mRNA_E-fasciculatus_F_contig13798.2798.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13798.2798.1
Unique NamemRNA_E-fasciculatus_F_contig13798.2798.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13798.2798.1 vs. uniprot
Match: D7G1I0_ECTSI (RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1I0_ECTSI)

HSP 1 Score: 502 bits (1292), Expect = 1.050e-172
Identity = 256/257 (99.61%), Postives = 257/257 (100.00%), Query Frame = 1 
Query:    1 CEDPGDVLLFLTGEVEIEDACRAIRAEVEKSQDPTKDGELAVYPLYSSLPPAAQQKIFREAPGPKFPGGPVGRKVVVSTNVAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISRASAQQRSGRAGRTRPGKCFRLYTEQSFKEELLEQTYPEILRSKMSNTVLTLLKLGVEDLVHFDFMDPPAPETLMRALELLNYLGALDDEGSLTDLGNKMSELPLDPQLAKVLLASPDYGCSNEVLSIVAMLSVPQV 771
            CEDPGDVLLFLTGEVEIEDACRAIRAEVEKSQDPTK+GELAVYPLYSSLPPAAQQKIFREAPGPKFPGGPVGRKVVVSTNVAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISRASAQQRSGRAGRTRPGKCFRLYTEQSFKEELLEQTYPEILRSKMSNTVLTLLKLGVEDLVHFDFMDPPAPETLMRALELLNYLGALDDEGSLTDLGNKMSELPLDPQLAKVLLASPDYGCSNEVLSIVAMLSVPQV
Sbjct:  259 CEDPGDVLLFLTGEVEIEDACRAIRAEVEKSQDPTKEGELAVYPLYSSLPPAAQQKIFREAPGPKFPGGPVGRKVVVSTNVAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISRASAQQRSGRAGRTRPGKCFRLYTEQSFKEELLEQTYPEILRSKMSNTVLTLLKLGVEDLVHFDFMDPPAPETLMRALELLNYLGALDDEGSLTDLGNKMSELPLDPQLAKVLLASPDYGCSNEVLSIVAMLSVPQV 515
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BLAST of mRNA_E-fasciculatus_F_contig13798.2798.1 vs. uniprot
Match: A0A6H5L043_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L043_9PHAE)

HSP 1 Score: 463 bits (1191), Expect = 2.560e-157
Identity = 256/347 (73.78%), Postives = 257/347 (74.06%), Query Frame = 1 
Query:    1 CEDPGDVLLFLTGEVEIEDACRAIRAEVEKSQDPTKDGELAVYPLYSSLPPAAQQKIFREAPGPKFPGGPVGRKVVVSTNVAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISRASAQQRSGRAGRTRPGKCFRLYTEQSFKEELLEQTYPEILRSKMSNTV------------------------------------------------------------------------------------------LTLLKLGVEDLVHFDFMDPPAPETLMRALELLNYLGALDDEGSLTDLGNKMSELPLDPQLAKVLLASPDYGCSNEVLSIVAMLSVPQV 771
            CEDPGDVLLFLTGEVEIEDACRAIRAEVEKSQDPTK+GELAVYPLYSSLPPAAQQKIFREAPGPKFPGGPVGRKVVVSTNVAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISRASAQQRSGRAGRTRPGKCFRLYTEQSFKEELLEQTYPEILRSKMSNTV                                                                                          LTLLKLGVEDLVHFDFMDPPAPETLMRALELLNYLGALDDEGSLTDLGNKMSELPLDPQLAKVLLASPDYGCSNEVLSIVAMLSVPQV
Sbjct:  193 CEDPGDVLLFLTGEVEIEDACRAIRAEVEKSQDPTKEGELAVYPLYSSLPPAAQQKIFREAPGPKFPGGPVGRKVVVSTNVAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISRASAQQRSGRAGRTRPGKCFRLYTEQSFKEELLEQTYPEILRSKMSNTVAEATFTDGLGDPVHLLRVHRITEAVREHGFGNLLDAIAAAPPALGNPELPGADGAASPPDAAAAAADTMAFPCTMGALLSEMLAIFDSSVLTLLKLGVEDLVHFDFMDPPAPETLMRALELLNYLGALDDEGSLTDLGNKMSELPLDPQLAKVLLASPDYGCSNEVLSIVAMLSVPQV 539
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BLAST of mRNA_E-fasciculatus_F_contig13798.2798.1 vs. uniprot
