mRNA_E-fasciculatus_F_contig13796.2796.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13796.2796.1
Unique NamemRNA_E-fasciculatus_F_contig13796.2796.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13796.2796.1 vs. uniprot
Match: A0A6H5L5C8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5C8_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 1.140e-35
Identity = 66/91 (72.53%), Postives = 74/91 (81.32%), Query Frame = 3 
Query:    3 CGCNPETTLCNRCRCKDRNCSLACGCRGRCTQLRAAPAPVRAGGRSESRPTVGARQTEPIEGAARPQPPVETRPPLSGSVANAVALFMASM 275
            CGCNP+T LCNRCRCK++ CSLACGC  RCT  RAAPAPVRAGGRS S PTVGA QT  +EG +RPQPP+E+RP  S S ANA+ALF ASM
Sbjct:  170 CGCNPDTALCNRCRCKNKKCSLACGCSNRCTLRRAAPAPVRAGGRSASPPTVGASQTRRVEGTSRPQPPIESRPRPSYSAANAMALFAASM 260
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BLAST of mRNA_E-fasciculatus_F_contig13796.2796.1 vs. uniprot
Match: A0A6H5K0U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0U7_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 1.280e-34
Identity = 69/91 (75.82%), Postives = 72/91 (79.12%), Query Frame = 3 
Query:    3 CGCNPETTLCNRCRCKDRNCSLACGCRGRCTQLRAAPAPVRAGGRSESRPTVGARQTEPIEGAARPQPPVETRPPLSGSVANAVALFMASM 275
            CGCNPE  LCNRCRCKDR CSLACGCRG CT   A PAPVRAGG S SRPTV A QT PIEG ARPQPP++TRP  SG  ANA+ALF ASM
Sbjct:  388 CGCNPEMYLCNRCRCKDRKCSLACGCRGLCTLRWAVPAPVRAGGMSASRPTVDASQTGPIEGVARPQPPIDTRPQPSGLDANAMALFAASM 478
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BLAST of mRNA_E-fasciculatus_F_contig13796.2796.1 vs. uniprot
Match: A0A6H5JR25_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR25_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 1.140e-33
Identity = 66/91 (72.53%), Postives = 74/91 (81.32%), Query Frame = 3 
Query:    3 CGCNPETTLCNRCRCKDRNCSLACGCRGRCTQLRAAPAPVRAGGRSESRPTVGARQTEPIEGAARPQPPVETRPPLSGSVANAVALFMASM 275
            CG NP+T LC RCRCK++ CSLACGCR RCT  RAA APVRAGGRS SRPTVGA QT  +EG +RPQPP+E+RP  S SVANA+ALF ASM
Sbjct:  346 CGFNPDTALCTRCRCKNKKCSLACGCRNRCTLRRAAAAPVRAGGRSASRPTVGASQTRRVEGTSRPQPPIESRPQPSDSVANAMALFAASM 436
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BLAST of mRNA_E-fasciculatus_F_contig13796.2796.1 vs. uniprot
Match: A0A6H5KTG2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTG2_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 2.980e-33
Identity = 66/91 (72.53%), Postives = 73/91 (80.22%), Query Frame = 3 
Query:    3 CGCNPETTLCNRCRCKDRNCSLACGCRGRCTQLRAAPAPVRAGGRSESRPTVGARQTEPIEGAARPQPPVETRPPLSGSVANAVALFMASM 275
            CGCNP+T LCNRCRCK++ CSLACGCR RCT  R APAPVRA GRS SRPTVGA QT  +EG  RPQP +E+RP  S SVANA+ALF ASM
Sbjct:  858 CGCNPDTALCNRCRCKNKKCSLACGCRNRCTLRRVAPAPVRAAGRSASRPTVGAPQTSRVEGTPRPQPHIESRPRPSYSVANAMALFAASM 948
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13796.2796.1 vs. uniprot
Match: A0A6H5L6D9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D9_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 3.030e-33
Identity = 66/91 (72.53%), Postives = 73/91 (80.22%), Query Frame = 3 
Query:    3 CGCNPETTLCNRCRCKDRNCSLACGCRGRCTQLRAAPAPVRAGGRSESRPTVGARQTEPIEGAARPQPPVETRPPLSGSVANAVALFMASM 275
            CGCNP+T LCNRCRCK++ CSLACGCR RCT  R APAPVRA GRS SRPTVGA QT  +EG  RPQP +E+RP  S SVANA+ALF ASM
Sbjct: 1877 CGCNPDTALCNRCRCKNKKCSLACGCRNRCTLRRVAPAPVRAAGRSASRPTVGAPQTSRVEGTPRPQPHIESRPRPSYSVANAMALFAASM 1967
