mRNA_E-fasciculatus_F_contig1377.2781.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1377.2781.1
Unique NamemRNA_E-fasciculatus_F_contig1377.2781.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1377.2781.1 vs. uniprot
Match: D8LC26_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC26_ECTSI)

HSP 1 Score: 372 bits (956), Expect = 1.830e-130
Identity = 188/189 (99.47%), Postives = 189/189 (100.00%), Query Frame = 1 
Query:    1 MKTLLATRYVTIPEGVTIDVKSRVVTVTGPRGELVQSFKHLNLDLQKSGKNKLRVDLWFGNRKQLACIRTICSHVENMITGVTKGYLYKMRFCYAHFPINVSITGKTVEIRNFLGEKRVRRVELAPGVDYVRTSDVKDQIELSGNDIQAVSMTAARIQQSTSVKRKDIRKFLDGIYVSEKLNIVQEEEG 567
            MKTLLATRYVTIPEGVTIDVKSRVVTVTGPRGELVQSFKHLNLDLQKSGKNKLRVDLWFGNRKQLACIRTICSHVENMITGVTKGYLYKMRFCYAHFPINVSITGKTVEIRNFLGEKRVRRVELAPGVDYVRTSDVKDQIELSGNDIQAVSMTAARIQQSTSVKRKDIRKFLDGIYVSEKLNIVQE+EG
Sbjct:    1 MKTLLATRYVTIPEGVTIDVKSRVVTVTGPRGELVQSFKHLNLDLQKSGKNKLRVDLWFGNRKQLACIRTICSHVENMITGVTKGYLYKMRFCYAHFPINVSITGKTVEIRNFLGEKRVRRVELAPGVDYVRTSDVKDQIELSGNDIQAVSMTAARIQQSTSVKRKDIRKFLDGIYVSEKLNIVQEDEG 189
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1377.2781.1 vs. uniprot
Match: A0A836CAK5_9STRA (Ribosomal protein L6, alpha-beta domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAK5_9STRA)

HSP 1 Score: 298 bits (764), Expect = 3.360e-101
Identity = 147/188 (78.19%), Postives = 167/188 (88.83%), Query Frame = 1 
Query:    1 MKTLLATRYVTIPEGVTIDVKSRVVTVTGPRGELVQSFKHLNLDLQKS-GKNKLRVDLWFGNRKQLACIRTICSHVENMITGVTKGYLYKMRFCYAHFPINVSITGKTVEIRNFLGEKRVRRVELAPGVDYVRTSDVKDQIELSGNDIQAVSMTAARIQQSTSVKRKDIRKFLDGIYVSEKLNIVQEE 561
            MKT+LATRY+ IPEGV +DVKSRVV+V GPRG L ++FKHLNLD+QK+ G  KLRVDLWFGNRKQLACIRT+CSH+EN+ITGVTKG+LYKMRFCYAHFPINV++T +TVEIRNFLGEKRVRRV L  GVDYVR++ +KDQIELSGNDI  VS  AARI Q+ +VK KDIRKFLDGIYVSEK NIVQEE
Sbjct:    1 MKTVLATRYIDIPEGVKVDVKSRVVSVEGPRGSLTRNFKHLNLDIQKADGGKKLRVDLWFGNRKQLACIRTVCSHIENLITGVTKGFLYKMRFCYAHFPINVTLTDRTVEIRNFLGEKRVRRVVLCDGVDYVRSTTIKDQIELSGNDIADVSNMAARISQACTVKNKDIRKFLDGIYVSEKTNIVQEE 188
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1377.2781.1 vs. uniprot
Match: A0A7S2XV97_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XV97_9STRA)

