mRNA_E-fasciculatus_F_contig1379.2793.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1379.2793.1
Unique NamemRNA_E-fasciculatus_F_contig1379.2793.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1379.2793.1 vs. uniprot
Match: A0A6H5KM79_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM79_9PHAE)

HSP 1 Score: 796 bits (2057), Expect = 1.430e-285
Identity = 407/459 (88.67%), Postives = 424/459 (92.37%), Query Frame = 1 
Query:  223 GPKGLTSLSAGNAFVSPATYTTQPGERAVKEKAPAAVVNTLESRYLSPSTRCLTPSHEREAKGAQSPGPGIYYPHEAWDFGSPKDWNRVNKSDKPGRMPSSRSFNTKMTWGEATMPRPPNPAKAAQIPTKEERAWLSKRRGSARPSTAPRCMWLNGVSTRGGLQAWGDVATNTGPIHVGNKGNCASPWDRPTPRRGPDSQRRGPIHSREARATSPGFRETRYLNRDLTRKGACRATDTPGPGQYSVRPPLERGTSFAGPRRQSKCSKAVTVNALVASAKGRAASDEKTITGAKNGMARRGGDRQSRPRPSTAAPSQRLSLPLKGRESPGPAYALPSDFDQKVVNKKTFHPPRCSESSPFGTEKSRETGRSARNCPHADDNGTVGVKKTKRLPKARREAS-GSVAKSGRAVLAIGRALGVPVKTCMGRGILLRIRADGMTFVRLPWGVLYTTEVLTHGDN 1596
            G  GLTSLSAGNAFVSPATYTTQPGERAVKEKAPAAVVNTLESRYLSPSTRCLTPSHEREAKGAQSPGP +YYPHEAWDFG PK WNRVNKSDKPGRMPSSRSFN K+TWGEATMPRPPNP KAAQIPTKEERAWLSKRRG+ARPSTAPRCMWLNGV+TRGGLQAWGDVATNTGPIHVGNKGNCASPWDRPTPRRGPDSQRRGPIHSRE RATSPGFRETRYLNRDLTRKGAC+ATDTPGPGQYS+RPPLERGTSFAGPRR +KCSKA TVNA+VASAKGRAAS EKT +GAKNGM R GGDRQSRP   + APSQRLS+PLKGRESPGPAYALPSDFDQK VNKKTFHPPRC+ +SPFGTE+ R TGRSA   P AD++G V  K+TKRLPKARREAS G VAKSGR V AIGRALGVPV TCMGRGILLRIRADGMTFVRLPWGVLYTTEVLTHG N
Sbjct:  107 GTAGLTSLSAGNAFVSPATYTTQPGERAVKEKAPAAVVNTLESRYLSPSTRCLTPSHEREAKGAQSPGPAVYYPHEAWDFGPPKHWNRVNKSDKPGRMPSSRSFNAKVTWGEATMPRPPNPVKAAQIPTKEERAWLSKRRGTARPSTAPRCMWLNGVNTRGGLQAWGDVATNTGPIHVGNKGNCASPWDRPTPRRGPDSQRRGPIHSREVRATSPGFRETRYLNRDLTRKGACKATDTPGPGQYSIRPPLERGTSFAGPRRPTKCSKAATVNAMVASAKGRAASYEKT-SGAKNGMVR-GGDRQSRP---STAPSQRLSIPLKGRESPGPAYALPSDFDQKFVNKKTFHPPRCTGTSPFGTEEPRGTGRSANLAPRADEDGHVRAKQTKRLPKARREASSGPVAKSGR-VDAIGRALGVPVNTCMGRGILLRIRADGMTFVRLPWGVLYTTEVLTHGGN 559
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1379.2793.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KM79_9PHAE1.430e-28588.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1379contigE-fasciculatus_F_contig1379:9541..12375 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-20_004790.1
Exons4
Model size1602
Cds size1602
