mRNA_E-fasciculatus_F_contig13777.2785.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13777.2785.1
Unique NamemRNA_E-fasciculatus_F_contig13777.2785.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13777.2785.1 vs. uniprot
Match: D8LFY5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFY5_ECTSI)

HSP 1 Score: 305 bits (780), Expect = 1.410e-97
Identity = 194/291 (66.67%), Postives = 198/291 (68.04%), Query Frame = 1 
Query:    1 FRRRKSKVDPLASSGSKGTAAAAAXXXXXXXDGNSPXXXXXXXXXXXXARRGLFRRRRSNGHNHHDGGAETRPLSRASSSAGV---VGLASSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSSSAHSGVRARASAEGGGLLSKSDHSRAGXXXXXXXXXXXXXXXXRESPRTSLYPAPQPLHRIRSSGADGMGLSQDPNFFPPIPLSEDGCSEKPSSRGEVRFGDFIRLWCYSTYADKAGYVGYLRRTSRKRNSVGKGELFVLPPVPASPYSDGRLHGRLGPSLFG 864
            FRRRKSKVDPL SSGSKG AAAAA       DGN P            ARRGLFRRRRSNG                         VGL+ S                                  S+SAHSGVRAR S EGGGLLSKSD SR G   XXXXXXXXXXXXX ESP +S+YPAPQPLHRIRSSG DGMGLSQDPNFFPPIPLSEDGCSEKPSSRGEVRFGDFIRLWCYS YADKAGYVGYLRRTSRKRNSVGKGELFVLPPVPASPYSDGRLHGRLGPSLFG
Sbjct:   68 FRRRKSKVDPLGSSGSKGNAAAAAADGSSPADGNRPAASLHVP-----ARRGLFRRRRSNGXXXXXXXXXXXXXXXXXXXXXXXXXVGLSLS---------------DTESRPRATIAVCGGGGISSTSAHSGVRARGSPEGGGLLSKSDLSRTGAGGXXXXXXXXXXXXX-ESPPSSVYPAPQPLHRIRSSGDDGMGLSQDPNFFPPIPLSEDGCSEKPSSRGEVRFGDFIRLWCYSNYADKAGYVGYLRRTSRKRNSVGKGELFVLPPVPASPYSDGRLHGRLGPSLFG 337
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BLAST of mRNA_E-fasciculatus_F_contig13777.2785.1 vs. uniprot
Match: A0A6H5K175_9PHAE (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K175_9PHAE)

HSP 1 Score: 254 bits (649), Expect = 2.150e-74
Identity = 185/317 (58.36%), Postives = 188/317 (59.31%), Query Frame = 1 
Query:   37 SSGSKGTAAAAAXXXXXXXDGNSPXXXXXXXXXXXXARRGLFRRRRSNGHNHHDGGAETRPLSRASSSAGVVGLASSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMSSSAHSGVRARASAEGGGLLSKSDHSRAGXXXXXXXXXXXXXXXXRESPRTSLYPAPQPLHRIRSSGADGMGLSQDPNFFPPIPLSEDGCSEKPSSRGEVRFGDFIRLWCYSTYADKAGYVGYLRRTSRKRNSVGKGELFVLPPVPASPYS-----------------------------------------DGRLHGRLGPSLFG 864
            SSGSKGTAAAA        DGN P             RRGLFRRRRSNGH                             XXXXXXXXXXXXXXXXXXXXX          +SSSAHSGVRAR S EG  LLSKSD S  G                RESP +S+YPAPQPLHRIRSS  DGMGLSQDPNFFPPIPLSEDGCSEKPSSRGEVRFGDFIRLWCYS YADKAGYVGYLRRTSRKRNSVGKGELFVLPPVPASPYS                                         DGRLHGRLGPSLFG
Sbjct:   79 SSGSKGTAAAA--DGSSPADGNRPAASLHVP-----GRRGLFRRRRSNGH-----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATISVCGGGGISSSAHSGVRARGSPEGSVLLSKSDLSSTGVGGGWVGALASGGGG-RESPPSSVYPAPQPLHRIRSSAGDGMGLSQDPNFFPPIPLSEDGCSEKPSSRGEVRFGDFIRLWCYSNYADKAGYVGYLRRTSRKRNSVGKGELFVLPPVPASPYSIFHECCFKIVDPHSEKEDGDVLHFGEEISLVDDRGMVWNNKDGRLHGRLGPSLFG 376
