mRNA_E-fasciculatus_F_contig13775.2784.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13775.2784.1
Unique NamemRNA_E-fasciculatus_F_contig13775.2784.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig13775.2784.1 vs. uniprot
Match: D7G250_ECTSI (AAA_23 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G250_ECTSI)

HSP 1 Score: 224 bits (570), Expect = 2.070e-69
Identity = 122/129 (94.57%), Postives = 125/129 (96.90%), Query Frame = 1
Query:    4 IPLRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESARYTKALDNIKKTKQEYAST--ELKVDLAALQERLRAANDLKEEMDASTETYNTIRKEIEAIDARTAELSESLEKLRAVADEVYFL 384
            IPLRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESARYTKALDNIKKTKQEYAST  ELKVDLAALQERLRAANDLKEEMDASTETY+T+R+EIEAIDARTAELSESLEKLRAVADEV  L
Sbjct:  140 IPLRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESARYTKALDNIKKTKQEYASTVKELKVDLAALQERLRAANDLKEEMDASTETYSTLRQEIEAIDARTAELSESLEKLRAVADEVRML 268          
BLAST of mRNA_E-fasciculatus_F_contig13775.2784.1 vs. uniprot
Match: A0A6H5L8V1_9PHAE (AAA_23 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8V1_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 1.630e-50
Identity = 101/130 (77.69%), Postives = 104/130 (80.00%), Query Frame = 1
Query:    1 QIPLRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESARYTKALDNIKKTKQEYAST--ELKVDLAALQERLRAANDLKEEMDASTETYNTIRKEIEAIDARTAELSESLEKLRAVADEVYFL 384
            QIPLRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESARYTKAL+NIKKTKQEYAS   ELKVDLAALQERLRAANDLKEEMDASTETY+ +R                    RAVADEV  L
Sbjct:   89 QIPLRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESARYTKALENIKKTKQEYASAVKELKVDLAALQERLRAANDLKEEMDASTETYSNLRXXXXXXXXXXXXXXXXXXXXRAVADEVRML 218          
BLAST of mRNA_E-fasciculatus_F_contig13775.2784.1 vs. uniprot
Match: A0A1E7F3C8_9STRA (AAA_23 domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F3C8_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.090e-26
Identity = 52/61 (85.25%), Postives = 55/61 (90.16%), Query Frame = 1
Query:    1 QIPLRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESARYTKALDNIKKTKQEY 183
            QIPL LGVSKAILENVVFCHQEDASWPLQEGAV+KKKFDDIF+S RYTKALD   K K+EY
Sbjct:  138 QIPLMLGVSKAILENVVFCHQEDASWPLQEGAVLKKKFDDIFDSTRYTKALDVFSKAKKEY 198          
BLAST of mRNA_E-fasciculatus_F_contig13775.2784.1 vs. uniprot
Match: A0A662WHK9_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WHK9_9STRA)

HSP 1 Score: 112 bits (280), Expect = 3.320e-26
Identity = 58/126 (46.03%), Postives = 90/126 (71.43%), Query Frame = 1
Query:    4 IPLRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESARYTKALDNIKKTKQEYA--STELKVDLAALQERLRAANDLKEEMDASTETYNTIRKEIEAIDARTAELSESLEKLRAVADEV 375
            IP  +GVSKAIL++V+FCHQE+A+WPLQEGAV+KK+FDDIFESARYTKAL+ I+K K+     + + K DLA L   ++ A +++++++A+ +T   + +E E      A+  E+LE++  +  E+
Sbjct:  140 IPDMMGVSKAILDSVIFCHQEEANWPLQEGAVLKKRFDDIFESARYTKALEAIRKLKKARNDDTKDYKRDLAVLTVNMKTAENIRDKIEAAEDTLRAVSEEREKAGDAVAQAQETLEEMERLQSEI 265          
BLAST of mRNA_E-fasciculatus_F_contig13775.2784.1 vs. uniprot
Match: A0A1V9ZB00_9STRA (DNA repair protein RAD50 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZB00_9STRA)

