mRNA_E-fasciculatus_F_contig13779.2786.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13779.2786.1
Unique NamemRNA_E-fasciculatus_F_contig13779.2786.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13779.2786.1 vs. uniprot
Match: D7G478_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G478_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 4.290e-14
Identity = 34/43 (79.07%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:    1 QDVRKEDALLLASVGQDLFRTISSMINMEFKKEANNEMHYAKE 129
            QDVRKEDALLL SVGQDLFRTISSM + EF+K ANNE++ AKE
Sbjct:    2 QDVRKEDALLLGSVGQDLFRTISSMTSTEFRKRANNEINNAKE 44
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13779.2786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G478_ECTSI4.290e-1479.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13779contigE-fasciculatus_F_contig13779:2074..2229 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_001610.1
Exons1
Model size156
Cds size156
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927870.178063-CDS-E-fasciculatus_F_contig13779:2073..22291622927870.178063-CDS-E-fasciculatus_F_contig13779:2073..2229Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13779 2074..2229 +
1695995731.7323573-CDS-E-fasciculatus_F_contig13779:2073..22291695995731.7323573-CDS-E-fasciculatus_F_contig13779:2073..2229Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13779 2074..2229 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13779.2786.1prot_E-fasciculatus_F_contig13779.2786.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13779 2074..2229 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13779.2786.1

>prot_E-fasciculatus_F_contig13779.2786.1 ID=prot_E-fasciculatus_F_contig13779.2786.1|Name=mRNA_E-fasciculatus_F_contig13779.2786.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=52bp
QDVRKEDALLLASVGQDLFRTISSMINMEFKKEANNEMHYAKEWVRPAAV
S*
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mRNA from alignment at E-fasciculatus_F_contig13779:2074..2229+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13779.2786.1 ID=mRNA_E-fasciculatus_F_contig13779.2786.1|Name=mRNA_E-fasciculatus_F_contig13779.2786.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=156bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13779:2074..2229+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGACGTGCGGAAGGAGGACGCGCTCCTACTCGCATCCGTGGGGCAAGA
TCTCTTTCGCACGATCTCAAGCATGATCAACATGGAGTTTAAGAAAGAAG
CCAACAACGAGATGCACTATGCAAAGGAATGGGTACGGCCGGCAGCAGTG
TCATGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13779:2074..2229+

>mRNA_E-fasciculatus_F_contig13779.2786.1 ID=mRNA_E-fasciculatus_F_contig13779.2786.1|Name=mRNA_E-fasciculatus_F_contig13779.2786.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=312bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13779:2074..2229+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGACGTGCGGAAGGAGGACGCGCTCCTACTCGCATCCGTGGGGCAAGA
TCTCTTTCGCACGATCTCAAGCATGATCAACATGGAGTTTAAGAAAGAAG
CCAACAACGAGATGCACTATGCAAAGGAATGGGTACGGCCGGCAGCAGTG
TCATGACAGGACGTGCGGAAGGAGGACGCGCTCCTACTCGCATCCGTGGG
GCAAGATCTCTTTCGCACGATCTCAAGCATGATCAACATGGAGTTTAAGA
AAGAAGCCAACAACGAGATGCACTATGCAAAGGAATGGGTACGGCCGGCA
GCAGTGTCATGA
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