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1379.2793.1prot_E-fasciculatus_F_contig1379.2793.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1379 9541..12375 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927871.2144048-CDS-E-fasciculatus_F_contig1379:9540..97711622927871.2144048-CDS-E-fasciculatus_F_contig1379:9540..9771Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1379 9541..9771 +
1695995732.008819-CDS-E-fasciculatus_F_contig1379:9540..97711695995732.008819-CDS-E-fasciculatus_F_contig1379:9540..9771Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1379 9541..9771 +
1622927871.224823-CDS-E-fasciculatus_F_contig1379:10483..105701622927871.224823-CDS-E-fasciculatus_F_contig1379:10483..10570Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1379 10484..10570 +
1695995732.0163174-CDS-E-fasciculatus_F_contig1379:10483..105701695995732.0163174-CDS-E-fasciculatus_F_contig1379:10483..10570Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1379 10484..10570 +
1622927871.2378418-CDS-E-fasciculatus_F_contig1379:10797..111591622927871.2378418-CDS-E-fasciculatus_F_contig1379:10797..11159Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1379 10798..11159 +
1695995732.0239553-CDS-E-fasciculatus_F_contig1379:10797..111591695995732.0239553-CDS-E-fasciculatus_F_contig1379:10797..11159Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1379 10798..11159 +
1622927871.5052154-CDS-E-fasciculatus_F_contig1379:11453..123751622927871.5052154-CDS-E-fasciculatus_F_contig1379:11453..12375Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1379 11454..12375 +
1695995732.0318344-CDS-E-fasciculatus_F_contig1379:11453..123751695995732.0318344-CDS-E-fasciculatus_F_contig1379:11453..12375Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1379 11454..12375 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1379.2793.1

>prot_E-fasciculatus_F_contig1379.2793.1 ID=prot_E-fasciculatus_F_contig1379.2793.1|Name=mRNA_E-fasciculatus_F_contig1379.2793.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=534bp
MVLFGAYHTAERFFDDDRLTSHFPGPGSYSFKSTVEGVPTSRRYASPLVE
DGSLRPDGSAILFRERDCWVRGGEGPKGLTSLSAGNAFVSPATYTTQPGE
RAVKEKAPAAVVNTLESRYLSPSTRCLTPSHEREAKGAQSPGPGIYYPHE
AWDFGSPKDWNRVNKSDKPGRMPSSRSFNTKMTWGEATMPRPPNPAKAAQ
IPTKEERAWLSKRRGSARPSTAPRCMWLNGVSTRGGLQAWGDVATNTGPI
HVGNKGNCASPWDRPTPRRGPDSQRRGPIHSREARATSPGFRETRYLNRD
LTRKGACRATDTPGPGQYSVRPPLERGTSFAGPRRQSKCSKAVTVNALVA
SAKGRAASDEKTITGAKNGMARRGGDRQSRPRPSTAAPSQRLSLPLKGRE
SPGPAYALPSDFDQKVVNKKTFHPPRCSESSPFGTEKSRETGRSARNCPH