Match: A0A836CBU4_9STRA (RNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBU4_9STRA)

HSP 1 Score: 430 bits (1106), Expect = 1.320e-144
Identity = 215/257 (83.66%), Postives = 237/257 (92.22%), Query Frame = 1 
Query:    1 CEDPGDVLLFLTGEVEIEDACRAIRAEVEKSQDPTKDGELAVYPLYSSLPPAAQQKIFREAPGPKFPGGPVGRKVVVSTNVAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISRASAQQRSGRAGRTRPGKCFRLYTEQSFKEELLEQTYPEILRSKMSNTVLTLLKLGVEDLVHFDFMDPPAPETLMRALELLNYLGALDDEGSLTDLGNKMSELPLDPQLAKVLLASPDYGCSNEVLSIVAMLSVPQV 771
            CE+PGD+L+FLTGE+EIE AC  IR+E  +       GE+ VYPLYSSL P AQQKIFR+APGPK+PGGP GRKVVVSTN+AETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISRASA+QRSGRAGRTRPGKCFRLYTE+SF+EELLEQTYPEILRSKMS  VLTLLKLGVEDLVHFDFMDPPAPETLMRALELLNYLGALDDEG LT++G++MSELP+DPQLAK+L+ASPDY CSNE+L+IVAMLSVPQV
Sbjct:  261 CEEPGDILVFLTGELEIETACAQIRSECAQFAGSETVGEVMVYPLYSSLAPQAQQKIFRDAPGPKYPGGPPGRKVVVSTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISRASAKQRSGRAGRTRPGKCFRLYTERSFQEELLEQTYPEILRSKMSTVVLTLLKLGVEDLVHFDFMDPPAPETLMRALELLNYLGALDDEGCLTEIGSQMSELPVDPQLAKMLIASPDYNCSNEILTIVAMLSVPQV 517
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BLAST of mRNA_E-fasciculatus_F_contig13798.2798.1 vs. uniprot
Match: A0A7S2UZ15_9STRA (RNA helicase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZ15_9STRA)

HSP 1 Score: 423 bits (1088), Expect = 8.300e-142
Identity = 210/257 (81.71%), Postives = 234/257 (91.05%), Query Frame = 1 
Query:    1 CEDPGDVLLFLTGEVEIEDACRAIRAEVEKSQDPTKDGELAVYPLYSSLPPAAQQKIFREAPGPKFPGGPVGRKVVVSTNVAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISRASAQQRSGRAGRTRPGKCFRLYTEQSFKEELLEQTYPEILRSKMSNTVLTLLKLGVEDLVHFDFMDPPAPETLMRALELLNYLGALDDEGSLTDLGNKMSELPLDPQLAKVLLASPDYGCSNEVLSIVAMLSVPQV 771
            CE+PGD+LLFLTGE EIED CR +R E   S +   +GE+ V+PLYSSLPP  QQ IF+ APGP+FPGGP GRKVVVSTN+AETSLTIDG+VYVVDPGFSKQKVYNPRIRVESLLVSPIS+ASA QRSGRAGRTRPGKCFRLYTE+SF +EL EQTYPEILRSKMSN VLTLLKLGVEDLVHFDFMDPPAPETLMRALELLNYLGALDD+G+LTDLGN+MSELPLDPQLAK++LASP++ CSNE+LSIVAM+SVP +
Sbjct:  274 CEEPGDILLFLTGEQEIEDTCRKLRDEAGNSDE--NEGEMVVFPLYSSLPPKQQQLIFQSAPGPRFPGGPPGRKVVVSTNIAETSLTIDGVVYVVDPGFSKQKVYNPRIRVESLLVSPISKASANQRSGRAGRTRPGKCFRLYTEKSFHQELQEQTYPEILRSKMSNVVLTLLKLGVEDLVHFDFMDPPAPETLMRALELLNYLGALDDDGNLTDLGNRMSELPLDPQLAKMILASPEFHCSNEMLSIVAMVSVPTI 528
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BLAST of mRNA_E-fasciculatus_F_contig13798.2798.1 vs. uniprot
Match: A0A7S2NYD2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NYD2_9STRA)

HSP 1 Score: 393 bits (1010), Expect = 7.590e-136
Identity = 198/257 (77.04%), Postives = 220/257 (85.60%), Query Frame = 1 
Query:    1 CEDPGDVLLFLTGEVEIEDACRAIRAEVEKSQDPTKDGELAVYPLYSSLPPAAQQKIFREAPGPKFPGGPVGRKVVVSTNVAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISRASAQQRSGRAGRTRPGKCFRLYTEQSFKEELLEQTYPEILRSKMSNTVLTLLKLGVEDLVHFDFMDPPAPETLMRALELLNYLGALDDEGSLTDLGNKMSELPLDPQLAKVLLASPDYGCSNEVLSIVAMLSVPQV 771
