mRNA_E-fasciculatus_F_contig13781.2787.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13781.2787.1
Unique NamemRNA_E-fasciculatus_F_contig13781.2787.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13781.2787.1 vs. uniprot
Match: A0A6H5JEE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEE0_9PHAE)

HSP 1 Score: 327 bits (838), Expect = 2.530e-109
Identity = 179/207 (86.47%), Postives = 187/207 (90.34%), Query Frame = 1 
Query:    1 AGKVHGDRRAAAALEPQAGAGAGAAGGATFDPQQYRQQQQAQQGYALQEPWDKKNKNSHDQGNDSRDKEGPTGVAMGGPGMVSEGVPGSPPPPRTPLQEQAYQNMYRNQRTQLPGQAVGTQQPSSTLFRRSGAGGVFFIFLVMVCRSLNHYEYAEQMAGALRAMSMVPAVGLFLGNLVCMCLSLVESATNKQKARMKTMLTVDAVCE 621
            AG V  DRRAAA LEPQAGAG GA GGA FDPQ+YRQQQ AQ+ YALQEPWD  N NSHDQGND+RD+EG TG AMG P MVSEG P S PPPRTPLQE A+QNMYRNQRTQLPGQAVGTQQPSSTLFRRSGAGGVFFIFLVMVCRSLNHYEYAEQMAGALRAMS+VPAVGLFLGNLVCMCLSLVESATN+QKARMKTML+VDAVCE
Sbjct:  129 AGTVQADRRAAA-LEPQAGAGGGA-GGAAFDPQRYRQQQ-AQRRYALQEPWDSSN-NSHDQGNDNRDEEGATGAAMGVPEMVSEGAPASTPPPRTPLQEHAFQNMYRNQRTQLPGQAVGTQQPSSTLFRRSGAGGVFFIFLVMVCRSLNHYEYAEQMAGALRAMSLVPAVGLFLGNLVCMCLSLVESATNRQKARMKTMLSVDAVCE 331
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BLAST of mRNA_E-fasciculatus_F_contig13781.2787.1 vs. uniprot
Match: D7FSA4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSA4_ECTSI)

HSP 1 Score: 259 bits (662), Expect = 1.870e-85
Identity = 131/132 (99.24%), Postives = 131/132 (99.24%), Query Frame = 1 
Query:  226 MGGPGMVSEGVPGSPPPPRTPLQEQAYQNMYRNQRTQLPGQAVGTQQPSSTLFRRSGAGGVFFIFLVMVCRSLNHYEYAEQMAGALRAMSMVPAVGLFLGNLVCMCLSLVESATNKQKARMKTMLTVDAVCE 621
            MGGPGMVSEGVPGS PPPRTPLQEQAYQNMYRNQRTQLPGQAVGTQQPSSTLFRRSGAGGVFFIFLVMVCRSLNHYEYAEQMAGALRAMSMVPAVGLFLGNLVCMCLSLVESATNKQKARMKTMLTVDAVCE
Sbjct:    1 MGGPGMVSEGVPGSTPPPRTPLQEQAYQNMYRNQRTQLPGQAVGTQQPSSTLFRRSGAGGVFFIFLVMVCRSLNHYEYAEQMAGALRAMSMVPAVGLFLGNLVCMCLSLVESATNKQKARMKTMLTVDAVCE 132
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13781.2787.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JEE0_9PHAE2.530e-10986.47Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSA4_ECTSI1.870e-8599.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13781contigE-fasciculatus_F_contig13781:76..3522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score258.1
Seed ortholog evalue3.6e-66
Seed eggNOG ortholog2880.D7FSA4
EggNOG OGs2E9MT@1,2SFZ0@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-05_004780.1
Exons4
Model size621
Cds size621
