mRNA_E-fasciculatus_F_contig1379.2794.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1379.2794.1
Unique NamemRNA_E-fasciculatus_F_contig1379.2794.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1379.2794.1 vs. uniprot
Match: D8LC82_ECTSI (Haloacid dehalogenase (HAD) superfamily protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC82_ECTSI)

HSP 1 Score: 565 bits (1456), Expect = 3.540e-200
Identity = 279/290 (96.21%), Postives = 283/290 (97.59%), Query Frame = 3 
Query:   33 GMNNRVVKACIAAGCSVAGPVLAFSASGFGVKALDSSDGVSSSNHRPTPKSTPWMGQSFNAQAVSSMTRVVRHPALAVPHLSLAHIGRLDFEGLKAMGCKGIIFDKDNTLTAPYEDTVHPLVEEGLKRCMEVFEGSVCIMSNSAGTRDDPDYADAIRIETALGIPVLRHDEKKPGGIADVFAFFEGKDPEGGTVRLDELCFVGDRLLTDVVFGNLHGMLTVHTQPLTLKGDNRPAAVFRYLERKVFMGFFHQTCSVEPEAHRLCPEGARVLDREGDTAAEPEPAPVLHET 902
            GMNNRVVKACIAAGCSVAGPVLAFSASGFGVKALDSSD VSSS  RP PK TPWMGQSFNAQAVSSM+RVVRHPALAVPHLSLAHIGRLDFEGLKAMGCKG+IFDKDNTLTAPYEDTVHPLVEEGLKRCMEVFEGSVCIMSNSAGTRDDPDYADAIRIETALGIPVLRHDEKKPGGIADV AFFEGKDPEGGTVRLDELCFVGDRLLTDVVFGNLHGMLTVHTQPLTLKGDNRPAAVFRYLERKVFMGFFHQTCSVEP+AHRLCPEGARVLDREGDTAAEPEP PVL+ET
Sbjct:   20 GMNNRVVKACIAAGCSVAGPVLAFSASGFGVKALDSSDCVSSSTQRPNPKLTPWMGQSFNAQAVSSMSRVVRHPALAVPHLSLAHIGRLDFEGLKAMGCKGVIFDKDNTLTAPYEDTVHPLVEEGLKRCMEVFEGSVCIMSNSAGTRDDPDYADAIRIETALGIPVLRHDEKKPGGIADVLAFFEGKDPEGGTVRLDELCFVGDRLLTDVVFGNLHGMLTVHTQPLTLKGDNRPAAVFRYLERKVFMGFFHQTCSVEPQAHRLCPEGARVLDREGDTAAEPEPTPVLNET 309
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BLAST of mRNA_E-fasciculatus_F_contig1379.2794.1 vs. uniprot
Match: A0A6H5K9X3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9X3_9PHAE)

HSP 1 Score: 463 bits (1191), Expect = 4.820e-161
Identity = 224/235 (95.32%), Postives = 229/235 (97.45%), Query Frame = 3 
Query:  195 MGQSFNAQAVSSMTRVVRHPALAVPHLSLAHIGRLDFEGLKAMGCKGIIFDKDNTLTAPYEDTVHPLVEEGLKRCMEVFEGSVCIMSNSAGTRDDPDYADAIRIETALGIPVLRHDEKKPGGIADVFAFFEGKDPEGGTVRLDELCFVGDRLLTDVVFGNLHGMLTVHTQPLTLKGDNRPAAVFRYLERKVFMGFFHQTCSVEPEAHRLCPEGARVLDREGDTAAEPEPAPVLHE 899
            MGQSFNAQAVSSMTRVVRHPALAVPHLSLA+IGRLDFEGLKAMGCKG+IFDKDNTLTAPYEDTVHPLVEEGLKRCMEVFEGSVCIMSNSAGTRDDPDY  AIRIETALGIPVLRHDEKKPGGIADV AFF+GKDPEGGTVRLDELCFVGDRLLTDVVFGNLHGMLTVHTQPLTLKGDNRPAAVFRYLERKVFMGFFHQTCSVEP+AHRLCPEGARVLDREG TAAEPEP P L+E
Sbjct:    1 MGQSFNAQAVSSMTRVVRHPALAVPHLSLANIGRLDFEGLKAMGCKGVIFDKDNTLTAPYEDTVHPLVEEGLKRCMEVFEGSVCIMSNSAGTRDDPDYVHAIRIETALGIPVLRHDEKKPGGIADVLAFFKGKDPEGGTVRLDELCFVGDRLLTDVVFGNLHGMLTVHTQPLTLKGDNRPAAVFRYLERKVFMGFFHQTCSVEPQAHRLCPEGARVLDREGGTAAEPEPTPALNE 235
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BLAST of mRNA_E-fasciculatus_F_contig1379.2794.1 vs. uniprot
Match: A0A835Z207_9STRA (Mitochondrial PGP phosphatase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z207_9STRA)

HSP 1 Score: 278 bits (711), Expect = 7.510e-88
Identity = 133/224 (59.38%), Postives = 168/224 (75.00%), Query Frame = 3 
Query:  189 PWMGQSFNAQAVSSMTRVVRHPALAVPHLSLAHIGRLDFEGLKAMGCKGIIFDKDNTLTAPYEDTVHPLVEEGLKRCMEVFEGSVCIMSNSAGTRDDPDYADAIRIETALGIPVLRHDEKKPGGIADVFAFFEGKDPEGGTVRLDELCFVGDRLLTDVVFGNLHGMLTVHTQPLTLKGDNRPAAVFRYLERKVFMGFFHQTCSVEPEAHRLCPEGARVLDREGD 860