ADDNGTVGVKKTKRLPKARREASGSVAKSGRAVLAIGRALGVPVKTCMGR
GILLRIRADGMTFVRLPWGVLYTTEVLTHGDNPY
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mRNA from alignment at E-fasciculatus_F_contig1379:9541..12375+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1379.2793.1 ID=mRNA_E-fasciculatus_F_contig1379.2793.1|Name=mRNA_E-fasciculatus_F_contig1379.2793.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2835bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1379:9541..12375+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTGCTGTTTGGAGCATACCACACTGCGGAGCGCTTCTTCGATGACGA
CAGGCTAACCTCGCATTTTCCTGGACCGGGTTCGTACTCATTTAAGTCTA
CGGTCGAGGGAGTCCCAACGTCACGGCGGTACGCAAGTCCACTCGTGGAG
GACGGTAGCCTTAGGCCGGACGGGAGCGCAATATTGTTCAGAGAACGAGA
CTGCTGGGTTAGGGGGGGCGAGGGTCCAAAGGTGAGTTTTATTACCCGGC
GAACACGCCCTCTACTTTCTCGGTGGCGAAGAGTGGACTAAAGGGACAAC
TGAATGACAAATTGACCTACGGCTGTATGTCTACACTGACTACGGACCGG
CGAACCGTTCATTGAATATTCTACGCCGTGTGGTGAAATACCGCACCACG
CCCTCAGTACGGACATGCAAAGCTCGATTGCTGCACGACATGTAGGATGC
CAAAATCATACCACATATTGTACGTGTTCGGCAAGCCCTCAACGAGACGG
TTCCAACGGTATTGTTTTTTTCAGCGTCACCACTCGCTAGACTATGCTGA
GGAGGAACCGAGGTCTGAAAACCGGTCAAGGGGGTGAGGTACTCAGTGAG
ATACTCAGTGAGGTATCTTATGTCACCTACGGTAGGCCTATACATACATG
TACACTGCAATATTCACTGCCCTATCGACTTTGCAAACACCGAAATCGGT
GAAACTGCCCGGTTTCGGAAGTGTAGCTAGCACCACCACGGAAGAAATTG
GCAATGAAGAAACTTTGAGCTCCCTCTTTGCCCAATTTATCACGTTATTC
TCTGACCTTGTACCGCGCCTATGCCGTGGCTGCTGATAGACCACGAAGCA
ATGAGAACCCGAGCCCCGTGCAAAAAACAAGTAGGAGTTCTGAACGCGTG
TTATACATCCTGTTCGGGATTGGGTGCCGTGTTGTGCAAACAGGGACTCA
CGAGCTTGTCTGCCGGCAATGCTTTCGTCAGCCCGGCGACGTACACCACA
CAGCCTGGGGAGCGCGCCGTCAAGGAAAAGGTGAAGCGGGGAACATACAT
TATGTAGTAGATCATTGCCGTGTTGTAGGGTGACTTTTCTTTCCCTTCTT
CGGTGCGAAAAAGTTCTCGCCCTCGAAACTGCAGCTACGACAGAAACAGC
CCTTTCGGCGTTTCCCCCGCAACAGCAAATGTTATTCACCGTTCTGAAAA
TAAGACCAATATTTCACACGCATGATCACCGCTTTTTCTACTGTTTTGGC
CGTTCAGGCACCTGCCGCAGTCGTCAACACCCTCGAGAGTCGGTACCTCA
GCCCGTCAACACGATGCCTCACACCAAGCCACGAACGAGAAGCCAAAGGG
GCACAGAGTCCCGGCCCGGGGATATATTACCCCCATGAGGCGTGGGATTT
CGGGTCACCCAAGGATTGGAACCGAGTTAACAAGTCCGACAAACCGGGCC
GGATGCCAAGCAGTAGGAGTTTCAACACCAAGATGACTTGGGGCGAGGCA
ACCATGCCGCGTCCGCCTAACCCGGCGAAAGCAGCACAGATCCCGACGAA
GGAGGAGCGGGCGTGGCTGTCGAAAAGGCGGGGGTCGGCTCGCCCCAGCA
CAGCCCCACGATGTATGTGGTAAGTCTACCTCACAATGGTACGTGCGTTG
TGGGGAACATCCGGCAGCGCGTTGTCGTGCCTTGGAAAGTCATGAATCGG
AAAGTGCCCCTTGCTGCTCAATGTGTTTACACTAGGCGAGACCGAAACGC
GAAGCTGTTTGACCTTGCACCGATCGGACCGCGTGCATATTTAGCGCGGC
