CDS-E-fasciculatus_F_contig1001:3849..4104Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1001 3850..4104 +
1695995566.197779-CDS-E-fasciculatus_F_contig1001:3849..41041695995566.197779-CDS-E-fasciculatus_F_contig1001:3849..4104Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1001 3850..4104 +
1622927503.0582447-CDS-E-fasciculatus_F_contig1001:4464..45991622927503.0582447-CDS-E-fasciculatus_F_contig1001:4464..4599Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1001 4465..4599 +
1695995566.207764-CDS-E-fasciculatus_F_contig1001:4464..45991695995566.207764-CDS-E-fasciculatus_F_contig1001:4464..4599Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1001 4465..4599 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927503.0838165-UTR-E-fasciculatus_F_contig1001:4599..52121622927503.0838165-UTR-E-fasciculatus_F_contig1001:4599..5212Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1001 4600..5212 +
1695995566.219801-UTR-E-fasciculatus_F_contig1001:4599..52121695995566.219801-UTR-E-fasciculatus_F_contig1001:4599..5212Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1001 4600..5212 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1001.28.1

>prot_E-fasciculatus_F_contig1001.28.1 ID=prot_E-fasciculatus_F_contig1001.28.1|Name=mRNA_E-fasciculatus_F_contig1001.28.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=271bp
MADLKLSAPKRLGRTVVLGYCDIGAAGVRVLEGMSGASQMTGEGACSRLR
ETGREALAFSGMGAAVFDGVPALEAVHFDGEKGSAGDTDQPSVTLLKLNT
TVGQDLSASLSLSLVDLLVARRPTLDRLIIAAAVQPPKRHQIPAEAATLP
PDVVCTFSCGGVDINSSPSLGSLSSLPSLPTGARIADSFLMTLVRLCRLE
DVPLTVLARVGYRTTGAAADVDGTDEAINGLGQCLAQAVGLEFNSNKACG
VRRSRGWKGSPSAQVVPGYI*
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mRNA from alignment at E-fasciculatus_F_contig1001:1021..5212+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1001.28.1 ID=mRNA_E-fasciculatus_F_contig1001.28.1|Name=mRNA_E-fasciculatus_F_contig1001.28.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4192bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1001:1021..5212+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGGACCTTAAACTATCTGCGCCGAAGCGGCTGGGTAGAACTGTCGT
