mRNA_E-fasciculatus_F_contig13796.2797.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13796.2797.1
Unique NamemRNA_E-fasciculatus_F_contig13796.2797.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13796.2797.1 vs. uniprot
Match: A0A6H5L5C8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5C8_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 1.610e-35
Identity = 68/91 (74.73%), Postives = 73/91 (80.22%), Query Frame = 3 
Query:    3 CGCNPDTTLCNRCRCKDRNCSLACGCRGRCTQRRAAPAPVRAGGRSESRPTVGARQTGPTEGADRPQPPVETRPPLSGSVANAVALFMASM 275
            CGCNPDT LCNRCRCK++ CSLACGC  RCT RRAAPAPVRAGGRS S PTVGA QT   EG  RPQPP+E+RP  S S ANA+ALF ASM
Sbjct:  170 CGCNPDTALCNRCRCKNKKCSLACGCSNRCTLRRAAPAPVRAGGRSASPPTVGASQTRRVEGTSRPQPPIESRPRPSYSAANAMALFAASM 260
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BLAST of mRNA_E-fasciculatus_F_contig13796.2797.1 vs. uniprot
Match: A0A6H5K0U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0U7_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 6.440e-34
Identity = 68/91 (74.73%), Postives = 72/91 (79.12%), Query Frame = 3 
Query:    3 CGCNPDTTLCNRCRCKDRNCSLACGCRGRCTQRRAAPAPVRAGGRSESRPTVGARQTGPTEGADRPQPPVETRPPLSGSVANAVALFMASM 275
            CGCNP+  LCNRCRCKDR CSLACGCRG CT R A PAPVRAGG S SRPTV A QTGP EG  RPQPP++TRP  SG  ANA+ALF ASM
Sbjct:  388 CGCNPEMYLCNRCRCKDRKCSLACGCRGLCTLRWAVPAPVRAGGMSASRPTVDASQTGPIEGVARPQPPIDTRPQPSGLDANAMALFAASM 478
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BLAST of mRNA_E-fasciculatus_F_contig13796.2797.1 vs. uniprot
Match: A0A6H5JR25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR25_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 1.590e-33
Identity = 68/91 (74.73%), Postives = 73/91 (80.22%), Query Frame = 3 
Query:    3 CGCNPDTTLCNRCRCKDRNCSLACGCRGRCTQRRAAPAPVRAGGRSESRPTVGARQTGPTEGADRPQPPVETRPPLSGSVANAVALFMASM 275
            CG NPDT LC RCRCK++ CSLACGCR RCT RRAA APVRAGGRS SRPTVGA QT   EG  RPQPP+E+RP  S SVANA+ALF ASM
Sbjct:  346 CGFNPDTALCTRCRCKNKKCSLACGCRNRCTLRRAAAAPVRAGGRSASRPTVGASQTRRVEGTSRPQPPIESRPQPSDSVANAMALFAASM 436
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BLAST of mRNA_E-fasciculatus_F_contig13796.2797.1 vs. uniprot
Match: A0A6H5KTG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTG2_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 1.600e-33
Identity = 68/91 (74.73%), Postives = 73/91 (80.22%), Query Frame = 3 
Query:    3 CGCNPDTTLCNRCRCKDRNCSLACGCRGRCTQRRAAPAPVRAGGRSESRPTVGARQTGPTEGADRPQPPVETRPPLSGSVANAVALFMASM 275
            CGCNPDT LCNRCRCK++ CSLACGCR RCT RR APAPVRA GRS SRPTVGA QT   EG  RPQP +E+RP  S SVANA+ALF ASM
Sbjct:  858 CGCNPDTALCNRCRCKNKKCSLACGCRNRCTLRRVAPAPVRAAGRSASRPTVGAPQTSRVEGTPRPQPHIESRPRPSYSVANAMALFAASM 948
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13796.2797.1 vs. uniprot
Match: A0A6H5L6D9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D9_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 1.620e-33
Identity = 68/91 (74.73%), Postives = 73/91 (80.22%), Query Frame = 3 
Query:    3 CGCNPDTTLCNRCRCKDRNCSLACGCRGRCTQRRAAPAPVRAGGRSESRPTVGARQTGPTEGADRPQPPVETRPPLSGSVANAVALFMASM 275
            CGCNPDT LCNRCRCK++ CSLACGCR RCT RR APAPVRA GRS SRPTVGA QT   EG  RPQP +E+RP  S SVANA+ALF ASM
Sbjct: 1877 CGCNPDTALCNRCRCKNKKCSLACGCRNRCTLRRVAPAPVRAAGRSASRPTVGAPQTSRVEGTPRPQPHIESRPRPSYSVANAMALFAASM 1967