            PWMGQSFN++AV ++  V+RHP+LAVPHL+L +I +LDF  LKAMG +GIIFDKDNTLTAPY + +HP + +G +RC   F GSVCIMSNSAGT DD ++  AI+IET LGIPVLRH EKKPGG+ +V AFF  +  + G +   +LC +GDRLLTDVVFGNLHGMLTVHT+PLTL+GDN+ A V RY+E ++F    H   SVE   HRL     +++ + GD
Sbjct:    3 PWMGQSFNSKAVRTLGSVIRHPSLAVPHLALTNIAQLDFAALKAMGIRGIIFDKDNTLTAPYVEELHPAISDGFRRCQSHFGGSVCIMSNSAGTGDDVNFESAIKIETGLGIPVLRHREKKPGGLPEVLAFFRERCADEG-IEARDLCVIGDRLLTDVVFGNLHGMLTVHTKPLTLQGDNKVALVARYIESRIFFNIVHARFSVEAPQHRLSGSLQQLVLQNGD 225
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BLAST of mRNA_E-fasciculatus_F_contig1379.2794.1 vs. uniprot
Match: A0A7S1ISK9_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1ISK9_9EUGL)

HSP 1 Score: 242 bits (618), Expect = 2.910e-74
Identity = 120/200 (60.00%), Postives = 146/200 (73.00%), Query Frame = 3 
Query:  177 PKSTPW-MGQSFNAQAVSSMTRVVRHPALAVPHLSLAHIGRLDFEGLKAMGCKGIIFDKDNTLTAPYEDTVHPLVEEGLKRCMEVFEGSVCIMSNSAGTRDDPDYADAIRIETALGIPVLRHDEKKPGGIADVFAFFEGKDPEGGTVRLDELCFVGDRLLTDVVFGNLHGMLTVHTQPLTLKGDNRPAAVFRYLERKVFM 773
            P  + W  GQS+NA A+ ++ RV   P+LA+PH+++ HIG LDF  L+  GCKGI+FDKDNTLTAPY + VHPLV EGL RC+  F+G VCI+SNSAGT DD  Y  A +IE  LG+PV+RH EKKP G+ DV  FF  +   G  VR  EL  VGDRLLTDVVFGNL+GMLTVHT+PLTL+GDN+ A V R LE  VF+
Sbjct:   28 PTMSSWHAGQSWNANAMGALGRVAAQPSLAIPHVTVTHIGCLDFHALREAGCKGIVFDKDNTLTAPYVEEVHPLVREGLDRCLREFQGRVCILSNSAGTDDDEGYEAARKIEAGLGLPVIRHKEKKPAGLQDVLDFFHHQS--GEAVRPTELVMVGDRLLTDVVFGNLYGMLTVHTRPLTLEGDNKVARVIRPLETAVFL 225
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BLAST of mRNA_E-fasciculatus_F_contig1379.2794.1 vs. uniprot
Match: A0A448ZEQ0_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZEQ0_9STRA)

HSP 1 Score: 203 bits (517), Expect = 2.490e-59
Identity = 107/200 (53.50%), Postives = 136/200 (68.00%), Query Frame = 3 
Query:  195 MGQSFNAQAVSSMTRVVRHPALAVPHLSLAHIGRLDFEGLK-AMGCKGIIFDKDNTLTAPYEDTVHPLVEEGLKRCMEVFEG-SVCIMSNSAGTRDDPDYADAIRIETALGIPVLRHDEKKPGGIADVFAFFEGKDPEGGTVRLDELCFVGDRLLTDVVFGNLHGMLTVHTQPLTLKGDNR----PAAVFRYLERKVFMG 776
            M QS NA+A++++  V+RHP L VPH+S+A++  L++  +K   G + I+FDKDNTLTAPY+ TVH    +GLKR  E+F   +V IMSNSAGT+DDP Y DA  IE ALGI V+RHDEKKPGG+ +V   F+  DP         LC VGDRLLTDVVFGNLH MLT+HT PL    +NR    P+ + RY+E K   G
Sbjct:    1 MVQSLNAKALATLAYVLRHPTLIVPHVSVANVSELNYRAMKECAGIRAILFDKDNTLTAPYDMTVHRDAAKGLKRAKEIFGAENVAIMSNSAGTKDDPGYEDAKMIEEALGIAVIRHDEKKPGGLDEVLKHFDVDDPA-------TLCMVGDRLLTDVVFGNLHSMLTIHTLPLCKGAENRQDNTPSKIIRYIENKGLYG 193
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BLAST of mRNA_E-fasciculatus_F_contig1379.2794.1 vs. uniprot
Match: A0A7S2TGD2_9EUKA (Hypothetical protein n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TGD2_9EUKA)

HSP 1 Score: 196 bits (498), Expect = 8.300e-56
Identity = 96/195 (49.23%), Postives = 135/195 (69.23%), Query Frame = 3 