TCTGGGCTACTGCGACATCGGCGCAGCAGGCGTTCGTGAGTGCCATGCAC
AGCAGAACAGCATCGTGCGACTAGAGCACCAACACGAGCCAGCGCTACCT
GTAGGCTGCACGAACAACAGCAGCGCCAACAGCCGCAGCACTACGGAGTA
CTTGCTGTTGCCCTTCTAAACGTAACATTTTTTCACGCAAAGAGTACATT
ATACTAGTGTCACAAATGTGTTCTACAGACTACGTTTCGTAGACCACCGT
TGACGTGAGATATCATACCCCCTGTGAGGCGGATTTAAAACCTGGATTAC
TCCACAACAGAGTAGCGGTACTGAAAATGGCCGCCTTGGAATCGCCTCGT
CGAGAGCTTTCCGACAATGTGTCACTTGGTTGGGGAATCCTCTTCGTCGT
GGAGTAGTCTAATCGAGCTTTGAAAATCGGTCCAGGGTGTGTGATATCTT
AAAATTAACCTACATGTAGTCACCTAGACTTCTACAGAACCTACATGTAG
TCACCTAGACTTCTACAGAGTGTGCCTACATGTAGTCACCTAGACTTCTA
CAGAGTGTGCGGGACGTATGCATGCGCCTTCTGGTTCACTGGCTAAGTCC
CCATACTAACCCTCGCTTGTGGAGCGAGGGAGCCGGACAACACAAGAGGG
GCTCTGGATCTGCTGTTTTCCCACCGAAGTGCAACACTGAGTAGCCGAGT
AGATCGGGTCTTCCTCACGCTACACATCAGACAGCAAAATACATTCCAAC
GCACATTGTATGCAAAATCCAAACCGCCATCACAACGTGGTTGGTAGCCA
CACGCTCCATGAGTTCAGGCACCGCGTGCACGCCACGTGCATGTACGAGC
GTGCACGCGGCGCCTGTAGTCATGACATGTGCGGCTACCAACCACGTTAT
GCTTGCAGTTTTGGGATGTACAAGCGTTTGGGTTCCTAGACAGACGTTCC
GCGGTGTGTGATGTCCGGACGATGTTGTGTTTCGGAGTCTTGTTGCAAGT
TGTGGGGGAGTGCGGTGTGTGGTGCGAGGGTGCGAGTGAGGCAGCACGCG
GCGGCTTGGCAGCTAGCTGGCTTTACGCGACGGATACCGTTTGAAGATAA
ACGACAACGGGCGCTTTTTTGCCACTTTGAACACACAACAGCGCTCTCTC
TGCACAAGCATTACGTTCTAATGTCTGTATTCAAATAACCTTTTTAACAG
TGCCGGAATCGCGAACCAGCGCACGGCATGAAGATACACCTCCACTTTCA
TCGAAAGCGAGCTGATGTCGAAACTTGAGCGCGCTGACGCGGCTCGAAGG
ATGGAACGACGGATAGATCTGGCGCTTTGGCACACCGTCCAGCAGTAGCT
GGTTACCCCCACGAGTCCCACATTTTCCTGTAGGAATAGCGGCTGAAAAG
GTGTGATTCCATTGTCTGTTTTGAGTTCTACAAACGAAGAACACAAGAAG
AGCTTATACTCACGTACTGAACCACCGGTGAAATGCCACCGTCCCCTACG
ATAACTCTTTCCCTTTTGGAACCCCATTCGGAAGGCGTTCTTGAGGGCAT
GTCGGGGGCATCACAGATGACGGGCGAAGGGGCTTGTTCGAGGTTGCGCG
AGACGGGGAGGGAGGCCCTCGCTTTCTCGGGTATGGGGGCTGCGGTTTTC
GATGGGGTTCCAGCTTTGGAAGCCGTGCACTTCGACGGTGAGAAGGGCTC
TGCAGGCGATACTGACCAGGTGTGGTGAAGGTTAAGGTTCGTGTTTTCAG
GCCGTGACTGTCTTCGGGTGTGGTTGCGTGTACACTACTTGTACGTCTGT
CGCAGGTCACTCTGTTGCTCGAGCGGAGCACTTGCTGCTTGGCAGTGCTT
ATTGTCCATCTTACACTTTTCAGTTTTTCTTGTTTCCACTTTTGTTTCCA
CTTTTGTCCGATGGTATTTCAATTTTGCGATTTCCCTGGATTCGTGTTTA
CTCCCATCCACCAGGCATGTTCCCCACGCCCTCCTCAAGAAAACCAACCT
CCGTGAAATATACCTTCAAATCCCATGCTCGTTTTTGCTCCCCCTCGTCG