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13781.2787.1prot_E-fasciculatus_F_contig13781.2787.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13781 76..3522 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927870.2332463-CDS-E-fasciculatus_F_contig13781:75..2111622927870.2332463-CDS-E-fasciculatus_F_contig13781:75..211Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13781 76..211 -
1695995731.742625-CDS-E-fasciculatus_F_contig13781:75..2111695995731.742625-CDS-E-fasciculatus_F_contig13781:75..211Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13781 76..211 -
1622927870.2543683-CDS-E-fasciculatus_F_contig13781:1436..15851622927870.2543683-CDS-E-fasciculatus_F_contig13781:1436..1585Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13781 1437..1585 -
1695995731.7550795-CDS-E-fasciculatus_F_contig13781:1436..15851695995731.7550795-CDS-E-fasciculatus_F_contig13781:1436..1585Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13781 1437..1585 -
1622927870.2690523-CDS-E-fasciculatus_F_contig13781:2600..27911622927870.2690523-CDS-E-fasciculatus_F_contig13781:2600..2791Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13781 2601..2791 -
1695995731.7654133-CDS-E-fasciculatus_F_contig13781:2600..27911695995731.7654133-CDS-E-fasciculatus_F_contig13781:2600..2791Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13781 2601..2791 -
1622927870.286457-CDS-E-fasciculatus_F_contig13781:3377..35221622927870.286457-CDS-E-fasciculatus_F_contig13781:3377..3522Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13781 3378..3522 -
1695995731.7752066-CDS-E-fasciculatus_F_contig13781:3377..35221695995731.7752066-CDS-E-fasciculatus_F_contig13781:3377..3522Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13781 3378..3522 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13781.2787.1

>prot_E-fasciculatus_F_contig13781.2787.1 ID=prot_E-fasciculatus_F_contig13781.2787.1|Name=mRNA_E-fasciculatus_F_contig13781.2787.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=207bp
AGKVHGDRRAAAALEPQAGAGAGAAGGATFDPQQYRQQQQAQQGYALQEP
WDKKNKNSHDQGNDSRDKEGPTGVAMGGPGMVSEGVPGSPPPPRTPLQEQ
AYQNMYRNQRTQLPGQAVGTQQPSSTLFRRSGAGGVFFIFLVMVCRSLNH
YEYAEQMAGALRAMSMVPAVGLFLGNLVCMCLSLVESATNKQKARMKTML
TVDAVCE
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mRNA from alignment at E-fasciculatus_F_contig13781:76..3522-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13781.2787.1 ID=mRNA_E-fasciculatus_F_contig13781.2787.1|Name=mRNA_E-fasciculatus_F_contig13781.2787.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3447bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13781:76..3522- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGGGGAAGGTGCATGGGGACAGGCGCGCGGCGGCGGCGCTGGAGCCCCA