Query:  195 MGQSFNAQAVSSMTRVVRHPALAVPHLSLAHIGRLDFEGLKAMGCKGIIFDKDNTLTAPYEDTVHPLVEEGLKRCMEVFEG-SVCIMSNSAGTRDDPDYADAIRIETALGIPVLRHDEKKPGGIADVFAFFEGKDPEGGTVRLDELCFVGDRLLTDVVFGNLHGMLTVH-TQPLTLKGDNRPAAVFRYLERKVFM 773
            +GQS N  A+ ++ +V+R P+L +PH+S+ H+G LDF+ L+A G + ++FDKDNTLTAPY    HPL + G ++C+EVF   +V IMSNSAGT DD ++ +A  +E ALG+PVLRH  KKPGG A++ A +      GG +  D++C VGDRL TDV+FG LHG+L+V  TQ L  +GDN  A V + LE  + +
Sbjct:   79 LGQSLNLDAIGALAQVIRRPSLLLPHISVPHVGHLDFDALRASGIRAVVFDKDNTLTAPYSLEPHPLTKPGFEKCVEVFGAENVMIMSNSAGTDDDEEHREARVVEEALGVPVLRHRAKKPGGYAELAAHY------GGALTPDQMCIVGDRLFTDVLFGTLHGLLSVQVTQSLKHQGDNALARVIKALENGILL 267
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BLAST of mRNA_E-fasciculatus_F_contig1379.2794.1 vs. uniprot
Match: A0A8J9RZH6_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9RZH6_PHATR)

HSP 1 Score: 192 bits (488), Expect = 1.220e-55
Identity = 101/195 (51.79%), Postives = 128/195 (65.64%), Query Frame = 3 
Query:  195 MGQSFNAQAVSSMTRVVRHPALAVPHLSLAHIGRLDFEGLKAMGCKGIIFDKDNTLTAPYEDTVHPLVEEGLKRCMEVF-EGSVCIMSNSAGTRDDPDYADAIRIETALGIPVLRHDEKKPGGIADVFAFFEGKDPEGGTVRLDELCFVGDRLLTDVVFGNLHGMLTVHTQPLTLKG----DNRPAAVFRYLERK 764
            M QS N +A+ +M  V+R P L VP LS+A + +++F  LK  G   ++FDKDNTLT+PYE+ +HPL  +G+   + VF    V I+SNSAGT+DD DY DAIRIE  LGI V+RH+EKKPGG+ +V A F+  DP         LC VGDRLLTD+VFGNLHGMLTVH  PL        DN  A + R +E K
Sbjct:    1 MVQSINTKALLTMASVLRRPGLMVPQLSVATVSQMNFTALKDHGIAAVMFDKDNTLTSPYENEIHPLAAQGIDEALRVFGRDRVAILSNSAGTKDDVDYTDAIRIENVLGIQVIRHEEKKPGGLDEVLAHFDLTDPA-------TLCMVGDRLLTDIVFGNLHGMLTVHCLPLCSGSENSKDNWTAKLLRPMENK 188
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BLAST of mRNA_E-fasciculatus_F_contig1379.2794.1 vs. uniprot
Match: A0A6V3JXN8_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A6V3JXN8_9EUKA)

HSP 1 Score: 194 bits (494), Expect = 1.500e-55
Identity = 100/209 (47.85%), Postives = 134/209 (64.11%), Query Frame = 3 
Query:  195 MGQSFNAQAVSSMTRVVRHPALAVPHLSLAHIGRLDFEGLKAMGCKGIIFDKDNTLTAPYEDTVHPLVEEGLKRCMEVFEG-SVCIMSNSAGTRDDPDYADAIRIETALGIPVLRHDEKKPGGIADVFAFFEGKDPEGGTVRLDELCFVGDRLLTDVVFGNLHGMLTVH-TQPLTLKGDNRPAAVFRYLERKVFMGFFHQTCSVEPEAH 815
            +GQS N  A+ S+ RV+R P+L VPH+S+ H+G +DF  LKA G + ++FDKDNTLTAPY    HPL +    +C+E F   +V IMSNSAGT DD +Y +A  +E ALG+PVLRH  KKPGG  ++ A + G       +  D++C +GDRL TDV+FG LHG+LTVH TQ L  +GDN  A   + LE  + +    Q   V+P  H
Sbjct:   54 LGQSLNMDAIGSLARVLRKPSLLVPHVSVPHVGHMDFAALKASGIRAVVFDKDNTLTAPYSLEPHPLTKPAFAKCVEEFGAENVIIMSNSAGTNDDAEYREAKIVEDALGVPVLRHSAKKPGGFDELTAHYNG------ALTPDQICIIGDRLFTDVLFGTLHGLLTVHVTQSLKHEGDNVLARAIKALENGILLRLL-QGVGVKPIYH 255
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BLAST of mRNA_E-fasciculatus_F_contig1379.2794.1 vs. uniprot
Match: A0A1Z5JVZ9_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JVZ9_FISSO)

HSP 1 Score: 190 bits (483), Expect = 2.420e-54
Identity = 105/202 (51.98%), Postives = 136/202 (67.33%), Query Frame = 3 
Query:  195 MGQSFNAQAVSSMTRVVRHPALAVPHLSLAHIGRLDFEGLK-AMGCKGIIFDKDNTLTAPYEDTVHPLVEEGLKRCMEVF-EGSVCIMSNSAGT-RDDPDYADAIRIETALGIPVLRHDEKKPGGIADVFAFFEGKDPEGGTVRLDELCFVGDRLLTDVVFGNLHGMLTVHTQPLTLKG-----DNRPAAVFRYLERKVFMG 776