            CE PGD+L+FLTGE EIE  C+ IR +VE S+      EL VYPLYSSLPPA Q+KIF  APGPK  GG  GRKVVVSTN+AETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISRASA+QR+GRAGRT+PGKCFRLYTE SF+ +L E TYPEILRS + N VLTL KLG++DLVHFDFMDPPAPETLMRALELLNYLGALDDEG LTDLG KMS  PLDPQL+ +L+ SPDYGCSNEV++I A +SVPQ+
Sbjct:   11 CEGPGDILVFLTGEAEIETCCQEIRDQVE-SEATADTAELVVYPLYSSLPPAQQKKIFNPAPGPKVVGGKPGRKVVVSTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISRASAKQRAGRAGRTQPGKCFRLYTELSFRRDLQETTYPEILRSNLGNVVLTLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLGALDDEGELTDLGFKMSNFPLDPQLSMMLIVSPDYGCSNEVVTITACMSVPQI 266
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BLAST of mRNA_E-fasciculatus_F_contig13798.2798.1 vs. uniprot
Match: A0A7S3ZQN2_9STRA (RNA helicase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZQN2_9STRA)

HSP 1 Score: 405 bits (1041), Expect = 8.710e-135
Identity = 203/257 (78.99%), Postives = 228/257 (88.72%), Query Frame = 1 
Query:    1 CEDPGDVLLFLTGEVEIEDACRAIRAEVEKSQDPTKDGELAVYPLYSSLPPAAQQKIFREAPGPKFPGGPVGRKVVVSTNVAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISRASAQQRSGRAGRTRPGKCFRLYTEQSFKEELLEQTYPEILRSKMSNTVLTLLKLGVEDLVHFDFMDPPAPETLMRALELLNYLGALDDEGSLTDLGNKMSELPLDPQLAKVLLASPDYGCSNEVLSIVAMLSVPQV 771
            CE  GD+L+FLTGE+EIED C+ +R E +K     + GEL VYPLYSSLPP  Q++IF +APGP+  GG  GRKVVVSTN+AETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISRASA+QR+GRAGRTRPGKCFRLYTE SFK EL EQTYPEILRSKMSN VLTL KLG++DLVHFDFMDPPAPETLMRALELLNYLGALDD+G+LTDLG +M+ELPLDPQLAK+LLASP+Y CSNE LS+VA +SVPQ+
Sbjct:  267 CESAGDILVFLTGEIEIEDVCQRLRNEAQKCGP--ERGELVVYPLYSSLPPRQQKRIFDKAPGPRVAGGMPGRKVVVSTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISRASAKQRAGRAGRTRPGKCFRLYTEASFKSELQEQTYPEILRSKMSNVVLTLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLGALDDDGALTDLGRQMAELPLDPQLAKLLLASPEYKCSNEALSVVACMSVPQI 521
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BLAST of mRNA_E-fasciculatus_F_contig13798.2798.1 vs. uniprot
Match: A0A7S2YLB6_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YLB6_9STRA)

HSP 1 Score: 399 bits (1024), Expect = 1.890e-134
Identity = 204/258 (79.07%), Postives = 228/258 (88.37%), Query Frame = 1 
Query:    1 CEDPGDVLLFLTGEVEIEDACRAIRAEVEKSQDPTKD-GELAVYPLYSSLPPAAQQKIFREAPGPKFPGGPVGRKVVVSTNVAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISRASAQQRSGRAGRTRPGKCFRLYTEQSFKEELLEQTYPEILRSKMSNTVLTLLKLGVEDLVHFDFMDPPAPETLMRALELLNYLGALDDEGSLTDLGNKMSELPLDPQLAKVLLASPDYGCSNEVLSIVAMLSVPQV 771
            CE PGD+L+FLTGE EIE AC  IR   EK++   KD  +L VYPLYSSLPP AQ++IF  APGP+ PGGP GRKVV+STNVAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISRASA+QRSGRAGRTRPGKCFRLYTE+SF E+L E TYPEILRSKMS+ VLTL KLG++DLVHFDF+DPPAPETLMRALELLNYLGALDDEG LT++G +MSELPLDPQLAK++L S DYGCS+E+ SIVA LSVPQ+
Sbjct:   90 CEAPGDILVFLTGEQEIEQACDEIR---EKAEALGKDMPQLVVYPLYSSLPPQAQRRIFDAAPGPRVPGGPPGRKVVISTNVAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISRASARQRSGRAGRTRPGKCFRLYTEKSFHEDLQEATYPEILRSKMSSVVLTLKKLGIDDLVHFDFLDPPAPETLMRALELLNYLGALDDEGELTEIGYQMSELPLDPQLAKLILTSSDYGCSSEIASIVACLSVPQI 344