TTTCTGCCTGCTGCGTTCTGATACAATCTCGCCTCCCTCTTTGCGCGTTT
TATCTTCCGTGTTCAGCCGTCCGTCACCCTGCTTAAGCTCAACACAACGG
TTGGCCAGGACCTATCGGCGTCGTTGTCGTTGTCCCTCGTCGACCTACTC
GTCGCGCGAAGACCGACGCTCGACAGGCTCATCATCGCAGCTGCTGTACA
GCCCCCCAAGAGGCACCAGGTGAATTTTGCCGATCGAACAACAACAACCC
TGTTTTGGGCTGATTGACGTGCCTGATCTCTTTTAGCACGCGCCTGCTAT
GGCACCTTTTTCCTGCATGAAAGTTCGGCTGATTGTCACAATTGGCTGGT
GTGAGTGTGCGCCCCCCTGTGCTACATGAACGAACCTGCGCTTGCACGAT
TGAAGCTTCCTGCGCTGGTCCAAGTGCCCTTTTCCTTGTTTTATGATATC
AAGACGAAGGTGGTGCTGCAAAATAACGCGAGCAAGTTCTCACATCGTTT
TCGCGTCACGGAGAAGCACCTCGTTTACCCTTTGTTTGCTCTGTCTGTCT
GTCTCTCTCTCTTCTGCTTCTCGGTCTTTCTCTCTTCCAAGTACACAGCA
CACCTGTCACCCAACGAACGCTCACACGCCCGTGTCCTTCCTCCTCTCTC
CTTTCCTGACGCACGCTCGCCGACCTCTTCCTTTCTTATTCCCGAAAAAC
AAATTTCACACCTCTGCGGGCACCGTCAGATCCCGGCAGAAGCAGCAACC
CTTCCACCGGACGTTGTGTGCACTTTCTCCTGCGGCGGCGTGGACATCAA
CTCCTCTCCTTCGCTGGGTTCGTTGTCGAGCCTTCCGTCGTTGCCCACCG
GGGCCCGCATCGCCGATTCCTTCCTCATGACCCTGGTGCGACTCTGCAGG
CTGGAAGACGTGCCGCTGACGGTGTTGGCACGGGTGGGCTACCGCACCAC
GGGAGCGGCCGCGGATGTGGATGGGACGGACGAGGTAAGAGTAACGTGTA
CGGGGGTGGTGGAAGTAGGAGGGTAGTACGACTCTTGAGAATCGAACATG
TGTTAAAAACAGCCAAGATCATCGAGGATGTCTGGGAGTGATCTGTGTGA
CGTTTGAAGGAGGAACGCGTGTAGCGCCTGTAGATCGTGTGTTGTACTAT
TGTCGGATGGCAAGATATACATCACCCACCTATTGTGAAACTGTTATTCC
CCTATTTTCCTTTAGTTTTCAGATCGAACGCTCAAGTGCATGGTGTATGA
CGCGTTCGAACCCCCAACCGGCGCACTGCTCCTTACTCCCGCGCCTGTCC
TCCAAATGTTGGTTTGCTTTACGTGGCTGCTGTGGTATGCGCAGGCAATC
AACGGTCTCGGGCAGTGCCTTGCACAGGCAGTGGGGCTGGAGTTTAACTC
GAACAAGGCATGCGGAGTTCGAAGATCCAGGGGCTGGAAAGGCAGTCCCT
CGGCACAGGTCGTGCCCGGGTACATTTAGCGGGAGAGCGCGACTTTTCTA
GAATATATTTTGGTGATCATCGCAGCTGTTGTTGGCGTGTTTCGTGTGTT
ACCTCTCTGTTCGTGTTTTATTTTGGAGCCATCGCCCATTGACGTACGCG
TGGTAAGGGTTCATGCAGGACGGGGTGGCAAAGTCTACACGTAGTGTTGG
CTGGTTCAACGTGTTACATGGCGTGCAAGTTGTAGCTCGCCTGAATGGAT
GACACAGGCTTCCTGTGGTGCTCTGTTCTTGCGCATGTGTCGTCGTCGGT
ATCTACCGACTCTTATGGGAGATGTCCCTGCTTGCCGTACATGGTTGCGA
AGCTTGCGAATCACACATTCGAGCGCGCGTGTGCGACAAAAAGGAACATT
ACGGTGCTTCACCGCGATACGAAACACCCAGGTGCATGGCGCTCCACATG
CTTCGATTGTGAGCGGGGTTGATCATTCCGACAAAATTCAGGAGAGATAG
AGGGACCGGAACCCTGTCTTCCTCACACAGCCAGGAGCGTAGGACGTTAT
CTTTTGTGCCAGAGAGGAAGGAGAGAGAGGGGGATCAACCAAGACACTAT