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BLAST of mRNA_E-fasciculatus_F_contig13796.2796.1 vs. uniprot
Match: A0A6H5JLL0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLL0_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 1.910e-32
Identity = 66/90 (73.33%), Postives = 73/90 (81.11%), Query Frame = 3 
Query:    6 GCNPETTLCNRCRCKDRNCSLACGCRGRCTQLRAAPAPVRAGGRSESRPTVGARQTEPIEGAARPQPPVETRPPLSGSVANAVALFMASM 275
            GCNP+T LCNRCRCKDR CSLAC CR RCT  RAA APVRAGGRS  RPTVGA QT PI+  ARPQPP++TRP  S  VANA+ALF+AS+
Sbjct:  254 GCNPDTALCNRCRCKDRKCSLACRCRSRCTLRRAASAPVRAGGRSAFRPTVGASQTGPIDCVARPQPPIDTRPQPSLRVANAMALFIASI 343
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BLAST of mRNA_E-fasciculatus_F_contig13796.2796.1 vs. uniprot
Match: A0A6H5JJH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJH5_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 1.250e-29
Identity = 66/95 (69.47%), Postives = 72/95 (75.79%), Query Frame = 3 
Query:    3 CGCNPETTLCNRCRCKDRNCSLACGCRGRCTQLRAAPAPVRAGGRSESRPTVGARQTEPIEG----AARPQPPVETRPPLSGSVANAVALFMASM 275
            CGCNP+T LCNRCRCKDR CSLACG   RCT  RAAPA VRAGGRS SRPTVG  QT PIEG     ARPQ P++TRP  S  VAN++AL +ASM
Sbjct:  485 CGCNPDTALCNRCRCKDRKCSLACGRISRCTLRRAAPAHVRAGGRSASRPTVGTFQTGPIEGPIEGVARPQLPIDTRPQPSLRVANSIALLVASM 579
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13796.2796.1 vs. uniprot
Match: A0A6H5KZT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZT5_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 1.760e-25
Identity = 58/77 (75.32%), Postives = 61/77 (79.22%), Query Frame = 3 
Query:   45 CKDRNCSLACGCRGRCTQLRAAPAPVRAGGRSESRPTVGARQTEPIEGAARPQPPVETRPPLSGSVANAVALFMASM 275
            CKDR CSLACGCRG CT  RAAPAPVRAGG S SRPTVGA QT PIEG AR QPPV+TRP  S  V+NA+ LF ASM
Sbjct:  275 CKDRKCSLACGCRGHCTLRRAAPAPVRAGGMSASRPTVGASQTGPIEGVARHQPPVDTRPQPSVLVSNAMTLFAASM 351
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13796.2796.1 vs. uniprot
Match: A0A6H5JT11_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT11_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.300e-19
Identity = 54/91 (59.34%), Postives = 56/91 (61.54%), Query Frame = 3 
Query:    3 CGCNPETTLCNRCRCKDRNCSLACGCRGRCTQLRAAPAPVRAGGRSESRPTVGARQTEPIEGAARPQPPVETRPPLSGSVANAVALFMASM 275
            CGCNPETTLCNRCR KDR CSL    RGRCT                         T  IEGAARPQPP+ETRP LS SVANA+ALFMASM
Sbjct:  880 CGCNPETTLCNRCRWKDRKCSLXXXXRGRCTL------------------------TGSIEGAARPQPPIETRPWLSESVANAMALFMASM 946
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13796.2796.1 vs. uniprot
Match: A0A6H5JK56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK56_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 2.690e-17
Identity = 38/51 (74.51%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:   61 ARSLAAAEVAAPNFGRRRHPCEQGGGLNPGLLWVLVKLSRSRVPPDPNHPS 213
            ARSL AAE  AP  GRRRHPCE+GGGL P L W+L+KL RSRV PDPNHPS
Sbjct:  904 ARSLVAAEAVAPYVGRRRHPCEEGGGLRPSLRWLLLKLGRSRVSPDPNHPS 954