HSP 1 Score: 111 bits (278), Expect = 6.180e-26
Identity = 65/133 (48.87%), Postives = 89/133 (66.92%), Query Frame = 1
Query:    4 IPLRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESARYTKALDNIKKTKQEYAST--ELKVDLAALQERLRAANDLKEEMD-------ASTETYNTIRKEIEAIDARTAELSESLEKLRAVADEV 375
            IP  LGVSKA+LE+V+FCHQE+++WPLQEGAV+KK+FDDIFESARYTKAL+ IKK K+E  +   ++K DL  L E+++   D++E+++       A    Y T+  EI  + AR  E    L  +R VA  V
Sbjct:  140 IPDLLGVSKAVLESVIFCHQEESNWPLQEGAVLKKRFDDIFESARYTKALEAIKKLKKERLAMAKDMKRDLDVLGEQVKRVRDMEEQLETREAKLLALKADYETMSGEIGQLAARVTETDAELAHVRDVAAHV 272          
BLAST of mRNA_E-fasciculatus_F_contig13775.2784.1 vs. uniprot
Match: A0A024UCA2_9STRA (AAA_23 domain-containing protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UCA2_9STRA)

HSP 1 Score: 111 bits (277), Expect = 8.440e-26
Identity = 63/133 (47.37%), Postives = 89/133 (66.92%), Query Frame = 1
Query:    4 IPLRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESARYTKALDNIKKTKQEYAST--ELKVDLAALQERLRAANDLKEEMDASTETY-------NTIRKEIEAIDARTAELSESLEKLRAVADEV 375
            IP  LGVSKA+LE+V+FCHQED++WPLQEGAV+KK+FDDIFESARYTKAL+ IKK K + A+   +LK DL  + E+++ A +L+E++D             N I   I+ ++    E +  L + RA+  E+
Sbjct:  140 IPDLLGVSKAVLESVIFCHQEDSNWPLQEGAVLKKRFDDIFESARYTKALEAIKKLKADRANQGKDLKRDLDVINEQVKRARELEEQLDVRQSKLEALKLDENAISDNIDDLERHVVEANNVLAESRALNAEI 272          
BLAST of mRNA_E-fasciculatus_F_contig13775.2784.1 vs. uniprot
Match: B7FXY7_PHATC (RAD50 recombination protein n=7 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FXY7_PHATC)

HSP 1 Score: 110 bits (275), Expect = 1.570e-25
Identity = 58/127 (45.67%), Postives = 86/127 (67.72%), Query Frame = 1
Query:    1 QIPLRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESARYTKALDNIKKTKQEYAST--ELKVDLAALQERLRAANDLKEEMDASTETYNTIRKEIEAIDARTAELSESLEKLRAVADEV 375
            Q+P  LGVSK+ILE+VVFCHQEDASWPL EGAV+KK+FDDIF+S RYTKALD  +KT++E  +T  +LK++LA L     AA+  ++++    E   T+ +E + +    AE    ++  + +  ++
Sbjct:  161 QLPALLGVSKSILEHVVFCHQEDASWPLMEGAVLKKRFDDIFDSTRYTKALDAFRKTEKEMTATVKDLKIELAGLNSSKIAADGFRKDLVGYQEALETLEEEKQQVVEGIAEADRDIQVYQGIEAKI 287          
BLAST of mRNA_E-fasciculatus_F_contig13775.2784.1 vs. uniprot
Match: A0A8K1CBI4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CBI4_PYTOL)

HSP 1 Score: 109 bits (272), Expect = 3.980e-25
Identity = 56/126 (44.44%), Postives = 89/126 (70.63%), Query Frame = 1
Query:    4 IPLRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESARYTKALDNIKKTKQEYA--STELKVDLAALQERLRAANDLKEEMDASTETYNTIRKEIEAIDARTAELSESLEKLRAVADEV 375
            IP  LGVSKAILE+V+FCHQED++WPLQEGAV+KK+FDDIFESARYTKAL+ I+K ++     + E K +L  L  +L+ A +++E+++ + E  + ++ +   +D        +L +++ ++DE+
Sbjct:  140 IPEMLGVSKAILESVIFCHQEDSNWPLQEGAVLKKRFDDIFESARYTKALEAIRKLRKARNDDAKEFKRELDVLNVKLKMAEEIREKIEVAEEKLSRMKDKAAQLDDSVDNAENTLREMKQLSDEI 265          
BLAST of mRNA_E-fasciculatus_F_contig13775.2784.1 vs. uniprot
Match: A0A448YUC2_9STRA (AAA_23 domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YUC2_9STRA)