GGCAGGGGCCGGGGCGGGGGCGGCAGGGGGGGCTACGTTCGATCCTCAGC
AGTATCGACAGCAGCAGCAAGCGCAGCAAGGGTACGCCTTGCAAGGTGAG
CACGACGAGCAGGGGGGTTGGATGTCGGCTCCCGGCGGGGGAGCTGAAGA
GCAGTACATACTCATGTTAACGCATGCCGTCGTCGTTGGACCGTTGACCT
CGCATCCCTACAGAGGCGGGACATGGGGGCGGGGGGGGGGGATTTCCTGG
ACTCTTTCAGGGTCCTGCAATAGTCGGGACCGACATGTAATCCGTGGAGA
ATCCTCCTATCGGGCTGGCGTCTCGTCATGCGCATCGTTCGTAGTTTTTG
TGTGATATCTGGGCGGAGAAGGGACTTGATCCCAAGGGTTTTTGTGAGTT
TTTATGCTACTACGAAGAGAGATAGATGAGAGATGCGAGGGGTCTCTCTC
CCCCACATGACATGTCCTCGGCAATTAGTTCGTGTTGACGTGGGGTTGGG
GGTGGTGGGTGTTGTCCTCGTGTAGTCACCTATTTCCCGCTCCGCTTACA
CCACTTTACGGGGCGTTTTTCGAATGCCTGCCCCTCATAATCTAAACATA
TTTGCTTACTTGTTGTTATTTGCCCGACACACTGCACTCTCCGCGCGGCA
ACTAATATCACGTCGCTGTCACACTCTCCAGAGCCGTGGGACAAGAAGAA
CAAGAACAGCCACGACCAAGGCAACGACAGTAGGGACAAGGAAGGGCCGA
CCGGGGTGGCAATGGGGGGCCCGGGAATGGTATCGGAGGGGGTGCCGGGG
TCACCACCCCCCCCTAGAACCCCCCTGCAGGAGCAGGCGTACCAGAATAT
GTACCGGAATCAGCGCACCCAGGTGCGCATTGTTGACACAAAAAATTTCC
TGCTTACAGCTGTACAGCGCACTGTTGGCACGAAAAACCTTCAGCTACAA
ATACAGCAGTACCGCAGTAGTGTGTATGGTTTTGTCTAGGCCAGCTTACG
TTTTTTTTTTTGCGAGAAAGGAAACCAGGAACTCGATAATCGCACGAACT
GCCGCTGGCGCCAACTGTGAGACGGGAGTCTCCAGGTTCGCGTGCGACAA
GTTCCTTTCGGGGATGTGTGGTGTGGAGACACACCGGTTCAACCGCTCAT
GGAGAAGCTGAAGGTCGTACGGATTGAGTTGTATGCCATGTGGGCCAGGA
ATAATGCAGTTGCACCAAGGTTCAGCGTCCACTGACTCTATTCTGTTTGA
CAACAAACCCCGAAGGTGGATCTCCGACGGGTAATCTGACCTCACAAGCT
ACGACACTTCTGAGGTGCCATTCACCTTTTTCCGTTTTTGATATTGGAAG
GAGGAGTGAGGAAACCCCAAGTTTACGGACAGGTTTTGGTGTTTGTCGCT
TCGAAGAGCTGTTATGCTAGGAAGGGGTGTGGTGAATAAATCTTGACAGC
TGTTAGGGGTCGAGCGCCAGACACCTGCTGGATGATACAATTGTACTGGA
CTAATCTCGTTATCGTCGGAGAGTTTGGTGTATGTTCTGGTTGTGGAGGA
GTTGGCTAGCACCACCTTGGCCCGCCGTCCGTGCGAAAGAGTGGTGTCAC
GAACGAGGAGGTTTCCTTGCCATCTGCCACGTACAGCAGTAGATGGCCCG
TGTGTTTTTCAAGAAAAGACAAATGCCGTCACATGCATACTATAATACGA
CAACAAACAATCGACCATGTTTTTTCAAAATAATAATACTTTTAAACTAA
AATCCCATGCATACGTCGACAACAATCGACCATGTTTTACATAACAAGCC
TTTTTTTGCGATCAATTGTCACATGCATGCGACAACGGCCATGTTGAAAA
TATGTGAGCATTTTTTTTTTTTCCTTGTTACCGTCAGCTTCCCGGGCAAG
CGGTGGGGACACAGCAGCCCTCGTCGACCCTCTTTCGGAGGTCCGGGGCC
GGAGGCGTTTTCTTCATTTTCCTCGTCATGGTGTGCAGGTCCCTGAACCA
CTACGAGTACGCCGAGCAGATGGCGGGGGCCCTCAGGTAGGTGTGGGGCG
GGCGAGTGTTGCGCTGCCAAAAGAAAATAAAACTAAAAAACAATCCACCA
TCTGTGCCTCTAGGCGCACACAGCAGCCAGTGAGTGGAGTGGTGAAATAC
TTTGCCTTTAGGCATGTGTGTTTGTGTGTTTTCGTCCTATATAATGGCGA
CAGTCCCCCCTTTTTCCGTGGTGAGAAGTGTACTAATATATGTAGAGTAC
TACACTTTTCAGTGTAATTTTTCGTACAACTACAACCATGTATTAATAAG
AAAACGTTCCCTTTGCCTGTAGGCGACAAGCAGTGAGTGGTGAAATTTGC
CTATCATCTCCCCGTCCCCGTGTGGGGTGTTGAGGTGGAATTGGTTTTGG
TCGTGACACGCATTCTGACGGCGATTTAAATCTATGAAGGTGGAGGTTCA
GGGAGGTATATACGTGTGTGAGGAGTGCCGACGGGCAAACCCGCGCTGCA
GGCGGCAACATGACAGCAAACAAATCAGACGATGTAGGATAGGTACCGTG
