mRNA_E-fasciculatus_F_contig13795.2795.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13795.2795.1
Unique NamemRNA_E-fasciculatus_F_contig13795.2795.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13795.2795.1 vs. uniprot
Match: D7FKJ9_ECTSI (PIH1_CS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKJ9_ECTSI)

HSP 1 Score: 263 bits (673), Expect = 3.700e-85
Identity = 146/187 (78.07%), Postives = 150/187 (80.21%), Query Frame = 1 
Query:    4 TSQRAAGKEIKSKTNRPATSAGADDNGAAPRSXXXXXXXXXXXXXXXXXXXXXXXXXXXSTPVEQLSPGVRRGSGGTTYKLVESGAFEISDHTTDRVRQTPTPRTLVATVTLPADAEPTRKLDVVVALRRLTIGVLGDPEGSSPRYLDLPLPYDVEDDSKCSAARDKSGLLKITMPVKQPAAPPLTV 564
            TSQR AGKEIKSK NRP TSA ADDNGAA RS                           STP EQL+PG+RRGSGG TYKLVESGAFEISDHTTDRVRQTPTPRTLV TVTLPADA PTRKLDVVVA+RRLTIGVL DPEGSSPRYLDLPLPYDVED+SKCSAARDKSGLLKITMPVKQPAAPPLTV
Sbjct:   32 TSQRDAGKEIKSKANRPQTSAVADDNGAALRSAGAAAEPKKAGDGESPSPASAPAEKEQSTPAEQLAPGLRRGSGGATYKLVESGAFEISDHTTDRVRQTPTPRTLVVTVTLPADAGPTRKLDVVVAVRRLTIGVLSDPEGSSPRYLDLPLPYDVEDESKCSAARDKSGLLKITMPVKQPAAPPLTV 218
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BLAST of mRNA_E-fasciculatus_F_contig13795.2795.1 vs. uniprot
Match: A0A6H5JI76_9PHAE (PIH1_CS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI76_9PHAE)

HSP 1 Score: 249 bits (637), Expect = 3.230e-76
Identity = 152/223 (68.16%), Postives = 161/223 (72.20%), Query Frame = 1 
Query:    1 QTSQRAAGKEIKSKTNRPATSAGADDNGAAPRSXXXXXXXXXXXXXXXXXXXXXXXXXXXSTPVEQLSPGVRRGSGGTTYKLVESGAFEISDHTTDRVRQTPTPRTLVATVTLPADAEPTRKLDVVVALRRLTIGVLGDPEGSSPRYLDLPLPYDVEDDSKCSAARDKSGLLKITMPVKQPAAPPLTVXXXXXXXXXXXXXXXXXXXXXXXXXDGDGDSEEHE 669
            +T+Q+AAGK   +K NRP TSA AD N AAPRS             XXXXXX        STP EQL+PG++RG GGTTYKLVESGAFEISDHTTDRVRQTPTPRTLV TV LPADAE TRKLDVVVALR+LTIGVLGDPEGSSPRYLDLPLPYDVEDDSKCSA RDKSGLLKITMPVKQPAAPPLTV                         D DG SEEH+
Sbjct:    3 ETAQKAAGK---AKANRPRTSAVADVNVAAPRSAGAAAEPKKAGDGXXXXXXSAPAEKEQSTPAEQLAPGLKRGFGGTTYKLVESGAFEISDHTTDRVRQTPTPRTLVVTVILPADAESTRKLDVVVALRKLTIGVLGDPEGSSPRYLDLPLPYDVEDDSKCSAVRDKSGLLKITMPVKQPAAPPLTVPPPLPAAATARVCSDGGRGGAAAATDIDGVSEEHK 222
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13795.2795.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKJ9_ECTSI3.700e-8578.07PIH1_CS domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5JI76_9PHAE3.230e-7668.16PIH1_CS domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13795contigE-fasciculatus_F_contig13795:1794..3521 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionPIH1 family
Ec32 orthologEc-12_001800.1
Hectar predicted targeting categoryother localisation
Exons3
Model size678
Cds size678
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13795.2795.1prot_E-fasciculatus_F_contig13795.2795.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13795 1794..3521 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927872.205019-CDS-E-fasciculatus_F_contig13795:1793..20341622927872.205019-CDS-E-fasciculatus_F_contig13795:1793..2034Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13795 1794..2034 -