HSP 1 Score: 108 bits (270), Expect = 7.430e-25
Identity = 59/105 (56.19%), Postives = 73/105 (69.52%), Query Frame = 1
Query:    1 QIPLRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESARYTKALDNIKKTKQEYA--STELKVDLAALQERLRAANDLKEEMDASTETYNTIRKEIEA 309
            Q+PL LGVSKAILENVVFCHQEDASWPLQEGAV+KKKFDDIF+S RYTKALD   K K+EY   + + K  +A L+    AA   + E+    E    +  ++E+
Sbjct:  140 QVPLMLGVSKAILENVVFCHQEDASWPLQEGAVLKKKFDDIFDSTRYTKALDVFVKAKKEYILKAKDHKAVVAELRSHRHAAQGFRAEIRKHNEQMEELEDQLES 244          
BLAST of mRNA_E-fasciculatus_F_contig13775.2784.1 vs. uniprot
Match: UPI001908D956 (uncharacterized protein n=1 Tax=Cantharellus anzutake TaxID=1750568 RepID=UPI001908D956)

HSP 1 Score: 107 bits (267), Expect = 1.870e-24
Identity = 62/131 (47.33%), Postives = 86/131 (65.65%), Query Frame = 1
Query:    1 QIPLRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESARYTKALDNIKKTKQEYASTELKVD---LAALQERLRAANDLKEEMDASTETYNT-------IRKEIEAIDARTAELSESLEKLRAV 363
            +IP  LGVSKA+LENV+FCHQED+ WPL E +V+KKKFDDIFE+ +YTKALD+I+  ++E  + ELKVD   L  LQ +   A+ L+E +D  T T  T       +++EI+ ++A      ES  K + V
Sbjct:  111 EIPHLLGVSKAVLENVIFCHQEDSYWPLSEASVLKKKFDDIFEATKYTKALDSIRAIRKE-RTAELKVDKERLQTLQVQKSHADKLRERIDGLTSTLQTKQIQQEELKQEIKGVEAENIRFMESATKFKEV 240          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13775.2784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G250_ECTSI2.070e-6994.57AAA_23 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5L8V1_9PHAE1.630e-5077.69AAA_23 domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A1E7F3C8_9STRA1.090e-2685.25AAA_23 domain-containing protein (Fragment) n=1 Ta... [more]
A0A662WHK9_9STRA3.320e-2646.03Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A1V9ZB00_9STRA6.180e-2648.87DNA repair protein RAD50 n=1 Tax=Achlya hypogyna T... [more]
A0A024UCA2_9STRA8.440e-2647.37AAA_23 domain-containing protein n=3 Tax=Aphanomyc... [more]
B7FXY7_PHATC1.570e-2545.67RAD50 recombination protein n=7 Tax=Phaeodactylum ... [more]
A0A8K1CBI4_PYTOL3.980e-2544.44Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A448YUC2_9STRA7.430e-2556.19AAA_23 domain-containing protein n=1 Tax=Pseudo-ni... [more]
UPI001908D9561.870e-2447.33uncharacterized protein n=1 Tax=Cantharellus anzut... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13775contigE-fasciculatus_F_contig13775:604..1446 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score228.8
Seed ortholog evalue1.5e-57
Seed eggNOG ortholog2880.D7G250
Preferred nameRAD50
KEGG koko:K10866
KEGG Pathwayko03440,ko03450,ko04218,map03440,map03450,map04218
KEGG ModuleM00291,M00292,M00295
GOsGO:0000003,GO:0000018,GO:0000019,GO:0000075,GO:0000077,GO:0000166,GO:0000228,GO:0000278,GO:0000280,GO:0000706,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000726,GO:0000727,GO:0000729,GO:0000781,GO:0000784,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003690,GO:0003691,GO:0003697,GO:0003824,GO:0004003,GO:0004017,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005739,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006278,GO:0006281,GO:0006284,GO:0006302,GO:0006303,GO:0006310,GO:0006312,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007004,GO:0007049,GO:0007093,GO:0007127,GO:0007131,GO:0007154,GO:0007165,GO:0007346,GO:0008026,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009117,GO:0009123,GO:0009165,GO:0009892,GO