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BLAST of mRNA_E-fasciculatus_F_contig13798.2798.1 vs. uniprot
Match: A0A7S2HR77_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HR77_9STRA)

HSP 1 Score: 400 bits (1028), Expect = 1.920e-133
Identity = 202/257 (78.60%), Postives = 225/257 (87.55%), Query Frame = 1 
Query:    1 CEDPGDVLLFLTGEVEIEDACRAIRAEVEKSQDPTKDGELAVYPLYSSLPPAAQQKIFREAPGPKFPGGPVGRKVVVSTNVAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISRASAQQRSGRAGRTRPGKCFRLYTEQSFKEELLEQTYPEILRSKMSNTVLTLLKLGVEDLVHFDFMDPPAPETLMRALELLNYLGALDDEGSLTDLGNKMSELPLDPQLAKVLLASPDYGCSNEVLSIVAMLSVPQV 771
            CE+PGDVL+FLTGE EIED CR +R E E        G L VYPLYSSLPPA Q +IF  AP P  PGGP GRKVVVSTN+AETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPIS+ASAQQRSGRAGRTRPGKCFRLYTE+SF++EL EQTYPEILRSKMSN VLTL KLG++DLVHFDFMDPPAPETLMRALELLNYLGALDD+G LT LG KM+ELP+DPQ A++L +SP+Y CSNE++SIVA+L+VPQ+
Sbjct:  218 CEEPGDVLVFLTGEEEIEDVCRKLRTEQESFGPEV--GPLEVYPLYSSLPPAKQSEIFNPAPSPVTPGGPPGRKVVVSTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISQASAQQRSGRAGRTRPGKCFRLYTEKSFEQELQEQTYPEILRSKMSNVVLTLKKLGIDDLVHFDFMDPPAPETLMRALELLNYLGALDDDGELTPLGEKMAELPVDPQHARMLTSSPEYRCSNEMVSIVALLNVPQI 472
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BLAST of mRNA_E-fasciculatus_F_contig13798.2798.1 vs. uniprot
Match: B8CBV2_THAPS (RNA helicase n=2 Tax=Thalassiosirales TaxID=33847 RepID=B8CBV2_THAPS)

HSP 1 Score: 400 bits (1029), Expect = 6.190e-133
Identity = 203/258 (78.68%), Postives = 225/258 (87.21%), Query Frame = 1 
Query:    1 CEDPGDVLLFLTGEVEIEDACRAIRAEVEKSQDPTKDG-ELAVYPLYSSLPPAAQQKIFREAPGPKFPGGPVGRKVVVSTNVAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISRASAQQRSGRAGRTRPGKCFRLYTEQSFKEELLEQTYPEILRSKMSNTVLTLLKLGVEDLVHFDFMDPPAPETLMRALELLNYLGALDDEGSLTDLGNKMSELPLDPQLAKVLLASPDYGCSNEVLSIVAMLSVPQV 771
            CE PGD+L+FLTGE EIE AC  IR     + D  KD  EL VYPLYSSLPPA Q+KIF  APGP+  GGP GRKVVVSTN+AETSLTIDGIVYV+DPGFSKQKVYNPRIRVESLLVSPISRASA+QRSGRAGRTRPGKCFRLYTEQSF  +L E TYPEILRSKMSN VLTL KLG++DLVHFDFMDPPAPETLMRALE+LNYLGALDDEG LTDLG +M+ELPLDPQL+K+L++SPDY CS E++SIVA +SVPQ+
Sbjct:  268 CEGPGDILVFLTGEQEIEQACEEIRGG---AMDMGKDAPELVVYPLYSSLPPAQQRKIFSAAPGPRVVGGPPGRKVVVSTNIAETSLTIDGIVYVIDPGFSKQKVYNPRIRVESLLVSPISRASARQRSGRAGRTRPGKCFRLYTEQSFHNDLQETTYPEILRSKMSNVVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGDLTDLGRQMAELPLDPQLSKMLISSPDYNCSEEIVSIVAAMSVPQI 522
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BLAST of mRNA_E-fasciculatus_F_contig13798.2798.1 vs. uniprot
Match: A0A7S3DUD6_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S3DUD6_9STRA)

HSP 1 Score: 399 bits (1024), Expect = 3.300e-132
Identity = 204/258 (79.07%), Postives = 228/258 (88.37%), Query Frame = 1 
Query:    1 CEDPGDVLLFLTGEVEIEDACRAIRAEVEKSQDPTKD-GELAVYPLYSSLPPAAQQKIFREAPGPKFPGGPVGRKVVVSTNVAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISRASAQQRSGRAGRTRPGKCFRLYTEQSFKEELLEQTYPEILRSKMSNTVLTLLKLGVEDLVHFDFMDPPAPETLMRALELLNYLGALDDEGSLTDLGNKMSELPLDPQLAKVLLASPDYGCSNEVLSIVAMLSVPQV 771