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13777.2785.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFY5_ECTSI1.410e-9766.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K175_9PHAE2.150e-7458.36CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13777contigE-fasciculatus_F_contig13777:13..2117 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size866
Cds size864
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13777.2785.1prot_E-fasciculatus_F_contig13777.2785.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13777 13..2115 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927870.0942554-CDS-E-fasciculatus_F_contig13777:12..6731622927870.0942554-CDS-E-fasciculatus_F_contig13777:12..673Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13777 13..673 +
1695995731.694391-CDS-E-fasciculatus_F_contig13777:12..6731695995731.694391-CDS-E-fasciculatus_F_contig13777:12..673Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13777 13..673 +
1622927870.1094697-CDS-E-fasciculatus_F_contig13777:1312..13711622927870.1094697-CDS-E-fasciculatus_F_contig13777:1312..1371Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13777 1313..1371 +
1695995731.7064645-CDS-E-fasciculatus_F_contig13777:1312..13711695995731.7064645-CDS-E-fasciculatus_F_contig13777:1312..1371Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13777 1313..1371 +
1622927870.1248689-CDS-E-fasciculatus_F_contig13777:1658..17601622927870.1248689-CDS-E-fasciculatus_F_contig13777:1658..1760Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13777 1659..1760 +
1695995731.7147503-CDS-E-fasciculatus_F_contig13777:1658..17601695995731.7147503-CDS-E-fasciculatus_F_contig13777:1658..1760Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13777 1659..1760 +
1622927870.1385472-CDS-E-fasciculatus_F_contig13777:2073..21151622927870.1385472-CDS-E-fasciculatus_F_contig13777:2073..2115Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13777 2074..2115 +
1695995731.723175-CDS-E-fasciculatus_F_contig13777:2073..21151695995731.723175-CDS-E-fasciculatus_F_contig13777:2073..2115Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13777 2074..2115 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13777.2785.1

>prot_E-fasciculatus_F_contig13777.2785.1 ID=prot_E-fasciculatus_F_contig13777.2785.1|Name=mRNA_E-fasciculatus_F_contig13777.2785.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=288bp