:0009987,GO:0010520,GO:0010564,GO:0010605,GO:0010705,GO:0010833,GO:0016043,GO:0016233,GO:0016301,GO:0016310,GO:0016462,GO:0016740,GO:0016772,GO:0016776,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0018130,GO:0019205,GO:0019219,GO:0019222,GO:0019438,GO:0019637,GO:0022402,GO:0022414,GO:0023052,GO:0030554,GO:0030674,GO:0030870,GO:0031297,GO:0031323,GO:0031324,GO:0031570,GO:0031573,GO:0031974,GO:0031981,GO:0032069,GO:0032070,GO:0032071,GO:0032074,GO:0032076,GO:0032078,GO:0032200,GO:0032392,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033043,GO:0033260,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035556,GO:0035639,GO:0035753,GO:0035825,GO:0035861,GO:0036094,GO:0040020,GO:0042138,GO:0042162,GO:0042592,GO:0042623,GO:0042769,GO:0042770,GO:0043047,GO:0043086,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043570,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044773,GO:0044774,GO:0044786,GO:0045005,GO:0045786,GO:0045930,GO:0045934,GO:0046483,GO:0046940,GO:0048285,GO:0048519,GO:0048523,GO:0050145,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051128,GO:0051171,GO:0051172,GO:0051276,GO:0051321,GO:0051336,GO:0051346,GO:0051445,GO:0051606,GO:0051716,GO:0051726,GO:0051783,GO:0051880,GO:0055086,GO:0060090,GO:0060249,GO:0060255,GO:0060631,GO:0061982,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070035,GO:0070192,GO:0071103,GO:0071704,GO:0071840,GO:0071897,GO:0072395,GO:0072401,GO:0072422,GO:0080090,GO:0090304,GO:0090305,GO:0090407,GO:0090734,GO:0097159,GO:0097367,GO:0097551,GO:0097552,GO:0098687,GO:0098847,GO:0110025,GO:0140013,GO:0140097,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902298,GO:1902969,GO:1903046,GO:1903047,GO:1903211,GO:1990426,GO:1990505,GO:1990898,GO:1990918,GO:2000241
EggNOG free text desc.G-quadruplex DNA binding
EggNOG OGsCOG0419@1,KOG0962@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Hectar predicted targeting categoryother localisation
Exons2
Model size396
Cds size396
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927870.0446305-CDS-E-fasciculatus_F_contig13775:603..7951622927870.0446305-CDS-E-fasciculatus_F_contig13775:603..795Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13775 604..795 +
1695995731.6726034-CDS-E-fasciculatus_F_contig13775:603..7951695995731.6726034-CDS-E-fasciculatus_F_contig13775:603..795Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13775 604..795 +
1622927870.056878-CDS-E-fasciculatus_F_contig13775:1242..14461622927870.056878-CDS-E-fasciculatus_F_contig13775:1242..1446Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13775 1243..1446 +
1695995731.6847813-CDS-E-fasciculatus_F_contig13775:1242..14461695995731.6847813-CDS-E-fasciculatus_F_contig13775:1242..1446Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13775 1243..1446 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13775.2784.1prot_E-fasciculatus_F_contig13775.2784.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13775 604..1446 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13775.2784.1

>prot_E-fasciculatus_F_contig13775.2784.1 ID=prot_E-fasciculatus_F_contig13775.2784.1|Name=mRNA_E-fasciculatus_F_contig13775.2784.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=132bp
QIPLRLGVSKAILENVVFCHQEDASWPLQEGAVVKKKFDDIFESARYTKA
LDNIKKTKQEYASTELKVDLAALQERLRAANDLKEEMDASTETYNTIRKE
IEAIDARTAELSESLEKLRAVADEVYFLYTS*
back to top

