mRNA_E-fasciculatus_F_contig13785.2788.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13785.2788.1
Unique NamemRNA_E-fasciculatus_F_contig13785.2788.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13785.2788.1 vs. uniprot
Match: D7G007_ECTSI (BZIP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G007_ECTSI)

HSP 1 Score: 219 bits (559), Expect = 3.620e-67
Identity = 122/133 (91.73%), Postives = 126/133 (94.74%), Query Frame = 1 
Query:   49 QLLVPGMLKASFSTKSNRLCSVQFSFDPTVPARQLARAAMLQGRATPGMAGMMAGMLGMGGVDVSSLMGAKGGGVPIAARDRASETSAASXXXXXXPANPPSFVGQDEGVLHSVLQDIREWRVSSTVVDDPSQ 447
            +LLVPGMLKASFSTKSNRLCSVQFSFDPTVPARQLARAAMLQGRATPGMAGMMAGMLGMGGVDVSSLM AKGGGVP AARDRASE+S A XXXXX  ANPP FVGQDEGVLHSVLQDIREWRVSSTV+DDP+Q
Sbjct:  310 ELLVPGMLKASFSTKSNRLCSVQFSFDPTVPARQLARAAMLQGRATPGMAGMMAGMLGMGGVDVSSLMAAKGGGVPSAARDRASESSGAXXXXXXTAANPPPFVGQDEGVLHSVLQDIREWRVSSTVLDDPNQ 442
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13785.2788.1 vs. uniprot
Match: A0A6H5KRD8_9PHAE (BZIP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRD8_9PHAE)

HSP 1 Score: 175 bits (444), Expect = 7.160e-49
Identity = 93/97 (95.88%), Postives = 94/97 (96.91%), Query Frame = 1 
Query:    1 MGLNQAFMCPFLARSPQLLVPGMLKASFSTKSNRLCSVQFSFDPTVPARQLARAAMLQGRATPGMAGMMAGMLGMGGVDVSSLMGAKGGGVPIAARD 291
            MGLNQAFMCPFLARSPQLLVPGMLKASFSTKSNRLCSVQFSFDPTVPARQLARAAMLQGRATPGMAGMMAGMLGMGGVDVSSLM AKGGGVP A R+
Sbjct:  518 MGLNQAFMCPFLARSPQLLVPGMLKASFSTKSNRLCSVQFSFDPTVPARQLARAAMLQGRATPGMAGMMAGMLGMGGVDVSSLMAAKGGGVPGAVRE 614
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13785.2788.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G007_ECTSI3.620e-6791.73BZIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KRD8_9PHAE7.160e-4995.88BZIP domain-containing protein n=1 Tax=Ectocarpus ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13785contigE-fasciculatus_F_contig13785:205..2585 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score223.8
Seed ortholog evalue5.8e-56
Seed eggNOG ortholog2880.D7G007
EggNOG OGs2EF6K@1,2SKEU@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-22_003405.1
Exons3
Model size480
Cds size480
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13785.2788.1prot_E-fasciculatus_F_contig13785.2788.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13785 205..2585 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927870.33937-CDS-E-fasciculatus_F_contig13785:204..2451622927870.33937-CDS-E-fasciculatus_F_contig13785:204..245Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13785 205..245 +
1695995731.7852933-CDS-E-fasciculatus_F_contig13785:204..2451695995731.7852933-CDS-E-fasciculatus_F_contig13785:204..245Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13785 205..245 +
1622927870.3537316-CDS-E-fasciculatus_F_contig13785:807..10561622927870.3537316-CDS-E-fasciculatus_F_contig13785:807..1056Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13785 808..1056 +
1695995731.7962475-CDS-E-fasciculatus_F_contig13785:807..10561695995731.7962475-CDS-E-fasciculatus_F_contig13785:807..1056Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13785 808..1056 +
1622927870.366549-CDS-E-fasciculatus_F_contig13785:2395..25851622927870.366549-CDS-E-fasciculatus_F_contig13785:2395..2585Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13785 2396..2585 +
1695995731.8040345-CDS-E-fasciculatus_F_contig13785:2395..25851695995731.8040345-CDS-E-fasciculatus_F_contig13785:2395..2585Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13785 2396..2585 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13785.2788.1