            CE PGD+L+FLTGE EIE AC  IR   EK++   KD  +L VYPLYSSLPP AQ++IF  APGP+ PGGP GRKVV+STNVAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISRASA+QRSGRAGRTRPGKCFRLYTE+SF E+L E TYPEILRSKMS+ VLTL KLG++DLVHFDF+DPPAPETLMRALELLNYLGALDDEG LT++G +MSELPLDPQLAK++L S DYGCS+E+ SIVA LSVPQ+
Sbjct:  266 CEAPGDILVFLTGEQEIEQACDEIR---EKAEALGKDMPQLVVYPLYSSLPPQAQRRIFDAAPGPRVPGGPPGRKVVISTNVAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISRASARQRSGRAGRTRPGKCFRLYTEKSFHEDLQEATYPEILRSKMSSVVLTLKKLGIDDLVHFDFLDPPAPETLMRALELLNYLGALDDEGELTEIGYQMSELPLDPQLAKLILTSSDYGCSSEIASIVACLSVPQI 520
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13798.2798.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G1I0_ECTSI1.050e-17299.61RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5L043_9PHAE2.560e-15773.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CBU4_9STRA1.320e-14483.66RNA helicase n=1 Tax=Tribonema minus TaxID=303371 ... [more]
A0A7S2UZ15_9STRA8.300e-14281.71RNA helicase n=1 Tax=Fibrocapsa japonica TaxID=946... [more]
A0A7S2NYD2_9STRA7.590e-13677.04Hypothetical protein (Fragment) n=1 Tax=Leptocylin... [more]
A0A7S3ZQN2_9STRA8.710e-13578.99RNA helicase n=1 Tax=Pelagomonas calceolata TaxID=... [more]
A0A7S2YLB6_9STRA1.890e-13479.07Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S2HR77_9STRA1.920e-13378.60Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
B8CBV2_THAPS6.190e-13378.68RNA helicase n=2 Tax=Thalassiosirales TaxID=33847 ... [more]
A0A7S3DUD6_9STRA3.300e-13279.07Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13798contigE-fasciculatus_F_contig13798:477..3025 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score500.0
Seed ortholog evalue6.7e-139
Seed eggNOG ortholog2880.D7G1I0
Preferred nameDHX15
KEGG koko:K04615,ko:K12820,ko:K14305
KEGG TC1.l.1,9.A.14.15.1
KEGG Pathwayko03013,ko03040,ko04024,ko04080,ko04727,ko04742,ko04915,ko05032,map03013,map03040,map04024,map04080,map04727,map04742,map04915,map05032
KEGG ModuleM00427
GOsGO:0000166,GO:0000375,GO:0000377,GO:0000390,GO:0000398,GO:0000460,GO:0000462,GO:0000463,GO:0000466,GO:0000470,GO:0001932,GO:0001934,GO:0003674,GO:0003676,GO:0003723,GO:0003724,GO:0003725,GO:0003729,GO:0003824,GO:0004004,GO:0004386,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005689,GO:0005730,GO:0005737,GO:0005739,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008026,GO:0008144,GO:0008150,GO:0008152,GO:0008186,GO:0008380,GO:0009507,GO:0009526,GO:0009536,GO:0009893,GO:0009941,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016462,GO:0016604,GO:0016607,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019220,GO:0019222,GO:0022411,GO:0022613,GO:0023051,GO:0023056,GO:0030490,GO:0030554,GO:0030684,GO:0030686,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032