HSP 1 Score: 287 bits (734), Expect = 1.210e-96
Identity = 139/180 (77.22%), Postives = 164/180 (91.11%), Query Frame = 1 
Query:    1 MKTLLATRYVTIPEGVTIDVKSRVVTVTGPRGELVQSFKHLNLDLQKSGKNKLRVDLWFGNRKQLACIRTICSHVENMITGVTKGYLYKMRFCYAHFPINVSITGKTVEIRNFLGEKRVRRVELAPGVDYVRTSDVKDQIELSGNDIQAVSMTAARIQQSTSVKRKDIRKFLDGIYVSEK 540
            MKT+LATR+V IP+GV ++VK+R V+V GPRG+L ++FKH +LD++  GKNKLRVDLWFGNRKQLACIRTICSH+ENMITGVTKG+LYKMRF YAHFPINV++  +TVEIRNFLGEKRVRRVEL  GV YVRTS+VKDQIEL+GND+ AVS+TAA+IQQST+VK KDIRKFLDGIYVS+K
Sbjct:    8 MKTILATRFVEIPDGVQLNVKARTVSVEGPRGKLERAFKHQSLDMRLVGKNKLRVDLWFGNRKQLACIRTICSHIENMITGVTKGFLYKMRFVYAHFPINVTLVDRTVEIRNFLGEKRVRRVELMEGVTYVRTSNVKDQIELTGNDLTAVSLTAAQIQQSTTVKNKDIRKFLDGIYVSQK 187
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1377.2781.1 vs. uniprot
Match: W7TGP7_9STRA (60s ribosomal protein l9 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TGP7_9STRA)

HSP 1 Score: 279 bits (714), Expect = 1.650e-93
Identity = 139/192 (72.40%), Postives = 163/192 (84.90%), Query Frame = 1 
Query:    1 MKTLLATRYVTIPEGVTIDVKSRVVTVTGPRGELVQSFKHLNLDLQKSGKNK--------LRVDLWFGNRKQLACIRTICSHVENMITGVTKGYLYKMRFCYAHFPINVSITGKTVEIRNFLGEKRVRRVELAPGVDYVRTSDVKDQIELSGNDIQAVSMTAARIQQSTSVKRKDIRKFLDGIYVSEKLNIV 552
            MK +LAT+ V IPEGVT+ +KSR VTV GPRGEL ++FKHLN+  +  G NK        L+VDLWF NRKQLA IRT+CSH+EN++TGVTKG+LY+MRF YAHFPINVS+T KTVE+RNFLGEKRVRRVEL PGV+YVR+SDVKDQIEL GND+ AVS+TAARIQQ T+VKRKDIRKFLDGIYVS+K +IV
Sbjct:    1 MKLILATKIVNIPEGVTLHIKSRHVTVKGPRGELSRAFKHLNIAFELVGGNKDKGTNPKKLKVDLWFANRKQLATIRTVCSHIENLMTGVTKGFLYRMRFVYAHFPINVSLTDKTVEVRNFLGEKRVRRVELLPGVEYVRSSDVKDQIELKGNDLTAVSLTAARIQQCTTVKRKDIRKFLDGIYVSQKTHIV 192
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BLAST of mRNA_E-fasciculatus_F_contig1377.2781.1 vs. uniprot
Match: A0A7S1U0E8_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U0E8_9STRA)

HSP 1 Score: 276 bits (705), Expect = 4.900e-92
Identity = 137/188 (72.87%), Postives = 157/188 (83.51%), Query Frame = 1 
Query:    1 MKTLLATRYVTIPEGVTIDVKSRVVTVTGPRGELVQSFKHLNLDLQKSGKNKLRVDLWFGNRKQLACIRTICSHVENMITGVTKGYLYKMRFCYAHFPINVSITGKTVEIRNFLGEKRVRRVELAPGVDYVRTSDVKDQIELSGNDIQAVSMTAARIQQSTSVKRKDIRKFLDGIYVSEKLNIVQEEE 564
            M+ +LATR V IPEGVT++ K R VTVTGPRG L + F HLN+D+QK   ++L+VDLWFG  KQ ACIRT+CSHVENMITGVTKG+LYKMRFCYAHFPI V+I  + VEIRNFLGEKRVRRV L  GVD VRT +VKDQIELSGNDI AVS+TAARIQQ+T V+ KDIRKFLDGIYVSEK  IV +E+
Sbjct:   14 MRQILATRSVAIPEGVTVEAKCRTVTVTGPRGSLTRKFGHLNVDMQKISDSELKVDLWFGTLKQRACIRTVCSHVENMITGVTKGFLYKMRFCYAHFPIIVAIEQRNVEIRNFLGEKRVRRVALLDGVDAVRTDNVKDQIELSGNDIVAVSLTAARIQQATRVRNKDIRKFLDGIYVSEKTTIVLDED 201
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1377.2781.1 vs. uniprot
Match: A0A7S2RBQ4_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RBQ4_9STRA)