CAGGTTCACTCGAAGGTTGGTAAACCAAACCGTTTTGCACCCAGCAGTGC
CGTAGCTGTTACAAACGTTCTTCGAATGATCCCTGAACCAACGCAACTTC
GTGCGCGAACCAGGTTGAACGGCGTGAGCACGCGAGGGGGGCTCCAGGCG
TGGGGCGACGTTGCCACGAACACCGGGCCAATACACGTGGGGAACAAGGG
CAACTGTGCATCACCTTGGGACCGACCAACCCCTCGCCGAGGACCCGACT
CACAACGTCGAGGCCCGATACACTCGCGCGAGGCACGGGCAACATCGCCT
GGTTTCCGCGAAACGCGTTACCTGAACCGCGACCTAACTCGGAAAGGAGC
ATGTAGAGCAACAGACACGCCAGGCCCCGGGCAGTACAGCGTCCGTCCTC
CGTTAGAGCGCGGGACCAGTTTCGCCGGCCCCAGGCGTCAAAGCAAGTGC
AGCAAGGCTGTGACGGTGAACGCTTTGGTGGCATCTGCAAAAGGCCGGGC
GGCATCAGACGAAAAGACTATTACCGGGGCGAAGAACGGAATGGCACGGC
GAGGAGGAGACCGGCAATCACGACCACGACCGTCGACGGCCGCGCCATCG
CAGCGTCTTTCGTTGCCGCTCAAAGGGCGAGAGAGCCCTGGCCCGGCGTA
CGCTTTACCGAGCGATTTCGACCAGAAGGTCGTAAACAAGAAGACCTTCC
ACCCCCCGCGGTGCAGCGAATCGTCGCCGTTCGGGACGGAGAAGTCTAGA
GAAACAGGGCGGAGTGCAAGAAATTGTCCACACGCTGACGACAACGGAAC
CGTTGGCGTGAAGAAGACAAAGCGTCTGCCGAAAGCTCGGCGGGAGGCAT
CCGGATCTGTGGCGAAGTCGGGGAGGGCTGTCCTCGCTATCGGTAGGGCT
TTGGGAGTTCCTGTCAAGACGTGCATGGGGAGGGGCATCCTCTTGCGAAT
TCGTGCCGATGGCATGACGTTCGTAAGGTTGCCTTGGGGCGTGTTATACA
CTACGGAGGTGCTGACCCATGGAGACAACCCTTAT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1379:9541..12375+

>mRNA_E-fasciculatus_F_contig1379.2793.1 ID=mRNA_E-fasciculatus_F_contig1379.2793.1|Name=mRNA_E-fasciculatus_F_contig1379.2793.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3204bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1379:9541..12375+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTGCTGTTTGGAGCATACCACACTGCGGAGCGCTTCTTCGATGACGA
CAGGCTAACCTCGCATTTTCCTGGACCGGGTTCGTACTCATTTAAGTCTA
CGGTCGAGGGAGTCCCAACGTCACGGCGGTACGCAAGTCCACTCGTGGAG
GACGGTAGCCTTAGGCCGGACGGGAGCGCAATATTGTTCAGAGAACGAGA
CTGCTGGGTTAGGGGGGGCGAGGGTCCAAAGATGGTGCTGTTTGGAGCAT
ACCACACTGCGGAGCGCTTCTTCGATGACGACAGGCTAACCTCGCATTTT
CCTGGACCGGGTTCGTACTCATTTAAGTCTACGGTCGAGGGAGTCCCAAC
GTCACGGCGGTACGCAAGTCCACTCGTGGAGGACGGTAGCCTTAGGCCGG
ACGGGAGCGCAATATTGTTCAGAGAACGAGACTGCTGGGTTAGGGGGGGC
GAGGGTCCAAAGGGACTCACGAGCTTGTCTGCCGGCAATGCTTTCGTCAG
CCCGGCGACGTACACCACACAGCCTGGGGAGCGCGCCGTCAAGGAAAAGG
GACTCACGAGCTTGTCTGCCGGCAATGCTTTCGTCAGCCCGGCGACGTAC
ACCACACAGCCTGGGGAGCGCGCCGTCAAGGAAAAGGCACCTGCCGCAGT
CGTCAACACCCTCGAGAGTCGGTACCTCAGCCCGTCAACACGATGCCTCA
CACCAAGCCACGAACGAGAAGCCAAAGGGGCACAGAGTCCCGGCCCGGGG
ATATATTACCCCCATGAGGCGTGGGATTTCGGGTCACCCAAGGATTGGAA
CCGAGTTAACAAGTCCGACAAACCGGGCCGGATGCCAAGCAGTAGGAGTT
TCAACACCAAGATGACTTGGGGCGAGGCAACCATGCCGCGTCCGCCTAAC
CCGGCGAAAGCAGCACAGATCCCGACGAAGGAGGAGCGGGCGTGGCTGTC