270,GO:0032553,GO:0032555,GO:0032559,GO:0032872,GO:0032874,GO:0032984,GO:0032988,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0035639,GO:0036094,GO:0042254,GO:0042273,GO:0042274,GO:0042325,GO:0042327,GO:0042623,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043408,GO:0043410,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0045937,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051174,GO:0051246,GO:0051247,GO:0060255,GO:0065007,GO:0070013,GO:0070035,GO:0070302,GO:0070304,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0097159,GO:0097367,GO:0140098,GO:1900744,GO:1900745,GO:1901265,GO:1901360,GO:1901363,GO:1902531,GO:1902533,GO:1990904
EggNOG free text desc.helicase activity
EggNOG OGsCOG1643@1,KOG0925@2759
Ec32 ortholog descriptionRNA helicase family protein
Ec32 orthologEc-07_001080.1
EC3.6.4.13
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03019,ko03036,ko03041,ko04030
Hectar predicted targeting categoryother localisation
Exons5
Model size771
Cds size771
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13798.2798.1prot_E-fasciculatus_F_contig13798.2798.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13798 477..3025 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927873.9236119-CDS-E-fasciculatus_F_contig13798:476..5841622927873.9236119-CDS-E-fasciculatus_F_contig13798:476..584Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13798 477..584 +
1695995732.196358-CDS-E-fasciculatus_F_contig13798:476..5841695995732.196358-CDS-E-fasciculatus_F_contig13798:476..584Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13798 477..584 +
1622927873.9385521-CDS-E-fasciculatus_F_contig13798:1072..12731622927873.9385521-CDS-E-fasciculatus_F_contig13798:1072..1273Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13798 1073..1273 +
1695995732.2109501-CDS-E-fasciculatus_F_contig13798:1072..12731695995732.2109501-CDS-E-fasciculatus_F_contig13798:1072..1273Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13798 1073..1273 +
1622927873.951161-CDS-E-fasciculatus_F_contig13798:1916..21111622927873.951161-CDS-E-fasciculatus_F_contig13798:1916..2111Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13798 1917..2111 +
1695995732.2221487-CDS-E-fasciculatus_F_contig13798:1916..21111695995732.2221487-CDS-E-fasciculatus_F_contig13798:1916..2111Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13798 1917..2111 +
1622927873.969044-CDS-E-fasciculatus_F_contig13798:2382..25201622927873.969044-CDS-E-fasciculatus_F_contig13798:2382..2520Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13798 2383..2520 +
1695995732.2311413-CDS-E-fasciculatus_F_contig13798:2382..25201695995732.2311413-CDS-E-fasciculatus_F_contig13798:2382..2520Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13798 2383..2520 +
1622927873.9812772-CDS-E-fasciculatus_F_contig13798:2896..30251622927873.9812772-CDS-E-fasciculatus_F_contig13798:2896..3025Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13798 2897..3025 +