HSP 1 Score: 271 bits (692), Expect = 2.900e-90
Identity = 127/187 (67.91%), Postives = 159/187 (85.03%), Query Frame = 1 
Query:    1 MKTLLATRYVTIPEGVTIDVKSRVVTVTGPRGELVQSFKHLNLDLQKSGKNKLRVDLWFGNRKQLACIRTICSHVENMITGVTKGYLYKMRFCYAHFPINVSITGKTVEIRNFLGEKRVRRVELAPGVDYVRTSDVKDQIELSGNDIQAVSMTAARIQQSTSVKRKDIRKFLDGIYVSEKLNIVQEE 561
            MKT+LA+R + IPEG  +++KSR V VTGPRG L + FKH+N+D+++ G+  +RVDLWF NRK+LAC+RT+CSH+ENM  GV +GYLYKMRF Y+HFPINV++ G+ VEIRNFLGEKRVR+V+L PGV YVR+ DVKDQIELSGNDI  VS+TAA+IQQSTSV+ KD+RKFLDGIYVSEK  I +E+
Sbjct:    1 MKTVLASRTIEIPEGTEVEIKSRHVKVTGPRGVLERDFKHVNMDVRRCGEKNIRVDLWFANRKELACVRTVCSHIENMFVGVNQGYLYKMRFVYSHFPINVTLAGENVEIRNFLGEKRVRKVKLGPGVTYVRSDDVKDQIELSGNDIALVSLTAAQIQQSTSVRHKDLRKFLDGIYVSEKGPIPKED 187
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1377.2781.1 vs. uniprot
Match: A0A7R9YBB6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBB6_9STRA)

HSP 1 Score: 270 bits (690), Expect = 6.050e-90
Identity = 132/188 (70.21%), Postives = 157/188 (83.51%), Query Frame = 1 
Query:    1 MKTLLATRYVTIPEGVTIDVKSRVVTVTGPRGELVQSFKHLNLDLQKSGKNKLRVDLWFGNRKQLACIRTICSHVENMITGVTKGYLYKMRFCYAHFPINVSITGKTVEIRNFLGEKRVRRVELAPGVDYVRTSDVKDQIELSGNDIQAVSMTAARIQQSTSVKRKDIRKFLDGIYVSEKLNIVQEEE 564
            M+ +L++R V+IPEGVT++ K R VTV+GPRGEL + F HL +D+Q    + L+VDLWFG  KQ ACIRT+CSH+ENMITGVTKG+LYKMRFCYAHFPI V+I G+ VEIRNFLGEKRVR+V L  GVD +RT  VKDQIELSGNDI AVS+TAARIQQ+T V+ KDIRKFLDGIYVSEK  IVQ+E+
Sbjct:    1 MRQILSSRLVSIPEGVTVEAKCRTVTVSGPRGELTRKFGHLKVDMQLVSADTLKVDLWFGTLKQRACIRTVCSHIENMITGVTKGFLYKMRFCYAHFPIIVAIEGRNVEIRNFLGEKRVRKVALMEGVDALRTESVKDQIELSGNDIVAVSLTAARIQQATRVRNKDIRKFLDGIYVSEKGTIVQDED 188
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1377.2781.1 vs. uniprot
Match: A0A6U3WAV7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3WAV7_9STRA)