GGTGACATGACACAAGATACCACACCCCCTGGACCGATTTCTAAAGCTCG
ATTACTCCACAGTAGAAAGACTGTTGGCGCCTGAAATGGCGGCGTTGCAA
CCGTCTCTCATGGAGGTCTTTGCGAAAACATATCGTTGATGTTGGTATCC
TCTTCGTACAATAGAGTGGCCGAGCTTTGAAAATCGGTCCAGGGGGTAGC
TTGTGCCCCCCACGGTAGTCTAGTGAACAACGTTTTGGAGCCACCTTTGA
CAATGAAGGAGGGACGATTGACCATCATCGGTGATCGGTCCTGTGGGAAC
AACGCTCCGTCCTCTCGAGGACGCATGGTCAATGATCCTAACCGCCAAGG
CATGCGAAAAACATGAGAGTACGACCCCCCCCCTGGCTTTGTAGGGATGC
GAGATCAATGGTCTAGCGGATACGGCATGCATATGAGTACCCCCCCCCTC
CCTCCGCCCAACAAACACAGTTTTCCGATCTCTCCGCCTTTAGCGACACC
AAGCAGTCAAGAACCTTTAGTTCGTGCTGCGACTCCCTTTTTCTTTTTTA
TAAATAGACATTCTAACACAAAAAACTCCCCGTTCGACATATAACCACAG
TAGTGGAAAGGGATGTGCGTAAGTATTTTCAGTGAGTGGAGGGAAACCAG
CTGGAAATTTAGTGTTTTTTGTTATTGTTTTCATCCTTTCTTGTGTTTTT
TCACGTCTCAGGGCCATGTCCATGGTGCCAGCCGTGGGCCTGTTCTTGGG
GAACCTGGTGTGTATGTGCCTCTCGCTGGTGGAGTCGGCCACCAACAAGC
AGAAGGCCAGGATGAAGACGATGCTCACCGTCGACGCCGTGTGCGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13781:76..3522-

>mRNA_E-fasciculatus_F_contig13781.2787.1 ID=mRNA_E-fasciculatus_F_contig13781.2787.1|Name=mRNA_E-fasciculatus_F_contig13781.2787.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1242bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13781:76..3522- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCGGGGAAGGTGCATGGGGACAGGCGCGCGGCGGCGGCGCTGGAGCCCCA
GGCAGGGGCCGGGGCGGGGGCGGCAGGGGGGGCTACGTTCGATCCTCAGC
AGTATCGACAGCAGCAGCAAGCGCAGCAAGGGTACGCCTTGCAAGGCGGG
GAAGGTGCATGGGGACAGGCGCGCGGCGGCGGCGCTGGAGCCCCAGGCAG
GGGCCGGGGCGGGGGCGGCAGGGGGGGCTACGTTCGATCCTCAGCAGTAT
CGACAGCAGCAGCAAGCGCAGCAAGGGTACGCCTTGCAAGAGCCGTGGGA
CAAGAAGAACAAGAACAGCCACGACCAAGGCAACGACAGTAGGGACAAGG
AAGGGCCGACCGGGGTGGCAATGGGGGGCCCGGGAATGGTATCGGAGGGG
GTGCCGGGGTCACCACCCCCCCCTAGAACCCCCCTGCAGGAGCAGGCGTA
CCAGAATATGTACCGGAATCAGCGCACCCAGAGCCGTGGGACAAGAAGAA
CAAGAACAGCCACGACCAAGGCAACGACAGTAGGGACAAGGAAGGGCCGA
CCGGGGTGGCAATGGGGGGCCCGGGAATGGTATCGGAGGGGGTGCCGGGG
TCACCACCCCCCCCTAGAACCCCCCTGCAGGAGCAGGCGTACCAGAATAT
GTACCGGAATCAGCGCACCCAGCTTCCCGGGCAAGCGGTGGGGACACAGC
AGCCCTCGTCGACCCTCTTTCGGAGGTCCGGGGCCGGAGGCGTTTTCTTC
ATTTTCCTCGTCATGGTGTGCAGGTCCCTGAACCACTACGAGTACGCCGA
GCAGATGGCGGGGGCCCTCAGCTTCCCGGGCAAGCGGTGGGGACACAGCA
GCCCTCGTCGACCCTCTTTCGGAGGTCCGGGGCCGGAGGCGTTTTCTTCA
TTTTCCTCGTCATGGTGTGCAGGTCCCTGAACCACTACGAGTACGCCGAG
CAGATGGCGGGGGCCCTCAGGGCCATGTCCATGGTGCCAGCCGTGGGCCT
GTTCTTGGGGAACCTGGTGTGTATGTGCCTCTCGCTGGTGGAGTCGGCCA
CCAACAAGCAGAAGGCCAGGATGAAGACGATGCTCACCGTCGACGCCGTG
TGCGAGGGCCATGTCCATGGTGCCAGCCGTGGGCCTGTTCTTGGGGAACC
TGGTGTGTATGTGCCTCTCGCTGGTGGAGTCGGCCACCAACAAGCAGAAG
GCCAGGATGAAGACGATGCTCACCGTCGACGCCGTGTGCGAG
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