GAAAAGGCGGGGGTCGGCTCGCCCCAGCACAGCCCCACGATGTATGTGGC
ACCTGCCGCAGTCGTCAACACCCTCGAGAGTCGGTACCTCAGCCCGTCAA
CACGATGCCTCACACCAAGCCACGAACGAGAAGCCAAAGGGGCACAGAGT
CCCGGCCCGGGGATATATTACCCCCATGAGGCGTGGGATTTCGGGTCACC
CAAGGATTGGAACCGAGTTAACAAGTCCGACAAACCGGGCCGGATGCCAA
GCAGTAGGAGTTTCAACACCAAGATGACTTGGGGCGAGGCAACCATGCCG
CGTCCGCCTAACCCGGCGAAAGCAGCACAGATCCCGACGAAGGAGGAGCG
GGCGTGGCTGTCGAAAAGGCGGGGGTCGGCTCGCCCCAGCACAGCCCCAC
GATGTATGTGGTTGAACGGCGTGAGCACGCGAGGGGGGCTCCAGGCGTGG
GGCGACGTTGCCACGAACACCGGGCCAATACACGTGGGGAACAAGGGCAA
CTGTGCATCACCTTGGGACCGACCAACCCCTCGCCGAGGACCCGACTCAC
AACGTCGAGGCCCGATACACTCGCGCGAGGCACGGGCAACATCGCCTGGT
TTCCGCGAAACGCGTTACCTGAACCGCGACCTAACTCGGAAAGGAGCATG
TAGAGCAACAGACACGCCAGGCCCCGGGCAGTACAGCGTCCGTCCTCCGT
TAGAGCGCGGGACCAGTTTCGCCGGCCCCAGGCGTCAAAGCAAGTGCAGC
AAGGCTGTGACGGTGAACGCTTTGGTGGCATCTGCAAAAGGCCGGGCGGC
ATCAGACGAAAAGACTATTACCGGGGCGAAGAACGGAATGGCACGGCGAG
GAGGAGACCGGCAATCACGACCACGACCGTCGACGGCCGCGCCATCGCAG
CGTCTTTCGTTGCCGCTCAAAGGGCGAGAGAGCCCTGGCCCGGCGTACGC
TTTACCGAGCGATTTCGACCAGAAGGTCGTAAACAAGAAGACCTTCCACC
CCCCGCGGTGCAGCGAATCGTCGCCGTTCGGGACGGAGAAGTCTAGAGAA
ACAGGGCGGAGTGCAAGAAATTGTCCACACGCTGACGACAACGGAACCGT
TGGCGTGAAGAAGACAAAGCGTCTGCCGAAAGCTCGGCGGGAGGCATCCG
GATCTGTGGCGAAGTCGGGGAGGGCTGTCCTCGCTATCGGTAGGGCTTTG
GGAGTTCCTGTCAAGACGTGCATGGGGAGGGGCATCCTCTTGCGAATTCG
TGCCGATGGCATGACGTTCGTAAGGTTGCCTTGGGGCGTGTTATACACTA
CGGAGGTGCTGACCCATGGAGACAACCCTTATGTTGAACGGCGTGAGCAC
GCGAGGGGGGCTCCAGGCGTGGGGCGACGTTGCCACGAACACCGGGCCAA
TACACGTGGGGAACAAGGGCAACTGTGCATCACCTTGGGACCGACCAACC
CCTCGCCGAGGACCCGACTCACAACGTCGAGGCCCGATACACTCGCGCGA
GGCACGGGCAACATCGCCTGGTTTCCGCGAAACGCGTTACCTGAACCGCG
ACCTAACTCGGAAAGGAGCATGTAGAGCAACAGACACGCCAGGCCCCGGG
CAGTACAGCGTCCGTCCTCCGTTAGAGCGCGGGACCAGTTTCGCCGGCCC
CAGGCGTCAAAGCAAGTGCAGCAAGGCTGTGACGGTGAACGCTTTGGTGG
CATCTGCAAAAGGCCGGGCGGCATCAGACGAAAAGACTATTACCGGGGCG
AAGAACGGAATGGCACGGCGAGGAGGAGACCGGCAATCACGACCACGACC
GTCGACGGCCGCGCCATCGCAGCGTCTTTCGTTGCCGCTCAAAGGGCGAG
AGAGCCCTGGCCCGGCGTACGCTTTACCGAGCGATTTCGACCAGAAGGTC
GTAAACAAGAAGACCTTCCACCCCCCGCGGTGCAGCGAATCGTCGCCGTT
CGGGACGGAGAAGTCTAGAGAAACAGGGCGGAGTGCAAGAAATTGTCCAC
ACGCTGACGACAACGGAACCGTTGGCGTGAAGAAGACAAAGCGTCTGCCG
AAAGCTCGGCGGGAGGCATCCGGATCTGTGGCGAAGTCGGGGAGGGCTGT
CCTCGCTATCGGTAGGGCTTTGGGAGTTCCTGTCAAGACGTGCATGGGGA
GGGGCATCCTCTTGCGAATTCGTGCCGATGGCATGACGTTCGTAAGGTTG
CCTTGGGGCGTGTTATACACTACGGAGGTGCTGACCCATGGAGACAACCC
TTAT
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