1695995732.1352127-CDS-E-fasciculatus_F_contig13795:1793..20341695995732.1352127-CDS-E-fasciculatus_F_contig13795:1793..2034Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13795 1794..2034 -
1622927872.222188-CDS-E-fasciculatus_F_contig13795:2635..27211622927872.222188-CDS-E-fasciculatus_F_contig13795:2635..2721Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13795 2636..2721 -
1695995732.1525602-CDS-E-fasciculatus_F_contig13795:2635..27211695995732.1525602-CDS-E-fasciculatus_F_contig13795:2635..2721Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13795 2636..2721 -
1622927872.235641-CDS-E-fasciculatus_F_contig13795:3170..35211622927872.235641-CDS-E-fasciculatus_F_contig13795:3170..3521Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13795 3171..3521 -
1695995732.1645532-CDS-E-fasciculatus_F_contig13795:3170..35211695995732.1645532-CDS-E-fasciculatus_F_contig13795:3170..3521Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13795 3171..3521 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13795.2795.1

>prot_E-fasciculatus_F_contig13795.2795.1 ID=prot_E-fasciculatus_F_contig13795.2795.1|Name=mRNA_E-fasciculatus_F_contig13795.2795.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=226bp
QTSQRAAGKEIKSKTNRPATSAGADDNGAAPRSAAAAEPEKAGDGEPPSA
ASAPAAAEEESTPVEQLSPGVRRGSGGTTYKLVESGAFEISDHTTDRVRQ
TPTPRTLVATVTLPADAEPTRKLDVVVALRRLTIGVLGDPEGSSPRYLDL
PLPYDVEDDSKCSAARDKSGLLKITMPVKQPAAPPLTVPPPPPAAAAAEV
CNDGGGGGAAAAADGDGDSEEHEVI*
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mRNA from alignment at E-fasciculatus_F_contig13795:1794..3521-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13795.2795.1 ID=mRNA_E-fasciculatus_F_contig13795.2795.1|Name=mRNA_E-fasciculatus_F_contig13795.2795.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1728bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13795:1794..3521- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGACCTCTCAGAGAGCCGCGGGCAAAGAAATCAAATCGAAGACGAATCG
ACCTGCAACCTCCGCCGGCGCCGACGACAACGGCGCGGCTCCACGGTCTG
CCGCGGCGGCGGAGCCTGAGAAGGCAGGGGACGGTGAGCCACCGTCCGCT
GCCTCTGCCCCGGCGGCAGCGGAGGAGGAGAGCACGCCCGTGGAGCAGCT
ATCGCCCGGGGTCAGGAGAGGGTCCGGGGGCACGACGTACAAGCTCGTCG
AGAGCGGGGCTTTCGAGATCTCGGACCACACGACGGACAGAGTCAGGCAG
ACCCCGACGCCGCGCACGTTGGTCGCGACGGTGACTCTCCCGGCAGATGC
GGTGAGGTTTTTCGATCTTCGAAATTATCCCTGGACTGTGGAGGGGGAGA
GAGGCACTCGTTGTCTCGTATGGCCAGCCGTCGTCTTTTTTGCCGCCACG
GACCTTGTATTGCTGACGCAAACAGGAGGGGGGAGGGCACAGCAGAGGAG
CTGCTTGTGGTCATACATAGCGGATGGTTTCATGGCCAAGGGATATACTG
TCTGGAGACAGGGTACATCATGCTCTTGCGTCGAACACCTGCCTCGGAGG
CAGGAATTATGCGCGTGCTGTGTTGACAGGAGGCGCGTCTCTCGGCCAGT
TCCGTGTCGTGTTTGTTTTTTATCGAACTGTCAGCGCCCGAGGCGACTAC