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BLAST of mRNA_E-fasciculatus_F_contig13796.2797.1 vs. uniprot
Match: A0A6H5JLL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLL0_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 1.030e-32
Identity = 67/90 (74.44%), Postives = 73/90 (81.11%), Query Frame = 3 
Query:    6 GCNPDTTLCNRCRCKDRNCSLACGCRGRCTQRRAAPAPVRAGGRSESRPTVGARQTGPTEGADRPQPPVETRPPLSGSVANAVALFMASM 275
            GCNPDT LCNRCRCKDR CSLAC CR RCT RRAA APVRAGGRS  RPTVGA QTGP +   RPQPP++TRP  S  VANA+ALF+AS+
Sbjct:  254 GCNPDTALCNRCRCKDRKCSLACRCRSRCTLRRAASAPVRAGGRSAFRPTVGASQTGPIDCVARPQPPIDTRPQPSLRVANAMALFIASI 343
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BLAST of mRNA_E-fasciculatus_F_contig13796.2797.1 vs. uniprot
Match: A0A6H5JJH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJH5_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 6.620e-30
Identity = 67/95 (70.53%), Postives = 72/95 (75.79%), Query Frame = 3 
Query:    3 CGCNPDTTLCNRCRCKDRNCSLACGCRGRCTQRRAAPAPVRAGGRSESRPTVGARQTGPTEG----ADRPQPPVETRPPLSGSVANAVALFMASM 275
            CGCNPDT LCNRCRCKDR CSLACG   RCT RRAAPA VRAGGRS SRPTVG  QTGP EG      RPQ P++TRP  S  VAN++AL +ASM
Sbjct:  485 CGCNPDTALCNRCRCKDRKCSLACGRISRCTLRRAAPAHVRAGGRSASRPTVGTFQTGPIEGPIEGVARPQLPIDTRPQPSLRVANSIALLVASM 579
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13796.2797.1 vs. uniprot
Match: A0A6H5KZT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZT5_9PHAE)

HSP 1 Score: 107 bits (268), Expect = 1.270e-25
Identity = 58/77 (75.32%), Postives = 61/77 (79.22%), Query Frame = 3 
Query:   45 CKDRNCSLACGCRGRCTQRRAAPAPVRAGGRSESRPTVGARQTGPTEGADRPQPPVETRPPLSGSVANAVALFMASM 275
            CKDR CSLACGCRG CT RRAAPAPVRAGG S SRPTVGA QTGP EG  R QPPV+TRP  S  V+NA+ LF ASM
Sbjct:  275 CKDRKCSLACGCRGHCTLRRAAPAPVRAGGMSASRPTVGASQTGPIEGVARHQPPVDTRPQPSVLVSNAMTLFAASM 351
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13796.2797.1 vs. uniprot
Match: A0A6H5JT11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT11_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 2.920e-18
Identity = 52/91 (57.14%), Postives = 55/91 (60.44%), Query Frame = 3 
Query:    3 CGCNPDTTLCNRCRCKDRNCSLACGCRGRCTQRRAAPAPVRAGGRSESRPTVGARQTGPTEGADRPQPPVETRPPLSGSVANAVALFMASM 275
            CGCNP+TTLCNRCR KDR CSL    RGRCT                         TG  EGA RPQPP+ETRP LS SVANA+ALFMASM
Sbjct:  880 CGCNPETTLCNRCRWKDRKCSLXXXXRGRCTL------------------------TGSIEGAARPQPPIETRPWLSESVANAMALFMASM 946
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13796.2797.1 vs. uniprot
Match: A0A6H5JK56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK56_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 6.050e-16
Identity = 38/52 (73.08%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:   58 TARSLAAAEVAAPNVGRRRHRCEQGGGLNPGLRWVLVKLGRPRVPTDPNHPS 213
            +ARSL AAE  AP VGRRRH CE+GGGL P LRW+L+KLGR RV  DPNHPS
Sbjct:  903 SARSLVAAEAVAPYVGRRRHPCEEGGGLRPSLRWLLLKLGRSRVSPDPNHPS 954