HSP 1 Score: 269 bits (688), Expect = 1.180e-89
Identity = 125/180 (69.44%), Postives = 157/180 (87.22%), Query Frame = 1 
Query:    1 MKTLLATRYVTIPEGVTIDVKSRVVTVTGPRGELVQSFKHLNLDLQKSGKNKLRVDLWFGNRKQLACIRTICSHVENMITGVTKGYLYKMRFCYAHFPINVSITGKTVEIRNFLGEKRVRRVELAPGVDYVRTSDVKDQIELSGNDIQAVSMTAARIQQSTSVKRKDIRKFLDGIYVSEK 540
            MKT+LA+R + IPEGV + + +R VTVTGPRG L + FKH+ +DL+K GK+ +RVD+WF  RKQLAC+RTICSH++NM+ GVT+G+LYKMRF Y+HFPINVS++G TVEIRNFLGEKRVR+VEL  GV YVR++DVKDQIEL+GNDI  VS+TAA+IQQ+T+V+ KD+RKFLDGIYVSEK
Sbjct:    1 MKTVLASRTIAIPEGVDVSINARSVTVTGPRGTLSRDFKHIQMDLKKIGKSSIRVDIWFATRKQLACVRTICSHIDNMMVGVTQGFLYKMRFVYSHFPINVSLSGNTVEIRNFLGEKRVRKVELLEGVKYVRSADVKDQIELAGNDIALVSLTAAKIQQATNVRHKDLRKFLDGIYVSEK 180
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1377.2781.1 vs. uniprot
Match: A0A7R9W890_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W890_9STRA)

HSP 1 Score: 269 bits (688), Expect = 1.260e-89
Identity = 130/187 (69.52%), Postives = 155/187 (82.89%), Query Frame = 1 
Query:    1 MKTLLATRYVTIPEGVTIDVKSRVVTVTGPRGELVQSFKHLNLDLQKSGKNKLRVDLWFGNRKQLACIRTICSHVENMITGVTKGYLYKMRFCYAHFPINVSITGKTVEIRNFLGEKRVRRVELAPGVDYVRTSDVKDQIELSGNDIQAVSMTAARIQQSTSVKRKDIRKFLDGIYVSEKLNIVQEE 561
            MKT+LA+R + IP+GV  +V +R VT+ GPRG L + FKH+++DL+K GK  +RVD+WF NRKQLAC+RTICSH+ENM  GVT+G+ YKMRF Y+HFPINVS+ GKTVEIRNFLGEKRVR+VEL  GV YVRT+DVKDQIELSGNDI  VS+TAARIQQ T+   KD+RKFLDGIYVSEK  I  EE
Sbjct:    3 MKTVLASRTIEIPDGVEFEVTARKVTIKGPRGTLTREFKHIDMDLRKVGKKFVRVDIWFANRKQLACVRTICSHIENMFVGVTQGFCYKMRFVYSHFPINVSLNGKTVEIRNFLGEKRVRKVELCDGVQYVRTADVKDQIELSGNDIAMVSLTAARIQQCTNTTNKDLRKFLDGIYVSEKGKIEIEE 189
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1377.2781.1 vs. uniprot
Match: A0A7S2GU27_9STRA (Hypothetical protein (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GU27_9STRA)