GGTGGCGTGTCCCCAGTTATCAGGCGTTTGAATGTTTACCCA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1001:1021..5212+

>mRNA_E-fasciculatus_F_contig1001.28.1 ID=mRNA_E-fasciculatus_F_contig1001.28.1|Name=mRNA_E-fasciculatus_F_contig1001.28.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1626bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1001:1021..5212+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGGACCTTAAACTATCTGCGCCGAAGCGGCTGGGTAGAACTGTCGT
TCTGGGCTACTGCGACATCGGCGCAGCAGGCGTTCATGGCGGACCTTAAA
CTATCTGCGCCGAAGCGGCTGGGTAGAACTGTCGTTCTGGGCTACTGCGA
CATCGGCGCAGCAGGCGTTCGCGTTCTTGAGGGCATGTCGGGGGCATCAC
AGATGACGGGCGAAGGGGCTTGTTCGAGGTTGCGCGAGACGGGGAGGGAG
GCCCTCGCTTTCTCGGGTATGGGGGCTGCGGTTTTCGATGGGGTTCCAGC
TTTGGAAGCCGTGCACTTCGACGGTGAGAAGGGCTCTGCAGGCGATACTG
ACCAGGCGTTCTTGAGGGCATGTCGGGGGCATCACAGATGACGGGCGAAG
GGGCTTGTTCGAGGTTGCGCGAGACGGGGAGGGAGGCCCTCGCTTTCTCG
GGTATGGGGGCTGCGGTTTTCGATGGGGTTCCAGCTTTGGAAGCCGTGCA
CTTCGACGGTGAGAAGGGCTCTGCAGGCGATACTGACCAGCCGTCCGTCA
CCCTGCTTAAGCTCAACACAACGGTTGGCCAGGACCTATCGGCGTCGTTG
TCGTTGTCCCTCGTCGACCTACTCGTCGCGCGAAGACCGACGCTCGACAG
GCTCATCATCGCAGCTGCTGTACAGCCCCCCAAGAGGCACCAGCCGTCCG
TCACCCTGCTTAAGCTCAACACAACGGTTGGCCAGGACCTATCGGCGTCG
TTGTCGTTGTCCCTCGTCGACCTACTCGTCGCGCGAAGACCGACGCTCGA
CAGGCTCATCATCGCAGCTGCTGTACAGCCCCCCAAGAGGCACCAGATCC
CGGCAGAAGCAGCAACCCTTCCACCGGACGTTGTGTGCACTTTCTCCTGC
GGCGGCGTGGACATCAACTCCTCTCCTTCGCTGGGTTCGTTGTCGAGCCT
TCCGTCGTTGCCCACCGGGGCCCGCATCGCCGATTCCTTCCTCATGACCC
TGGTGCGACTCTGCAGGCTGGAAGACGTGCCGCTGACGGTGTTGGCACGG
GTGGGCTACCGCACCACGGGAGCGGCCGCGGATGTGGATGGGACGGACGA
GATCCCGGCAGAAGCAGCAACCCTTCCACCGGACGTTGTGTGCACTTTCT
CCTGCGGCGGCGTGGACATCAACTCCTCTCCTTCGCTGGGTTCGTTGTCG
AGCCTTCCGTCGTTGCCCACCGGGGCCCGCATCGCCGATTCCTTCCTCAT
GACCCTGGTGCGACTCTGCAGGCTGGAAGACGTGCCGCTGACGGTGTTGG
CACGGGTGGGCTACCGCACCACGGGAGCGGCCGCGGATGTGGATGGGACG
GACGAGGCAATCAACGGTCTCGGGCAGTGCCTTGCACAGGCAGTGGGGCT
GGAGTTTAACTCGAACAAGGCATGCGGAGTTCGAAGATCCAGGGGCTGGA
AAGGCAGTCCCTCGGCACAGGTCGTGCCCGGGTACATTTAGGCAATCAAC
GGTCTCGGGCAGTGCCTTGCACAGGCAGTGGGGCTGGAGTTTAACTCGAA
CAAGGCATGCGGAGTTCGAAGATCCAGGGGCTGGAAAGGCAGTCCCTCGG
CACAGGTCGTGCCCGGGTACATTTAG
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