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13796.2797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5L5C8_9PHAE1.610e-3574.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0U7_9PHAE6.440e-3474.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR25_9PHAE1.590e-3374.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTG2_9PHAE1.600e-3374.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6D9_9PHAE1.620e-3374.73Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLL0_9PHAE1.030e-3274.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJH5_9PHAE6.620e-3070.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZT5_9PHAE1.270e-2575.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT11_9PHAE2.920e-1857.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JK56_9PHAE6.050e-1673.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13796contigE-fasciculatus_F_contig13796:2386..2661 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size276
Cds size276
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927873.6495147-CDS-E-fasciculatus_F_contig13796:2385..26611622927873.6495147-CDS-E-fasciculatus_F_contig13796:2385..2661Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13796 2386..2661 +
1695995732.185253-CDS-E-fasciculatus_F_contig13796:2385..26611695995732.185253-CDS-E-fasciculatus_F_contig13796:2385..2661Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13796 2386..2661 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13796.2797.1prot_E-fasciculatus_F_contig13796.2797.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13796 2386..2661 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13796.2797.1

>prot_E-fasciculatus_F_contig13796.2797.1 ID=prot_E-fasciculatus_F_contig13796.2797.1|Name=mRNA_E-fasciculatus_F_contig13796.2797.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=92bp
RAVAIRTRPCATGAGARTGTARSLAAAEVAAPNVGRRRHRCEQGGGLNPG
LRWVLVKLGRPRVPTDPNHPSRLDHRYPGVLPMPWHSLWPL*
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mRNA from alignment at E-fasciculatus_F_contig13796:2386..2661+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13796.2797.1 ID=mRNA_E-fasciculatus_F_contig13796.2797.1|Name=mRNA_E-fasciculatus_F_contig13796.2797.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=276bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13796:2386..2661+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGTGCGGTTGCAATCCGGACACGACCCTGTGCAACAGGTGCAGGTGCAAG
GACAGGAACTGCTCGCTCGCTTGCGGCTGCAGAGGTCGCTGCACCCAACG
TCGGGCGGCGCCGGCACCGGTGCGAGCAGGGGGGAGGTCTGAATCCCGGC
CTACGGTGGGTGCTCGTCAAACTGGGCCGACCGAGGGTGCCGACCGACCC
CAACCACCCGTCGAGACTCGACCACCGCTATCCGGGAGTGTTGCCAATGC
CGTGGCACTCTTTATGGCCTCTATGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13796:2386..2661+

>mRNA_E-fasciculatus_F_contig13796.2797.1 ID=mRNA_E-fasciculatus_F_contig13796.2797.1|Name=mRNA_E-fasciculatus_F_contig13796.2797.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=552bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13796:2386..2661+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGTGCGGTTGCAATCCGGACACGACCCTGTGCAACAGGTGCAGGTGCAAG
GACAGGAACTGCTCGCTCGCTTGCGGCTGCAGAGGTCGCTGCACCCAACG
TCGGGCGGCGCCGGCACCGGTGCGAGCAGGGGGGAGGTCTGAATCCCGGC
CTACGGTGGGTGCTCGTCAAACTGGGCCGACCGAGGGTGCCGACCGACCC
CAACCACCCGTCGAGACTCGACCACCGCTATCCGGGAGTGTTGCCAATGC
CGTGGCACTCTTTATGGCCTCTATGACGTGCGGTTGCAATCCGGACACGA
CCCTGTGCAACAGGTGCAGGTGCAAGGACAGGAACTGCTCGCTCGCTTGC
GGCTGCAGAGGTCGCTGCACCCAACGTCGGGCGGCGCCGGCACCGGTGCG
AGCAGGGGGGAGGTCTGAATCCCGGCCTACGGTGGGTGCTCGTCAAACTG
GGCCGACCGAGGGTGCCGACCGACCCCAACCACCCGTCGAGACTCGACCA
CCGCTATCCGGGAGTGTTGCCAATGCCGTGGCACTCTTTATGGCCTCTAT
GA
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