            M QS N++A+ ++  V R PAL VPHLS+  + +++++ LK   G + +IFDKDNTLTAPY   VHP   +GL+R ++VF +  V I+SNSAGT +DDPD+ DA++IE ALGI V+RH EKKPGG+ +V   F   DP        +LC VGDRLLTD+VFGN+HGMLTVHT PL  KG     DN  A + R  E KV  G
Sbjct:    1 MVQSVNSKAILTLASVARRPALLVPHLSVPTVSQINYDALKRCAGIEAVIFDKDNTLTAPYGSCVHPDASDGLQRVLDVFGKERVAILSNSAGTVQDDPDFRDALQIEEALGISVIRHKEKKPGGLEEVLQHFAMTDPA-------KLCMVGDRLLTDIVFGNIHGMLTVHTLPLC-KGRDNARDNWTAKILRPAENKVLYG 194
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BLAST of mRNA_E-fasciculatus_F_contig1379.2794.1 vs. uniprot
Match: W7U306_9STRA (Haloacid dehalogenase superfamily protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7U306_9STRA)

HSP 1 Score: 192 bits (488), Expect = 1.150e-53
Identity = 103/195 (52.82%), Postives = 133/195 (68.21%), Query Frame = 3 
Query:  177 PKSTPWMGQSFNAQAVSSMTRVVRHPALAVPHLSLAHIGRLDFEGLKAMGCKGIIFDKDNTLTAPYEDTVHPLVEEGLKRCMEVF-EGSVCIMSNSAGTRDDPDYADAIRIETALGIPVLRHDEKKPGGIADVFAFFEGKDPEGGTVRLDELCFVGDRLLTDVVFGNLHGMLTVHTQPLTLKGDNRPAAVFRYLE 758
            P ++  M QS N Q V ++ +V+R+P+L +PH+S+ HIG LDFE L+  G KG+IFDKDNT+TAPY D VH  V    +    VF    + I+SNSAGT DD  +A AIRIE++LG+PVLRH  KKPG I +V   F  K   G     ++LC +GDRLLTDV++GN  GMLTVHTQ LT +GDN+ AA+ R LE
Sbjct:   73 PPTSVVMVQSLNLQGVLAIGQVIRNPSLMLPHVSVKHIGFLDFELLRQAGIKGVIFDKDNTITAPYVDEVHEQVAGAFETSKRVFGPRKLIIISNSAGTLDDSGHAAAIRIESSLGVPVLRHAVKKPGAIPEVLEHF--KKECGPDTTYEDLCIIGDRLLTDVMWGNFAGMLTVHTQILTPEGDNKVAAIVRRLE 265
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1379.2794.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC82_ECTSI3.540e-20096.21Haloacid dehalogenase (HAD) superfamily protein n=... [more]
A0A6H5K9X3_9PHAE4.820e-16195.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z207_9STRA7.510e-8859.38Mitochondrial PGP phosphatase-domain-containing pr... [more]
A0A7S1ISK9_9EUGL2.910e-7460.00Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A448ZEQ0_9STRA2.490e-5953.50Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S2TGD2_9EUKA8.300e-5649.23Hypothetical protein n=1 Tax=Lotharella oceanica T... [more]
A0A8J9RZH6_PHATR1.220e-5551.79Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
A0A6V3JXN8_9EUKA1.500e-5547.85Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]
A0A1Z5JVZ9_FISSO2.420e-5451.98Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
W7U306_9STRA1.150e-5352.82Haloacid dehalogenase superfamily protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1379contigE-fasciculatus_F_contig1379:12595..16698 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score565.8
Seed ortholog evalue1.1e-158
Seed eggNOG ortholog2880.D8LC82
Preferred nameGEP4
KEGG rclassRC00017
KEGG koko:K01094
KEGG ReactionR02029
KEGG Pathwayko00564,ko01100,map00564,map01100