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13796.2796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5L5C8_9PHAE1.140e-3572.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0U7_9PHAE1.280e-3475.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR25_9PHAE1.140e-3372.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTG2_9PHAE2.980e-3372.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6D9_9PHAE3.030e-3372.53Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLL0_9PHAE1.910e-3273.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJH5_9PHAE1.250e-2969.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KZT5_9PHAE1.760e-2575.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT11_9PHAE1.300e-1959.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JK56_9PHAE2.690e-1774.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13796contigE-fasciculatus_F_contig13796:1835..2110 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size276
Cds size276
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927872.2814255-CDS-E-fasciculatus_F_contig13796:1834..21101622927872.2814255-CDS-E-fasciculatus_F_contig13796:1834..2110Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13796 1835..2110 -
1695995732.1747518-CDS-E-fasciculatus_F_contig13796:1834..21101695995732.1747518-CDS-E-fasciculatus_F_contig13796:1834..2110Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13796 1835..2110 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13796.2796.1prot_E-fasciculatus_F_contig13796.2796.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13796 1835..2110 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13796.2796.1

>prot_E-fasciculatus_F_contig13796.2796.1 ID=prot_E-fasciculatus_F_contig13796.2796.1|Name=mRNA_E-fasciculatus_F_contig13796.2796.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=92bp
RAVAIRRRPCATGAGARTGIARSLAAAEVAAPNFGRRRHPCEQGGGLNPG
LLWVLVKLSRSRVPPDPNHPSRLDHRYPGVLPMPWHSLWPL*
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mRNA from alignment at E-fasciculatus_F_contig13796:1835..2110-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13796.2796.1 ID=mRNA_E-fasciculatus_F_contig13796.2796.1|Name=mRNA_E-fasciculatus_F_contig13796.2796.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=276bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13796:1835..2110- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGTGCGGTTGCAATCCGGAGACGACCCTGTGCAACAGGTGCAGGTGCAAG
GACAGGAATTGCTCGCTCGCTTGCGGCTGCAGAGGTCGCTGCACCCAACT
TCGGGCGGCGCCGGCACCCGTGCGAGCAGGGGGGAGGTCTGAATCCCGGC
CTACTGTGGGTGCTCGTCAAACTGAGCCGATCGAGGGTGCCGCCCGACCC
CAACCACCCGTCGAGACTCGACCACCGCTATCCGGGAGTGTTGCCAATGC
CGTGGCACTCTTTATGGCCTCTATGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13796:1835..2110-

>mRNA_E-fasciculatus_F_contig13796.2796.1 ID=mRNA_E-fasciculatus_F_contig13796.2796.1|Name=mRNA_E-fasciculatus_F_contig13796.2796.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=552bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13796:1835..2110- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGTGCGGTTGCAATCCGGAGACGACCCTGTGCAACAGGTGCAGGTGCAAG
GACAGGAATTGCTCGCTCGCTTGCGGCTGCAGAGGTCGCTGCACCCAACT
TCGGGCGGCGCCGGCACCCGTGCGAGCAGGGGGGAGGTCTGAATCCCGGC
CTACTGTGGGTGCTCGTCAAACTGAGCCGATCGAGGGTGCCGCCCGACCC
CAACCACCCGTCGAGACTCGACCACCGCTATCCGGGAGTGTTGCCAATGC
CGTGGCACTCTTTATGGCCTCTATGACGTGCGGTTGCAATCCGGAGACGA
CCCTGTGCAACAGGTGCAGGTGCAAGGACAGGAATTGCTCGCTCGCTTGC
GGCTGCAGAGGTCGCTGCACCCAACTTCGGGCGGCGCCGGCACCCGTGCG
AGCAGGGGGGAGGTCTGAATCCCGGCCTACTGTGGGTGCTCGTCAAACTG
AGCCGATCGAGGGTGCCGCCCGACCCCAACCACCCGTCGAGACTCGACCA
CCGCTATCCGGGAGTGTTGCCAATGCCGTGGCACTCTTTATGGCCTCTAT
GA
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