FRRRKSKVDPLASSGSKGTAAAAAAAAAAAADGNSPADGHKPAALHVPAR
RGLFRRRRSNGHNHHDGGAETRPLSRASSSAGVVGLASSGGGGGGGGAGI
SLSDTDSRPRATIAACGAGAGGMSSSAHSGVRARASAEGGGLLSKSDHSR
AGGAGGGGGGGTPPSGGGRESPRTSLYPAPQPLHRIRSSGADGMGLSQDP
NFFPPIPLSEDGCSEKPSSRGEVRFGDFIRLWCYSTYADKAGYVGYLRRT
SRKRNSVGKGELFVLPPVPASPYSDGRLHGRLGPSLFG
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mRNA from alignment at E-fasciculatus_F_contig13777:13..2117+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13777.2785.1 ID=mRNA_E-fasciculatus_F_contig13777.2785.1|Name=mRNA_E-fasciculatus_F_contig13777.2785.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2105bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13777:13..2117+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTCCGACGGAGGAAGTCCAAGGTGGACCCTCTAGCCTCCTCAGGTTCGAA
AGGAACGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGACGGCA
ACAGTCCCGCCGACGGCCACAAGCCGGCCGCCCTGCACGTTCCCGCGAGG
AGAGGCCTATTCCGCAGGCGGCGAAGCAACGGCCACAACCACCACGACGG
AGGAGCGGAAACCCGCCCCCTCTCGAGAGCCTCCTCCTCAGCTGGCGTCG
TAGGCCTGGCCTCCTCCGGCGGCGGCGGCGGTGGCGGTGGCGCAGGCATC
TCCCTCTCGGACACGGACTCCCGACCCCGCGCTACGATAGCGGCCTGCGG
CGCCGGCGCCGGCGGCATGAGCAGCAGCGCACATAGTGGTGTACGTGCCC
GCGCTAGTGCGGAAGGCGGTGGGCTGTTGAGCAAGAGCGATCATTCGAGG
GCAGGGGGGGCAGGAGGTGGAGGGGGGGGGGGTACACCCCCGAGCGGAGG
CGGCAGGGAGTCGCCGCGGACGTCTTTGTACCCGGCTCCGCAGCCGCTGC
ACCGTATCCGGTCCAGCGGGGCCGATGGGATGGGGCTGTCGCAGGATCCT
AACTTTTTCCCGCCGATTCCTCTGTCCGAGGACGGGTGCTCGGAGAAGCC
TAGCTCGAGAGGTGAATGGGAAGGGGGGGGCGAGGGGGCAGTCCGAAGGC
TTGCGTACGGCTGTGTGACAGATTTGTGGTATTTTGGTTCGTTGAGGTTA
CCTTCGAGTCAACAACACGTCGTCAGCTGTAAGGTTGCGAAAAGTCACAG
CTGGCAGCTAAATAGCAACCAGCCGTGGGCCTGTCCTGCCGCCTGCTTTT
TATTTTCATGTCGCGTCAGCCCTTGATTACACTGCTGCTCTTTCATGAGC
CCAGTCTATAGGGGTTCTAGTCAATCATGTGGGAAGTGCCTTATATTTTG
CCCCCCCCCCCCNNNNNNNNNNCCCCCGCCTCCCCTCTTGTGTTGCTGAT
GTTTTCCTCGCGTCGTCTACTTTACACCGCGTTATTTATCGCTTTTCTAG
TTGTCGGTACTGCCGAGCGCTGTACGAGTACGAACGCAGCCACAGGTGTC
TGATCGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAAAGATTGCTTGCT
CCACCACAACCAAGAGAGTGTCAATGCCCGGCACCTCCGGCTTAACAACC
TCGACATTTTGTGTCTTCGTGCTTTCTGTCTATCTCTCTCTGGGCCTGGT
TTCTAACATGTTCGCGTGTTCTTTTGTTGTCTTTGCTTTCGCGTGTCCAG
GGGAGGTTCGGTTTGGCGACTTTATCCGCTTGTGGTGCTACAGCACCTAC
GCAGACAAGGTGATGCTTGTTGTTGTGGAAGGGGAGGGTGGTACGAGACA
CGACGTGAGAGGGGGGGAGGGAGAGAGAGGATTTGGATGCTAGACGCTGT
TCAGATATGTTACAAAAAGCACGGCGTATTTTGTTGGGATGAAGCAGCAG
CCTTGCTTTTCCGCCTTCTTCCTAGCACACCAGTCATGCTCACTGAGCGT
TCAGTGTGCCTGCTTGCCCAAATACTCCTACTTACCCACCTATCGAAACG
TTAACGATTCCGTCTTCTTGCCGCCGTTCTCTGTCGGAGGCAACAGGCGG
GCTATGTGGGGTACCTCCGAAGGACCTCTAGAAAGCGAAACTCGGTCGGG
AAGGGGGAGCTCTTTGTCCTCCCTCCGGTGCCCGCCAGCCCTTACTCGGT