HSP 1 Score: 269 bits (687), Expect = 1.620e-89
Identity = 124/180 (68.89%), Postives = 159/180 (88.33%), Query Frame = 1 
Query:    1 MKTLLATRYVTIPEGVTIDVKSRVVTVTGPRGELVQSFKHLNLDLQKSGKNKLRVDLWFGNRKQLACIRTICSHVENMITGVTKGYLYKMRFCYAHFPINVSITGKTVEIRNFLGEKRVRRVELAPGVDYVRTSDVKDQIELSGNDIQAVSMTAARIQQSTSVKRKDIRKFLDGIYVSEK 540
            MKT+LA+R + IPEG+ + +K+R VTV GPRGEL ++FKH+++DL+K G   +RVD+WF  R+QLAC+RTICSH++NM  GVT+G+LYKMRF Y+HFPINV+++G TVEIRNFLGEKRVR+VEL  GV+YVR++DVKDQIELSGNDI AVS+TAARIQQ+T+++ KD+RKFLDGIYVSEK
Sbjct:    1 MKTVLASRSIEIPEGIDVTIKARNVTVKGPRGELTRNFKHIDMDLKKVGSKFIRVDVWFATRQQLACVRTICSHIDNMFVGVTQGFLYKMRFVYSHFPINVALSGNTVEIRNFLGEKRVRKVELLEGVNYVRSADVKDQIELSGNDIAAVSLTAARIQQATNIRHKDLRKFLDGIYVSEK 180
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1377.2781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC26_ECTSI1.830e-13099.47Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CAK5_9STRA3.360e-10178.19Ribosomal protein L6, alpha-beta domain-containing... [more]
A0A7S2XV97_9STRA1.210e-9677.22Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
W7TGP7_9STRA1.650e-9372.4060s ribosomal protein l9 n=2 Tax=Monodopsidaceae T... [more]
A0A7S1U0E8_9STRA4.900e-9272.87Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S2RBQ4_9STRA2.900e-9067.91Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7R9YBB6_9STRA6.050e-9070.21Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A6U3WAV7_9STRA1.180e-8969.44Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7R9W890_9STRA1.260e-8969.52Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2GU27_9STRA1.620e-8968.89Hypothetical protein (Fragment) n=1 Tax=Helicothec... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1377contigE-fasciculatus_F_contig1377:6472..10510 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score373.6
Seed ortholog evalue5.4e-101
Seed eggNOG ortholog2880.D8LC26
Preferred nameRPL9
KEGG koko:K02940
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
GOsGO:0000184,GO:0000956,GO:0002181,GO:0003002,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006139,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0007275,GO:0007389,GO:0007568,GO:0008104,GO:0008150,GO:0008152,GO:0008340,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009526,GO:0009536,GO:0009719,GO:0009892,GO:0009941,GO:0009955,GO:0009987,GO:0010033,GO:0010259,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016070,GO:0016071,GO:0019222,GO:0019439,GO:0019538,GO:0022625,GO:0022626,GO:0030054,GO:0031090,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0042221,GO:0042788,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048519,GO:0048856,GO:0050789,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0055044,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0070848,GO:0070887,GO:0070972,GO:0071310,GO:0071363,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:0098588,GO:0098805,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990089,GO:1990090,GO:1990904
EggNOG free text desc.rRNA binding
EggNOG OGsCOG0097@1,KOG3255@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal protein L6, alpha-beta domain
Ec32 orthologEc-20_004190.1
Exons4
Model size570
Cds size570
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1377.2781.1prot_E-fasciculatus_F_contig1377.2781.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1377 6472..10510 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927869.7811012-CDS-E-fasciculatus_F_contig1377:6471..66631622927869.7811012-CDS-E-fasciculatus_F_contig1377:6471..6663Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1377 6472..6663 +
1695995731.5569897-CDS-E-fasciculatus_F_contig1377:6471..66631695995731.5569897-CDS-E-fasciculatus_F_contig1377:6471..6663Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1377 6472..6663 +
1622927869.7934735-CDS-E-fasciculatus_F_contig1377:8216..83861622927869.7934735-CDS-E-fasciculatus_F_contig1377:8216..8386Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1377 8217..8386 +
1695995731.5703928-CDS-E-fasciculatus_F_contig1377:8216..83861695995731.5703928-CDS-E-fasciculatus_F_contig1377:8216..8386Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1377 8217..8386 +
1622927869.80735-CDS-E-fasciculatus_F_contig1377:8821..89191622927869.80735-CDS-E-fasciculatus_F_contig1377:8821..8919Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1377 8822..8919 +
1695995731.5832896-CDS-E-fasciculatus_F_contig1377:8821..89191695995731.5832896-CDS-E-fasciculatus_F_contig1377:8821..8919Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1377 8822..8919 +
1622927869.8176754-CDS-E-fasciculatus_F_contig1377:10400..105101622927869.8176754-CDS-E-fasciculatus_F_contig1377:10400..10510Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1377 10401..10510 +
1695995731.6001432-CDS-E-fasciculatus_F_contig1377:10400..105101695995731.6001432-CDS-E-fasciculatus_F_contig1377:10400..10510Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1377 10401..10510 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1377.2781.1