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005975,GO:0006629,GO:0006644,GO:0006650,GO:0006655,GO:0006793,GO:0006796,GO:0006996,GO:0007005,GO:0007006,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0008962,GO:0009058,GO:0009987,GO:0016043,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019637,GO:0031974,GO:0032048,GO:0032049,GO:0042578,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044262,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046471,GO:0046474,GO:0046486,GO:0046838,GO:0061024,GO:0070013,GO:0071704,GO:0071840,GO:0090407,GO:1901576
EggNOG free text desc.phosphatase
EggNOG OGsCOG1011@1,KOG2961@2759
EC3.1.3.27
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionhaloacid dehalogenase (HAD) superfamily protein
Ec32 orthologEc-20_004780.1
Exons7
Model size1378
Cds size870
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927871.988043-UTR-E-fasciculatus_F_contig1379:12594..130671622927871.988043-UTR-E-fasciculatus_F_contig1379:12594..13067Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1379 12595..13067 -
1695995732.0408406-UTR-E-fasciculatus_F_contig1379:12594..130671695995732.0408406-UTR-E-fasciculatus_F_contig1379:12594..13067Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1379 12595..13067 -
1622927872.1512742-UTR-E-fasciculatus_F_contig1379:16663..166981622927872.1512742-UTR-E-fasciculatus_F_contig1379:16663..16698Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1379 16664..16698 -
1695995732.1249292-UTR-E-fasciculatus_F_contig1379:16663..166981695995732.1249292-UTR-E-fasciculatus_F_contig1379:16663..16698Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1379 16664..16698 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927872.0137258-CDS-E-fasciculatus_F_contig1379:13067..132081622927872.0137258-CDS-E-fasciculatus_F_contig1379:13067..13208Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1379 13068..13208 -
1695995732.055656-CDS-E-fasciculatus_F_contig1379:13067..132081695995732.055656-CDS-E-fasciculatus_F_contig1379:13067..13208Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1379 13068..13208 -
1622927872.0391202-CDS-E-fasciculatus_F_contig1379:13656..138091622927872.0391202-CDS-E-fasciculatus_F_contig1379:13656..13809Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1379 13657..13809 -
1695995732.0640109-CDS-E-fasciculatus_F_contig1379:13656..138091695995732.0640109-CDS-E-fasciculatus_F_contig1379:13656..13809Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1379 13657..13809 -
1622927872.0577784-CDS-E-fasciculatus_F_contig1379:14234..143731622927872.0577784-CDS-E-fasciculatus_F_contig1379:14234..14373Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1379 14235..14373 -
1695995732.0736942-CDS-E-fasciculatus_F_contig1379:14234..143731695995732.0736942-CDS-E-fasciculatus_F_contig1379:14234..14373Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1379 14235..14373 -
1622927872.0805323-CDS-E-fasciculatus_F_contig1379:14610..147321622927872.0805323-CDS-E-fasciculatus_F_contig1379:14610..14732Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1379 14611..14732 -