>prot_E-fasciculatus_F_contig13785.2788.1 ID=prot_E-fasciculatus_F_contig13785.2788.1|Name=mRNA_E-fasciculatus_F_contig13785.2788.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=160bp
MGLNQAFMCPFLARSPQLLVPGMLKASFSTKSNRLCSVQFSFDPTVPARQ
LARAAMLQGRATPGMAGMMAGMLGMGGVDVSSLMGAKGGGVPIAARDRAS
ETSAASASSGSNPANPPSFVGQDEGVLHSVLQDIREWRVSSTVVDDPSQG
EHRFAFCGW*
back to top

mRNA from alignment at E-fasciculatus_F_contig13785:205..2585+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13785.2788.1 ID=mRNA_E-fasciculatus_F_contig13785.2788.1|Name=mRNA_E-fasciculatus_F_contig13785.2788.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2381bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13785:205..2585+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGGCTGAACCAGGCCTTCATGTGTCCTTTCCTGGCGAGGTGCGCGGT
GGGATCGGTCCATTGGATGCATCTACACGGCTCTTGTCCCTCTGCTAAGG
AGTGTACTGTCGTAAAGGCCATCTCATATCTCATGCCTTATTCGTCAGAC
CGTAGACCTCGTATGCCCGGACGGAGCGATAGACATGCCGGGTTTTCGCC
GGCCCAGGTTTTACGTGTCACAAGGATTGGATGAACTAGAACCAGCAGCT
GATCTGTTCTTTCATCATCCATCATCCTTGCGTTCGCTGTGCCAATCTGG
CTAGATGATAGATATGCCATCTGCTTGTAGGGGGGGGGGCTCTTGCTGCG
GTGCTAAGGTGCTAAAGTAGTGCAGTAGGGCGGCGGTGGTTTCGCCTGCC
GATGCAAATGAAATTTTCCTTCCTACCCTTGCTGCAACCACCCAAAGCTC
TTTCAGCACGTGCCAAATACCCTGATACTATTGTCACCCCCCCCCCACCC
ACGCCCCCGCCCGTCGCGGTCACCCTCACTAATGATTTATGGCGTGATTG
TTGCTGCTGCCTTCGCCCCCTATGCATCACGACGATTGCGTCGCGTTGAC
CAGGTCTCCGCAGCTGCTGGTGCCCGGCATGCTCAAGGCGTCCTTCAGTA
CCAAGTCGAACCGCTTGTGCAGCGTGCAGTTCTCCTTCGACCCCACGGTC
CCTGCCAGGCAGCTGGCGCGCGCCGCCATGCTCCAGGGCCGCGCGACACC
GGGCATGGCCGGGATGATGGCGGGGATGCTCGGCATGGGAGGGGTGGACG
TGTCGTCCTTGATGGGGGCGAAGGGAGGAGGGGTACCCATCGCTGCCCGA
GAGTGAGCATGACTTGGCGTCTTTTTTGTTATTTTTTGTTCTTTCTTGTT
CTTTTTTGTTTTTGTTCTCGCAGATATTGCTGAGAGTGAGCATGGTTGCT
GTCTTTTTGGGTCTGCTCTTGCTGATGTTGCTGTCTTATTTATTTATTTT
TTAAATGCAACGAATAATCCATCTCTTCCACAGCAGATGAAAATCCGTGA
TAGTTGAGCAATGAAGTTGTATAGTGTTGTACGGTGACCACCTTTTGTTT
TTTTCATCATGTGGCGTTTTATCCTCCGCGCTACCCTGGGCCGATACAGC
GGCTCCCCAGCGGCTCCCCCTGGCCGCTATCGTGTAAACTGTAGATGGCG
ACATTGAAGGCCGCGTTATGGTTATTCGGCAGTGCGTCGTGTTTTGCCGA
CCCTTCCATAGTATATAACCGAGTTATCGTGGTGACCAAGCTATCTTATC
CCCAAGTAAAGAAGTTCAAGGAATATTGTACAATAAAAATAAGTCCCTCA
CGACAGCAGTCAATCCCCGCCATGGCTTCCGAAGAAAGAAACGACATTAA
CGACGGCATTTTTTTTTCAAGGACTCGACTCGAGACCTAAATGGTGGTGT
TGTTGGTGTCGGAGCCCCTCACCGTGTCGGTAGTCTGTACCGTACCGTAC
CGTACCGTACCGTGGGTGGCACCGGATACCACGCCCCCTGGACCGGTTTC
CAAGGCTCGATTACCTTGCTCCACAACAGTAGAAAGAAAGAGTGGCGGTG
CCGAAAATGTTAAATGTTGGCGTTGGAGCCGTATTTTCGAGATATTTCCG
AAAACAAAACAAGAAATTTGATTTTGACATCCTCTTGGTCGTGGGTGTAG
CCGACCTAGATTGCCTTGAAAATCGGTCCAGGGGGTGTGGTATCTTGTGT
CATGCCATGCCATGTCATGTCGACTACGGTATCCAGACGGTTGTTGTACG
GGATATACGTATTGTATGGAAGCGCCTCACCCTAAAGGTTTGGCTGATCT
CGCGCGTGTCCCGCTTGTGCCGCTGTTTTCATGGTGTCCATCCAGCGCGT
GTCGCGGTTGCGCCGCAAGGCTGTCGTGCTTTGGTTCTCGGTGCTTCGGG
CAGGAAACAAAAAACACTGGCGAGATTCGATTCCTTGTTCTTGCTCGCTT
GTGCGATCGATCCGACCCTTCCCCTCACGTTGGTCCTTCCTGATACCTCC
CTCCCTCTACCGCCGTCGATTAGCATGGTTAATTTTCCTCGCTTGTGTGA
TGGGCCCTCCCCTCCCCTCACGTTCCGTCCTGATCTGTCTTCCTCCCTGT
ACCGCCATGCTGCTTTTCGTCGTCTGTTTTTTCATCAGCAGCCGCGCTTC
CGAAACGTCGGCCGCGAGCGCAAGCTCGGGAAGCAACCCGGCGAATCCAC
CGTCCTTCGTGGGACAGGACGAAGGCGTGCTGCACTCGGTCCTGCAGGAC
ATTCGCGAGTGGAGAGTCAGCTCGACAGTCGTGGATGATCCAAGCCAAGG
TGAACATCGTTTTGCGTTTTGTGGCTGGTGA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13785:205..2585+