1695995732.2409518-CDS-E-fasciculatus_F_contig13798:2896..30251695995732.2409518-CDS-E-fasciculatus_F_contig13798:2896..3025Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13798 2897..3025 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13798.2798.1

>prot_E-fasciculatus_F_contig13798.2798.1 ID=prot_E-fasciculatus_F_contig13798.2798.1|Name=mRNA_E-fasciculatus_F_contig13798.2798.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=257bp
CEDPGDVLLFLTGEVEIEDACRAIRAEVEKSQDPTKDGELAVYPLYSSLP
PAAQQKIFREAPGPKFPGGPVGRKVVVSTNVAETSLTIDGIVYVVDPGFS
KQKVYNPRIRVESLLVSPISRASAQQRSGRAGRTRPGKCFRLYTEQSFKE
ELLEQTYPEILRSKMSNTVLTLLKLGVEDLVHFDFMDPPAPETLMRALEL
LNYLGALDDEGSLTDLGNKMSELPLDPQLAKVLLASPDYGCSNEVLSIVA
MLSVPQV
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mRNA from alignment at E-fasciculatus_F_contig13798:477..3025+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13798.2798.1 ID=mRNA_E-fasciculatus_F_contig13798.2798.1|Name=mRNA_E-fasciculatus_F_contig13798.2798.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2549bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13798:477..3025+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGTGAGGATCCTGGAGACGTGCTGCTGTTCTTGACCGGTGAAGTTGAGAT
TGAGGATGCTTGCCGGGCCATCAGGGCGGAGGTGGAAAAGTCGCAGGATC
CCACCAAGGTATGGATGCCCTCCACGACACCTATTGTAGTTCAATGCATA
GCTTCAACTTTAGGTCTTTTGTTGTCAGAATGATCCAGAGAATCGAGCAT
CAGTGCTGCCGTGCAAGTCCATCGCCGCCTGTACCGGGGTGTACTCGGGT
CTGTTAATAGCATATTTACAGTTTTGATATCGTCGGGTGAAGACGGCGGA
GGGGGTGATGAGGCGATGAAAAAACGATCAGATGCCATGCCGCACCCGTC
GTGTGCATAGTGGCCCTGTATCCCAAGCGCACGGAAGTGACATGTACAGC
CCAGATTTCATGCGAAAACAGCTCGGCCTCGATTGGATATTAAATTTGGG
GCACGTCGCCAGGTGGTACCCCTCTCCAACCTACAGGCGCAAAAACGGAA
TCTCCATGGACGCTTCATTGACCCCACCCGATACCACCCTGTTCCCTACT
ACTTACAACTGTTGCTCTTGTGTCCCCCCGGTATCCCGGGAGGCAGGACG
GGGAGCTAGCGGTGTACCCCCTCTACTCGTCTCTGCCGCCGGCGGCCCAG
CAGAAGATTTTCCGAGAGGCGCCGGGCCCCAAGTTCCCGGGGGGCCCCGT
GGGGAGAAAGGTGGTGGTGTCGACCAACGTGGCCGAGACGTCGCTGACCA
TCGACGGCATCGTCTACGTGGTGGACCCTGGGTTTTCCAAGCAGAAGGTA
GGGTGTTTTTGCTCGAGGGAGGGGTTGTCTTGGACTGCTATCCTGGTGAG
TTGACCCAGCTTGCTCCGATGGCACATGTGGATCCACGGAGAAGTTGACA
CAGCGGTTATCTTTGTCAGGCCCGAAATAGGCTCCTTGTTTCCTTTCGTG
GCACGCCCAGGGTGGCGAAGAGTGTGCTTGCGCGACAGCGGTACAGCCCT
GGTTATCCCCCCCAAATCCCTCTCAACACCCCCCGAAACAACGCGAGTTG
GGACCGAGTTTATCCACTTGCATGCGCACTCCCGGGCTTTGGATGCTGGC
AACAATGATGTGAAATGTGAAATACCTGTTTCAGCGGCAATGTGCGCTCC
TTTAGCTTTGTCATTTGTTGTGTGATGCATTTTTCATGATGGGCTGCACG
GCAAACTGAGATGGCCTTTTATATCCACCTGTCGGTTTTTTCATCCCGCA
TGGCTTGTATATCCACGACCATTCTGACGCTTGAAAATCAATCTACGATG
TACGTGCACCCGCACCCGTTTTTCTCCTTTTTGGCTCGATTCCCCCTCCG
TCTATCAGGTTAGACTCGTGTCCACAGACCCATGCGTTATCCTTCCGCAA
AACACCGACCAATGCCTCGTTCTTTTTTTTTTTTTTTCAGGTGTACAACC
CCCGCATCCGGGTAGAATCTCTGCTGGTCAGCCCCATCTCGAGGGCAAGC
GCACAGCAGCGTAGCGGTCGTGCGGGTCGAACCCGTCCCGGCAAGTGCTT
CCGGCTCTACACGGAGCAGTCGTTCAAGGAGGAGCTGCTGGAGCAGACGT
ATCCGGAGATCCTCCGGTCTAAGATGAGCAACACGGTACGAGGAGCCACG