1695995732.082057-CDS-E-fasciculatus_F_contig1379:14610..147321695995732.082057-CDS-E-fasciculatus_F_contig1379:14610..14732Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1379 14611..14732 -
1622927872.099184-CDS-E-fasciculatus_F_contig1379:15196..153081622927872.099184-CDS-E-fasciculatus_F_contig1379:15196..15308Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1379 15197..15308 -
1695995732.0928757-CDS-E-fasciculatus_F_contig1379:15196..153081695995732.0928757-CDS-E-fasciculatus_F_contig1379:15196..15308Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1379 15197..15308 -
1622927872.116271-CDS-E-fasciculatus_F_contig1379:15632..157011622927872.116271-CDS-E-fasciculatus_F_contig1379:15632..15701Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1379 15633..15701 -
1695995732.1012475-CDS-E-fasciculatus_F_contig1379:15632..157011695995732.1012475-CDS-E-fasciculatus_F_contig1379:15632..15701Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1379 15633..15701 -
1622927872.1356895-CDS-E-fasciculatus_F_contig1379:16529..166631622927872.1356895-CDS-E-fasciculatus_F_contig1379:16529..16663Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1379 16530..16663 -
1695995732.1130586-CDS-E-fasciculatus_F_contig1379:16529..166631695995732.1130586-CDS-E-fasciculatus_F_contig1379:16529..16663Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1379 16530..16663 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1379.2794.1prot_E-fasciculatus_F_contig1379.2794.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1379 13068..16663 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1379.2794.1

>prot_E-fasciculatus_F_contig1379.2794.1 ID=prot_E-fasciculatus_F_contig1379.2794.1|Name=mRNA_E-fasciculatus_F_contig1379.2794.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=290bp
MNNRVVKACIAAGCSVAGPVLAFSASGFGVKALDSSDGVSSSNHRPTPKS
TPWMGQSFNAQAVSSMTRVVRHPALAVPHLSLAHIGRLDFEGLKAMGCKG
IIFDKDNTLTAPYEDTVHPLVEEGLKRCMEVFEGSVCIMSNSAGTRDDPD
YADAIRIETALGIPVLRHDEKKPGGIADVFAFFEGKDPEGGTVRLDELCF
VGDRLLTDVVFGNLHGMLTVHTQPLTLKGDNRPAAVFRYLERKVFMGFFH
QTCSVEPEAHRLCPEGARVLDREGDTAAEPEPAPVLHET*
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mRNA from alignment at E-fasciculatus_F_contig1379:12595..16698-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1379.2794.1 ID=mRNA_E-fasciculatus_F_contig1379.2794.1|Name=mRNA_E-fasciculatus_F_contig1379.2794.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4104bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1379:12595..16698- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGCACGCGCAGCAGCGACATTGGTGCACCGGAGGGATGAACAACCGCGTG
GTGAAAGCCTGCATCGCCGCGGGGTGTTCGGTAGCAGGGCCGGTGTTGGC
CTTTTCGGCCTCTGGGTTTGGCGTGAAGGCGCTGGACAGCAGTGACGGTG
TGTCGTCGTCTAATCACAGGTATGCACGTATGCATGCAGCAGTGAGCTAT
TTAGTGTTGGACTGGAAATGCTGCCATTTCTAGGCTATGCCTCCACCAGC
AGTCTGCATCGTGCGCTGCTCTACAAGTTGTCACTCCCCCCAGTGTCCCC
TAGCCAGCATGCGGTTTACCTATGAGTGCCAAGTATATGTCAAATGGTCC
TCAATAGGCACATGTCGCGGATGATGTTTGACGAACAAATTTGAATTGCA
TGAGGCTGTATCTTGCTCTCTCCGCCTTCCCACCTGGAGAGTTGGAAGTT