>mRNA_E-fasciculatus_F_contig13785.2788.1 ID=mRNA_E-fasciculatus_F_contig13785.2788.1|Name=mRNA_E-fasciculatus_F_contig13785.2788.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=960bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13785:205..2585+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGGCTGAACCAGGCCTTCATGTGTCCTTTCCTGGCGAGATGGGGCTG
AACCAGGCCTTCATGTGTCCTTTCCTGGCGAGGTCTCCGCAGCTGCTGGT
GCCCGGCATGCTCAAGGCGTCCTTCAGTACCAAGTCGAACCGCTTGTGCA
GCGTGCAGTTCTCCTTCGACCCCACGGTCCCTGCCAGGCAGCTGGCGCGC
GCCGCCATGCTCCAGGGCCGCGCGACACCGGGCATGGCCGGGATGATGGC
GGGGATGCTCGGCATGGGAGGGGTGGACGTGTCGTCCTTGATGGGGGCGA
AGGGAGGAGGGGTACCCATCGCTGCCCGAGAGTCTCCGCAGCTGCTGGTG
CCCGGCATGCTCAAGGCGTCCTTCAGTACCAAGTCGAACCGCTTGTGCAG
CGTGCAGTTCTCCTTCGACCCCACGGTCCCTGCCAGGCAGCTGGCGCGCG
CCGCCATGCTCCAGGGCCGCGCGACACCGGGCATGGCCGGGATGATGGCG
GGGATGCTCGGCATGGGAGGGGTGGACGTGTCGTCCTTGATGGGGGCGAA
GGGAGGAGGGGTACCCATCGCTGCCCGAGACCGCGCTTCCGAAACGTCGG
CCGCGAGCGCAAGCTCGGGAAGCAACCCGGCGAATCCACCGTCCTTCGTG
GGACAGGACGAAGGCGTGCTGCACTCGGTCCTGCAGGACATTCGCGAGTG
GAGAGTCAGCTCGACAGTCGTGGATGATCCAAGCCAAGGTGAACATCGTT
TTGCGTTTTGTGGCTGGTGACCGCGCTTCCGAAACGTCGGCCGCGAGCGC
AAGCTCGGGAAGCAACCCGGCGAATCCACCGTCCTTCGTGGGACAGGACG
AAGGCGTGCTGCACTCGGTCCTGCAGGACATTCGCGAGTGGAGAGTCAGC
TCGACAGTCGTGGATGATCCAAGCCAAGGTGAACATCGTTTTGCGTTTTG
TGGCTGGTGA
back to top