GTGGAGCAGAGACAAACCGCGTTTTCCCTCCCACCCTCGAAGAGACTAAA
TCCGCCTTCCTTTCTGCCGTGCTCCCGTCTCCGTCTCCGCCCGTTCGCAG
GAGCCAACGCGCAAGCTGGACGTGGTGGTGGCCCTGAGGAGGCTGACTAT
CGGCGTCCTCGGCGACCCAGAGGGAAGCTCACCCAGGTGTGGACGCGCGA
CCCCCCCCCACATGGTCGGGAGTTTTTTTTTTGCCGGCTGGCATGAGTGA
TTCTTCGGTGTATGTGTAGGCTTTAAACAGACTCAAAATAAGCCAGCAGG
GTTGTGTTACCACTCACTACTGCTGTAAAGACTTCCTTCCGACACAATGC
GTGCGTTTGGTGCAGTATCTCGAACAGGTAGTCTAGCTGCTTCGATGGTA
TTTACTTTTTCAACAACAGTCGCACACGTTTTCAACAACAGTCGCACACG
AAGCTTAACTGGTGCCGCTCCGCTGCCTCTATGGTCCCGAAACCACAAAA
CACCCCGGTGCTTCATTTTCTATCACAACGTCGAGACCAACCGGGCGAAC
ATTCCACTCGACGATATCGTTCTGATGGAGAGGACAAAATTGGAAAAATA
CACTCTGGCCTTCCCCACCTCCTGTGCGCCTTCGCTAGCAATGTGTGTGT
GCTACAGGTAGATTATTGTTTCACGTTTTCATGTTTGTTGTAATATCCCT
TGACCTGCCACTGGCGAGGGTGTTTTTTGCCTGTCCGTGACGACTTGTTT
TTTTGTTGGTATCTTTCTGCTGTTTTTTTTTTGTCAGATACCTCGACCTG
CCGCTGCCGTACGACGTGGAAGACGACTCCAAGTGCTCGGCTGCCCGCGA
CAAATCGGGCCTGCTCAAGATCACGATGCCGGTCAAGCAGCCCGCTGCAC
CGCCGTTAACCGTACCACCACCACCACCGGCGGCGGCGGCGGCAGAGGTT
TGCAATGATGGAGGCGGAGGTGGTGCCGCTGCCGCCGCCGATGGCGATGG
CGATTCTGAGGAGCACGAGGTAATATAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13795:1794..3521-

>mRNA_E-fasciculatus_F_contig13795.2795.1 ID=mRNA_E-fasciculatus_F_contig13795.2795.1|Name=mRNA_E-fasciculatus_F_contig13795.2795.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1356bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13795:1794..3521- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGACCTCTCAGAGAGCCGCGGGCAAAGAAATCAAATCGAAGACGAATCG
ACCTGCAACCTCCGCCGGCGCCGACGACAACGGCGCGGCTCCACGGTCTG
CCGCGGCGGCGGAGCCTGAGAAGGCAGGGGACGGTGAGCCACCGTCCGCT
GCCTCTGCCCCGGCGGCAGCGGAGGAGGAGAGCACGCCCGTGGAGCAGCT
ATCGCCCGGGGTCAGGAGAGGGTCCGGGGGCACGACGTACAAGCTCGTCG
AGAGCGGGGCTTTCGAGATCTCGGACCACACGACGGACAGAGTCAGGCAG
ACCCCGACGCCGCGCACGTTGGTCGCGACGGTGACTCTCCCGGCAGATGC
GCAGACCTCTCAGAGAGCCGCGGGCAAAGAAATCAAATCGAAGACGAATC
GACCTGCAACCTCCGCCGGCGCCGACGACAACGGCGCGGCTCCACGGTCT
GCCGCGGCGGCGGAGCCTGAGAAGGCAGGGGACGGTGAGCCACCGTCCGC
TGCCTCTGCCCCGGCGGCAGCGGAGGAGGAGAGCACGCCCGTGGAGCAGC
TATCGCCCGGGGTCAGGAGAGGGTCCGGGGGCACGACGTACAAGCTCGTC
GAGAGCGGGGCTTTCGAGATCTCGGACCACACGACGGACAGAGTCAGGCA
GACCCCGACGCCGCGCACGTTGGTCGCGACGGTGACTCTCCCGGCAGATG
CGGAGCCAACGCGCAAGCTGGACGTGGTGGTGGCCCTGAGGAGGCTGACT
ATCGGCGTCCTCGGCGACCCAGAGGGAAGCTCACCCAGGAGCCAACGCGC
AAGCTGGACGTGGTGGTGGCCCTGAGGAGGCTGACTATCGGCGTCCTCGG
CGACCCAGAGGGAAGCTCACCCAGATACCTCGACCTGCCGCTGCCGTACG
ACGTGGAAGACGACTCCAAGTGCTCGGCTGCCCGCGACAAATCGGGCCTG
CTCAAGATCACGATGCCGGTCAAGCAGCCCGCTGCACCGCCGTTAACCGT
ACCACCACCACCACCGGCGGCGGCGGCGGCAGAGGTTTGCAATGATGGAG
GCGGAGGTGGTGCCGCTGCCGCCGCCGATGGCGATGGCGATTCTGAGGAG
CACGAGGTAATATAGATACCTCGACCTGCCGCTGCCGTACGACGTGGAAG
ACGACTCCAAGTGCTCGGCTGCCCGCGACAAATCGGGCCTGCTCAAGATC
ACGATGCCGGTCAAGCAGCCCGCTGCACCGCCGTTAACCGTACCACCACC
ACCACCGGCGGCGGCGGCGGCAGAGGTTTGCAATGATGGAGGCGGAGGTG
GTGCCGCTGCCGCCGCCGATGGCGATGGCGATTCTGAGGAGCACGAGGTA
ATATAG
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