GGAAGTTGACGCTCGAAGGCACTACAATTGTACTGCTGTAGCAGGAAACA
GCAGTTCGCGCCTCGTGGCAGGTATCTGTCGGCTTCCTTTCACATTCCCG
ACTTTGTTGTTTCCTCGGTAGTATACTGTACTCAAGGTGAACACGTCTGC
TCTACTGCTGTTTCAAAGCAGGAGAAAGATCCGTCCACATCGTTGCCGTA
CTCTGTACGGTATGGTTTGTGAGTCCTCGCTGGATTTGTGTCATCGTAGA
CATGCAGCAGCTACTGGTGTCGACACTGTATATACATAGGTTATTTAGTG
TAAATACGCGTGGTGTTCGCAGCGCTGCTGTATGCATATGCTGTATTGGC
TGTTAGGAAAGGGGATAATCCCTTTAGAACCCCCCGTCCTTTCCGAGAAC
AGGGACATTGGCCTGGAACCACGTACATGTTAACTGCTGTGACGGCGACA
CGAGCCGCTCTTAGCCCGGGATGGCTCAGGCAAGGATGAAGGATTGCCGC
TGAACGAAAGTTGATGCATGTGTCACAATCTCTTGCCATTTATGCAGGCC
TACCCCAAAATCAACTCCCTGGATGGGACAGAGCTTCAATGCGCAAGCTG
TATCTTCCATGACCAGGTGAATGGCGGCCACACGGCAACAGCAGATGGCA
TTCCAGCAGTCTCTCGGAGTTTTCAACGGTATACTATCAGCTATTGCACG
CCTGGAAGGGGATTTACACCTCTGATGCACGGCAGTTCATACTATTTGTA
GTTGGGAACCAGATGGTATCGCTGCCGCAGCAGTAGATTTTAACGGGTCT
CCGCGCAGGCAACTGCTTGTATGTATGCCAGCAGCGGGCAAGACTATCTA
CCAAGCCAAAGAGGGCTCGATTTCTCCACAACCTCCAACCTCTTTCCTGC
TCCTGTTCACGCGTTGTTGGAACGACGCGAAACACGACAGGGTGGTCCGA
CATCCTGCGCTCGCGGTGCCACACTTGTCGTTGGCTCACATCGGGCGGTT
GGATTTTGAGGGCCTGAAGGCAATGGGCTGCAAGGGGATCATCTTCGACA
AGGTTAACAGCATTAGTGACTGCGAAGTGCCCCCCCCCCCCTCGCCACAC
GGTAGGTTGCGTTAAGATATCACACCCCCTGGACCAATTTTTAAAGCTCT
ATCGATTCGATTACTCTTATCACGACGAAGAGGATGCCAAACTCAAAGGA
CGGTACGTTTTAGGCGAGCTCTTGGACGAGAGAGACCGTTCCAACACCGC
CATTTTCGGAGCCGTCACTCTGTTTCAGCTGCAGAGTAATCGAGCTTTGA
AAATAGGTCCCCGGGATTTGATATCTTATGCAACCTACGGTAAGCTTTAC
CCCAGCATTTGTTGGACTACAACACGTTAGGGCGGTTAAGCGTCCGGCAA
GCACAGGGATGGAGGATGGAAGAATCTCTTCCTGTGCTGTGTCACGCGAG
CATCGATCGCCGCCGTGCTGACTCGTTCGGCCTCCCTGGACTACTGCTGT
TTCCCTTGATGATCAGGACAACACGTTGACGGCTCCGTATGAGGACACCG
TGCACCCCCTGGTGGAGGAAGGCCTGAAGCGGTGCATGGAGGTGTTCGAG
GGAAGCGTGTGCATAATGTCCAACTCGGCGGGCACGAGGTATGCGACTTG
CGGCGTCTCCGTTGTCCTGTCTCTGAGGTTCGGCCGGTTTGCCATGACGA
TTAAAACTATTGCCGTCGTGGTTTCAGCTTCGCCGCCGATAGGAAGTTGG
CATTGGCAACGGCAAGAATAGCGTCTGAGAAGAAATAAAACATAAAATAA
GATGTCCTTCGTTTACGCTCAAACTTGCATGTGCACGGAATACGATACGT
GCCCATTCGTTCGTCTTCTTCGCAGGGACGATCCAGACTATGCAGACGCT
ATCCGCATCGAAACGGCACTCGGGATCCCGGTCTTGAGGCACGACGAAAA
GAAACCGGGAGGGATAGCGGACGTTTTCGCATTTTTCGAGGGGAAGGATC
CTGAGGGAGGCACTGTGAGTCATACGGATGGTCGATATTATCTCTATAGT
TGCTCCTAGCTCAAGCCCCAGATGCAGCAGCGCACGCGGACATATACGCC
CGAGAAAGCTCTGGCGTGTCGGTGGGTATGCGTGCAACATGGCACTGTCT
GCTGCGGATTGTCTGTGCTATTGTACGGACCGCTGTGTCGATCGCGAAGC
TCCGGAATTTGTACCTCGAATTTTGGCACGCTTGCCTACTCAATACGTAC
GTTCGCGTCGCTCATGTTGTGCAGACATCACCGTTTTGCTGGTGAGGGAG
GTAGCGACACCCCTCGTACATTGTTTCATGCAGAAAACGCCCATTGTATC
CCTCCGGGTAGGTTTTATCTTTTCTTTCAAGATCGCATGTTTCGACGCTT
TGCCTGTACGTGCAACGTTGATCTCCTCTACCACCTCAGGTGCGACTGGA
CGAGCTGTGCTTTGTAGGCGACCGCCTCCTCACAGACGTGGTTTTCGGCA
ACCTGCACGGCATGCTCACGGTGCACACTCAGCCGCTGACGCTCAAGGGG
GACAACCGGCCAGCCGCTGTCTTCCGCTACTTGGAGAGGAAGGTAAGTCG
CAATCGAATGTTCCCAAAATTGCTGCGGAATGTAGCGGGCAAGCGGGAGT
CTTTCTTCGTCAGTGACGGCCAACTCACTGCTATTGTATGATTGAACCGC
ATGCTACAGTTTCTGTTCTGCGAAGTCTGGTGGGGATGGGAATGGGGATG
GGGAAGGCGTGGACACCACGGTAGAGGAAGGGCCATGTATGTGGAAGCCT
CAACCTTAACCTTGACCTTGACCTTAACCTTGACCTCGGTGTTGTTTTGT
TGCACGTGGTGTTGCTTGGGCCGCCCATATTGTTACGTATTTTTTTGTTC