mRNA from alignment at E-fasciculatus_F_contig13775:604..1446+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13775.2784.1 ID=mRNA_E-fasciculatus_F_contig13775.2784.1|Name=mRNA_E-fasciculatus_F_contig13775.2784.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=843bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13775:604..1446+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGATCCCACTGCGGCTGGGCGTGTCGAAGGCCATCCTGGAGAACGTCGT CTTCTGCCACCAGGAGGACGCCAGCTGGCCACTGCAGGAGGGCGCGGTGG TCAAGAAGAAGTTCGACGACATCTTCGAGTCCGCCCGCTACACCAAGGCC CTGGACAACATCAAGAAGACCAAGCAGGAGTACGCCTCCACCGTCAAGGC GAGTTGATCCTCGATCGGGTTCGGGGTTTTGTTTGTGTTGGTTGGCGGTT GGGGTTCGGGGTTGAGCTAGATGGGAGCGTCCGCAGTGAGGTTGGGGTAA GTCGGAGATGGACCTTCACGCTTTGCGGGTTCGGCGGGTTGGATCAGAGA GGTAAAGGGAGGGGGAGAGATCGGAGAGGAAAAATGATATAGACACAGAG AGCGGGAGATAAACAGGCACACAGACAGGCAGCCAGCCAGACAGAGAGAC AGATACAGAGAGGGAGACGCACACACAGGGAAAGGGAAAGAGAGAGAGAA AGAGAGAGGAGGAGCGGGGTTCTGGTCCGTGCTGCTTCTTGTGGGATCCA TCCGGAGGTAGACTTGCCTCAACTAGCCCCACACACATGACTGTGCCTGT ACGGCGGTGTCTCTACCTTGCCTCGCCTCTATGCTGCAGGAGCTGAAGGT CGATCTCGCCGCGCTCCAAGAGAGGCTGCGGGCGGCCAACGACCTCAAGG AAGAGATGGATGCTTCCACCGAGACGTACAACACCATTAGGAAGGAGATT GAGGCGATCGACGCGCGCACCGCGGAGCTGTCCGAGTCTCTCGAGAAGCT TCGCGCCGTGGCGGACGAGGTATATTTTTTATATACTTCGTAA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13775:604..1446+

>mRNA_E-fasciculatus_F_contig13775.2784.1 ID=mRNA_E-fasciculatus_F_contig13775.2784.1|Name=mRNA_E-fasciculatus_F_contig13775.2784.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=792bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13775:604..1446+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGATCCCACTGCGGCTGGGCGTGTCGAAGGCCATCCTGGAGAACGTCGT
CTTCTGCCACCAGGAGGACGCCAGCTGGCCACTGCAGGAGGGCGCGGTGG
TCAAGAAGAAGTTCGACGACATCTTCGAGTCCGCCCGCTACACCAAGGCC
CTGGACAACATCAAGAAGACCAAGCAGGAGTACGCCTCCACCCAGATCCC
ACTGCGGCTGGGCGTGTCGAAGGCCATCCTGGAGAACGTCGTCTTCTGCC
ACCAGGAGGACGCCAGCTGGCCACTGCAGGAGGGCGCGGTGGTCAAGAAG
AAGTTCGACGACATCTTCGAGTCCGCCCGCTACACCAAGGCCCTGGACAA
CATCAAGAAGACCAAGCAGGAGTACGCCTCCACCGAGCTGAAGGTCGATC
TCGCCGCGCTCCAAGAGAGGCTGCGGGCGGCCAACGACCTCAAGGAAGAG
ATGGATGCTTCCACCGAGACGTACAACACCATTAGGAAGGAGATTGAGGC
GATCGACGCGCGCACCGCGGAGCTGTCCGAGTCTCTCGAGAAGCTTCGCG
CCGTGGCGGACGAGGTATATTTTTTATATACTTCGTAAGAGCTGAAGGTC
GATCTCGCCGCGCTCCAAGAGAGGCTGCGGGCGGCCAACGACCTCAAGGA
AGAGATGGATGCTTCCACCGAGACGTACAACACCATTAGGAAGGAGATTG
AGGCGATCGACGCGCGCACCGCGGAGCTGTCCGAGTCTCTCGAGAAGCTT
CGCGCCGTGGCGGACGAGGTATATTTTTTATATACTTCGTAA
back to top