TCATCTCTTTGTGTTTTGTCATTTCTTGCGCATTTCTCTCTCTTTTTTTT
GTTTGTTTGTATTTGTTTTCATCCGCTGTACACCCAACACATTTTTTTTT
TTACTTGATTCGCTTGTTGACGCGGTTCTCTTGTCTTGCGTGGTGGCATT
CTCGCCTTTTTCTTTTGTCGGCACTCTTTGCTTGAATTTCAATACGCTCT
GCGCTGACCAATTCGATTTTTTTTGCTTGTCTTGTCGCCCGGTCCCTATG
CGCTAGGTGTTGACCTTGCTCAAGCTCGGGGTGGAAGACTTGGTCCACTT
TGACTTTATGGACCCCCCGGCCCCCGAGACGCTGATGCGAGCACTGGAAC
TCCTCAACTACCTCGGTGCTCTCGACGACGAGGGCTCGCTAACGGTGAGA
GAAACGAAAGAGGGTGGGGAGTTGGGACTGTGGCACAATCCGCCTCTCGA
GTTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGCACGGGTTTCGCATGTCAAGACGCTGGCCCCCGGACTGTTC
TCATCGTATCTTGGGGGTGGAATCCACGTGTTGTCAAAAGCATTATAATT
AATCACACAGAATGTGACTTGTTATTTAGTAACAAGTCGCACAACGATAT
GACGTAAGCGTTAACAATCTCACACAACGAAATGACGTGTTCTCAAAGCA
CAAAAACACACACACAATATTATCATGATACGTCATGTCGTGGATATTGT
CGCTTTTTTTCTCGTTTCAGGACCTCGGCAACAAGATGAGCGAGCTCCCG
CTAGACCCCCAGCTGGCCAAGGTGCTTCTGGCATCCCCGGACTACGGGTG
CTCGAACGAGGTCCTGTCGATCGTAGCGATGCTCTCCGTGCCACAGGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13798:477..3025+

>mRNA_E-fasciculatus_F_contig13798.2798.1 ID=mRNA_E-fasciculatus_F_contig13798.2798.1|Name=mRNA_E-fasciculatus_F_contig13798.2798.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1542bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13798:477..3025+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGTGAGGATCCTGGAGACGTGCTGCTGTTCTTGACCGGTGAAGTTGAGAT
TGAGGATGCTTGCCGGGCCATCAGGGCGGAGGTGGAAAAGTCGCAGGATC
CCACCAAGTGTGAGGATCCTGGAGACGTGCTGCTGTTCTTGACCGGTGAA
GTTGAGATTGAGGATGCTTGCCGGGCCATCAGGGCGGAGGTGGAAAAGTC
GCAGGATCCCACCAAGGACGGGGAGCTAGCGGTGTACCCCCTCTACTCGT
CTCTGCCGCCGGCGGCCCAGCAGAAGATTTTCCGAGAGGCGCCGGGCCCC
AAGTTCCCGGGGGGCCCCGTGGGGAGAAAGGTGGTGGTGTCGACCAACGT
GGCCGAGACGTCGCTGACCATCGACGGCATCGTCTACGTGGTGGACCCTG
GGTTTTCCAAGCAGAAGGACGGGGAGCTAGCGGTGTACCCCCTCTACTCG
TCTCTGCCGCCGGCGGCCCAGCAGAAGATTTTCCGAGAGGCGCCGGGCCC
CAAGTTCCCGGGGGGCCCCGTGGGGAGAAAGGTGGTGGTGTCGACCAACG
TGGCCGAGACGTCGCTGACCATCGACGGCATCGTCTACGTGGTGGACCCT
GGGTTTTCCAAGCAGAAGGTGTACAACCCCCGCATCCGGGTAGAATCTCT
GCTGGTCAGCCCCATCTCGAGGGCAAGCGCACAGCAGCGTAGCGGTCGTG
CGGGTCGAACCCGTCCCGGCAAGTGCTTCCGGCTCTACACGGAGCAGTCG
TTCAAGGAGGAGCTGCTGGAGCAGACGTATCCGGAGATCCTCCGGTCTAA
GATGAGCAACACGGTGTACAACCCCCGCATCCGGGTAGAATCTCTGCTGG
TCAGCCCCATCTCGAGGGCAAGCGCACAGCAGCGTAGCGGTCGTGCGGGT
CGAACCCGTCCCGGCAAGTGCTTCCGGCTCTACACGGAGCAGTCGTTCAA
GGAGGAGCTGCTGGAGCAGACGTATCCGGAGATCCTCCGGTCTAAGATGA
GCAACACGGTGTTGACCTTGCTCAAGCTCGGGGTGGAAGACTTGGTCCAC
TTTGACTTTATGGACCCCCCGGCCCCCGAGACGCTGATGCGAGCACTGGA
ACTCCTCAACTACCTCGGTGCTCTCGACGACGAGGGCTCGCTAACGGTGT
TGACCTTGCTCAAGCTCGGGGTGGAAGACTTGGTCCACTTTGACTTTATG
GACCCCCCGGCCCCCGAGACGCTGATGCGAGCACTGGAACTCCTCAACTA
CCTCGGTGCTCTCGACGACGAGGGCTCGCTAACGGACCTCGGCAACAAGA
TGAGCGAGCTCCCGCTAGACCCCCAGCTGGCCAAGGTGCTTCTGGCATCC
CCGGACTACGGGTGCTCGAACGAGGTCCTGTCGATCGTAGCGATGCTCTC
CGTGCCACAGGTGGACCTCGGCAACAAGATGAGCGAGCTCCCGCTAGACC
CCCAGCTGGCCAAGGTGCTTCTGGCATCCCCGGACTACGGGTGCTCGAAC
GAGGTCCTGTCGATCGTAGCGATGCTCTCCGTGCCACAGGTG
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