GAGGCTTTGCGGTAAACTCCGGGCAAAGCTTTTATGTCTTGGGGGAGGCA
AGCCTCTTTCGGGGATTTTTCTGGCATATTTACCCAAAAATCCCACGTAT
CCTTATGTCTAACCTACGGCGTGTTTCTCATCTCGCTCGGCGACGCGGCT
CTGTCATTCTCCTCTTGTTTTGTCTTTCGACCAATTAGATTTTTCACGAG
TGTTGCTTCAAGATCGTTGATCCTCACTCAGAGAAGGAGGACGGGGACGT
TCTCCACTTCGACGAAGAAGTATCTCTGGTGGACGACCGGGGGATGGTGT
GGAACAACAAGGACGGTCGCCTGCACGGGAGGCTCGGACCTTCTCTCTTT
GGCGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13777:13..2117+

>mRNA_E-fasciculatus_F_contig13777.2785.1 ID=mRNA_E-fasciculatus_F_contig13777.2785.1|Name=mRNA_E-fasciculatus_F_contig13777.2785.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1728bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13777:13..2117+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTCCGACGGAGGAAGTCCAAGGTGGACCCTCTAGCCTCCTCAGGTTCGAA
AGGAACGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGACGGCA
ACAGTCCCGCCGACGGCCACAAGCCGGCCGCCCTGCACGTTCCCGCGAGG
AGAGGCCTATTCCGCAGGCGGCGAAGCAACGGCCACAACCACCACGACGG
AGGAGCGGAAACCCGCCCCCTCTCGAGAGCCTCCTCCTCAGCTGGCGTCG
TAGGCCTGGCCTCCTCCGGCGGCGGCGGCGGTGGCGGTGGCGCAGGCATC
TCCCTCTCGGACACGGACTCCCGACCCCGCGCTACGATAGCGGCCTGCGG
CGCCGGCGCCGGCGGCATGAGCAGCAGCGCACATAGTGGTGTACGTGCCC
GCGCTAGTGCGGAAGGCGGTGGGCTGTTGAGCAAGAGCGATCATTCGAGG
GCAGGGGGGGCAGGAGGTGGAGGGGGGGGGGGTACACCCCCGAGCGGAGG
CGGCAGGGAGTCGCCGCGGACGTCTTTGTACCCGGCTCCGCAGCCGCTGC
ACCGTATCCGGTCCAGCGGGGCCGATGGGATGGGGCTGTCGCAGGATCCT
AACTTTTTCCCGCCGATTCCTCTGTCCGAGGACGGGTGCTCGGAGAAGCC
TAGCTCGAGAGTTCCGACGGAGGAAGTCCAAGGTGGACCCTCTAGCCTCC
TCAGGTTCGAAAGGAACGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGC
GGCAGACGGCAACAGTCCCGCCGACGGCCACAAGCCGGCCGCCCTGCACG
TTCCCGCGAGGAGAGGCCTATTCCGCAGGCGGCGAAGCAACGGCCACAAC
CACCACGACGGAGGAGCGGAAACCCGCCCCCTCTCGAGAGCCTCCTCCTC
AGCTGGCGTCGTAGGCCTGGCCTCCTCCGGCGGCGGCGGCGGTGGCGGTG
GCGCAGGCATCTCCCTCTCGGACACGGACTCCCGACCCCGCGCTACGATA
GCGGCCTGCGGCGCCGGCGCCGGCGGCATGAGCAGCAGCGCACATAGTGG
TGTACGTGCCCGCGCTAGTGCGGAAGGCGGTGGGCTGTTGAGCAAGAGCG
ATCATTCGAGGGCAGGGGGGGCAGGAGGTGGAGGGGGGGGGGGTACACCC
CCGAGCGGAGGCGGCAGGGAGTCGCCGCGGACGTCTTTGTACCCGGCTCC
GCAGCCGCTGCACCGTATCCGGTCCAGCGGGGCCGATGGGATGGGGCTGT
CGCAGGATCCTAACTTTTTCCCGCCGATTCCTCTGTCCGAGGACGGGTGC
TCGGAGAAGCCTAGCTCGAGAGGGGAGGTTCGGTTTGGCGACTTTATCCG
CTTGTGGTGCTACAGCACCTACGCAGACAAGGGGAGGTTCGGTTTGGCGA
CTTTATCCGCTTGTGGTGCTACAGCACCTACGCAGACAAGGCGGGCTATG
TGGGGTACCTCCGAAGGACCTCTAGAAAGCGAAACTCGGTCGGGAAGGGG
GAGCTCTTTGTCCTCCCTCCGGTGCCCGCCAGCCCTTACTCGGCGGGCTA
TGTGGGGTACCTCCGAAGGACCTCTAGAAAGCGAAACTCGGTCGGGAAGG
GGGAGCTCTTTGTCCTCCCTCCGGTGCCCGCCAGCCCTTACTCGGACGGT
CGCCTGCACGGGAGGCTCGGACCTTCTCTCTTTGGCGACGGTCGCCTGCA
CGGGAGGCTCGGACCTTCTCTCTTTGGC
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