AAGATGTGTTCTGAAATTGTTCGGATGTCTTTTTTAGATTGTGTCTTGTT
TATTCAATTCACTTGTTCGGGTGTGTTTTTTTCCCTTCGTGTAAGAAACT
CTTCGCCCCACTGCTCTTGAACAACCCATCAACGCGGCAGGTGTTCATGG
GCTTCTTCCACCAGACTTGTTCGGTAGAGCCGGAAGCACATCGCCTGTGC
CCCGAGGGGGCGAGAGTCTTGGACCGAGAGGGGGACACTGCCGCGGAACC
AGAACCAGCACCTGTCTTGCATGAGACCTAGCTAATGTTTACTCTCCGGA
AAAAACCCACCGCTATTGTAGTATGGCAGTCCCCCACGTTGGCTTGAGGT
CGCTGGACATCGTGTTCTGCTTATTTCCTCTTTTTTACTAGTGCTTTTTG
GCTCCTTTGTTACCGTGTCCATGTGTTGTGGTGATGTTTGTACAGTTTAT
CGAAAAGGCGTGGTTGTTTTCAGATGTGCTTGACATGTTTGCATCTTTTT
GTCGTCGCAAGATGGAGTCAGGCATCGCTTTCAGGCACTGTTTTCGCGGG
TATGTCAACCAGCGGTATCACGTTGCTTGGACGCCCGCAATAGTTAGTTG
CAACACACGTCTCGCCACCCCCTCCCCCCAAGAGGAAAAGACACGATTGA
TTAACGGGGTTGTTGGAGTTGGTCATGACATGGGAAGCAAAGAAAGGGTT
CGTCCGTTGTTCAAGAGGTGCAGATTTAAACAGCGAAACATATTTTATGC
ACAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1379:12595..16698-

>mRNA_E-fasciculatus_F_contig1379.2794.1 ID=mRNA_E-fasciculatus_F_contig1379.2794.1|Name=mRNA_E-fasciculatus_F_contig1379.2794.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1740bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1379:12595..16698- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAACAACCGCGTGGTGAAAGCCTGCATCGCCGCGGGGTGTTCGGTAGC
AGGGCCGGTGTTGGCCTTTTCGGCCTCTGGGTTTGGCGTGAAGGCGCTGG
ACAGCAGTGACGGTGTGTCGTCGTCTAATCACAGATGAACAACCGCGTGG
TGAAAGCCTGCATCGCCGCGGGGTGTTCGGTAGCAGGGCCGGTGTTGGCC
TTTTCGGCCTCTGGGTTTGGCGTGAAGGCGCTGGACAGCAGTGACGGTGT
GTCGTCGTCTAATCACAGGCCTACCCCAAAATCAACTCCCTGGATGGGAC
AGAGCTTCAATGCGCAAGCTGTATCTTCCATGACCAGGCCTACCCCAAAA
TCAACTCCCTGGATGGGACAGAGCTTCAATGCGCAAGCTGTATCTTCCAT
GACCAGGGTGGTCCGACATCCTGCGCTCGCGGTGCCACACTTGTCGTTGG
CTCACATCGGGCGGTTGGATTTTGAGGGCCTGAAGGCAATGGGCTGCAAG
GGGATCATCTTCGACAAGGGTGGTCCGACATCCTGCGCTCGCGGTGCCAC
ACTTGTCGTTGGCTCACATCGGGCGGTTGGATTTTGAGGGCCTGAAGGCA
ATGGGCTGCAAGGGGATCATCTTCGACAAGGACAACACGTTGACGGCTCC
GTATGAGGACACCGTGCACCCCCTGGTGGAGGAAGGCCTGAAGCGGTGCA
TGGAGGTGTTCGAGGGAAGCGTGTGCATAATGTCCAACTCGGCGGGCACG
AGGACAACACGTTGACGGCTCCGTATGAGGACACCGTGCACCCCCTGGTG
GAGGAAGGCCTGAAGCGGTGCATGGAGGTGTTCGAGGGAAGCGTGTGCAT
AATGTCCAACTCGGCGGGCACGAGGGACGATCCAGACTATGCAGACGCTA
TCCGCATCGAAACGGCACTCGGGATCCCGGTCTTGAGGCACGACGAAAAG
AAACCGGGAGGGATAGCGGACGTTTTCGCATTTTTCGAGGGGAAGGATCC
TGAGGGAGGCACTGGACGATCCAGACTATGCAGACGCTATCCGCATCGAA
ACGGCACTCGGGATCCCGGTCTTGAGGCACGACGAAAAGAAACCGGGAGG
GATAGCGGACGTTTTCGCATTTTTCGAGGGGAAGGATCCTGAGGGAGGCA
CTGTGCGACTGGACGAGCTGTGCTTTGTAGGCGACCGCCTCCTCACAGAC
GTGGTTTTCGGCAACCTGCACGGCATGCTCACGGTGCACACTCAGCCGCT
GACGCTCAAGGGGGACAACCGGCCAGCCGCTGTCTTCCGCTACTTGGAGA
GGAAGGTGCGACTGGACGAGCTGTGCTTTGTAGGCGACCGCCTCCTCACA
GACGTGGTTTTCGGCAACCTGCACGGCATGCTCACGGTGCACACTCAGCC
GCTGACGCTCAAGGGGGACAACCGGCCAGCCGCTGTCTTCCGCTACTTGG
AGAGGAAGGTGTTCATGGGCTTCTTCCACCAGACTTGTTCGGTAGAGCCG
GAAGCACATCGCCTGTGCCCCGAGGGGGCGAGAGTCTTGGACCGAGAGGG
GGACACTGCCGCGGAACCAGAACCAGCACCTGTCTTGCATGAGACCTAGG
TGTTCATGGGCTTCTTCCACCAGACTTGTTCGGTAGAGCCGGAAGCACAT
CGCCTGTGCCCCGAGGGGGCGAGAGTCTTGGACCGAGAGGGGGACACTGC
CGCGGAACCAGAACCAGCACCTGTCTTGCATGAGACCTAG
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