>prot_E-fasciculatus_F_contig1377.2781.1 ID=prot_E-fasciculatus_F_contig1377.2781.1|Name=mRNA_E-fasciculatus_F_contig1377.2781.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=190bp
MKTLLATRYVTIPEGVTIDVKSRVVTVTGPRGELVQSFKHLNLDLQKSGK
NKLRVDLWFGNRKQLACIRTICSHVENMITGVTKGYLYKMRFCYAHFPIN
VSITGKTVEIRNFLGEKRVRRVELAPGVDYVRTSDVKDQIELSGNDIQAV
SMTAARIQQSTSVKRKDIRKFLDGIYVSEKLNIVQEEEG*
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mRNA from alignment at E-fasciculatus_F_contig1377:6472..10510+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1377.2781.1 ID=mRNA_E-fasciculatus_F_contig1377.2781.1|Name=mRNA_E-fasciculatus_F_contig1377.2781.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4039bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1377:6472..10510+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAAGACCCTGTTAGCCACGCGCTATGTGACCATCCCCGAGGGCGTCAC
CATCGACGTCAAGTCCCGCGTCGTGACGGTCACGGGACCCCGGGGAGAGC
TGGTGCAGAGCTTTAAGCACCTCAACCTCGACTTGCAAAAGTCGGGCAAG
AACAAGCTGCGCGTGGACCTGTGGTTCGGCAACCGCAAGCAGGTGCGCGA
GTGTGTGTGGGGGAGGTGGTGCGGTCTTGTCGTGGGATGACTGACTTCGT
TACCTAGCACTCCCGCTACGACCGGGGGTGTGCTGTATATGTCTTGCTGA
ATCCAACTCTCTTGGGGGAGATTTTAATGGATGCACCATCGGGTTGCGAG
AGGCGAGGAGGACGCGACAGACAGCAATGGGCGAGGATTGATGGGCCGGC
ATTGAGCACAAGGTCGCCTCATCCTCTCAACTTTGACCCGAACTATGATT
GTTGGAACTTGGTTGCTGGAAAATTGGAAGTCCTATCTGACCACTGCTGT
TATGTGTGGGCCGCGTGTGCACAAGCACTGCTGCTGCTGCTGTAGCCCTC
GCACATGGTTTTTGGTGTGAAAAACGTAAGCCCCCCTCTTTTCTTCCGTA
TATGAGGCATCGACGATATGCAGCACGTGATATGCTGTGCCTCATGAGAT
CCGCAAGGAATGGTGGCGGTGAAACCATGTGCAGCATGCAGCGATGTCAT
GCACGGTGGCGTGTCCCTAGAATAGACGTACGGTACAGCAGTCCATAATA
GCCCAAACTCATTTGATGGAAAAAATGTCGCCCTTGCGGTAGACAGATGT
AGACTGGATGTTTTAAAAAGTGGTTCACCAGACAACAACTTCGTTTACCT
CACTGGAAAGAGCTGCTCCTGGCTTATCATTACCTGCGCGTGCAATCTTG
CCACCAGTCGATGTGTTGATGCGCTGCTGTACGCAGACAGGCTGCGTCAA
AGGCTCACGGCCTCGCGAGAGCAACCGCTAGGTTGTGAAAACCATTTCAA
GCACTTCTCTCATTTCGCCAAAGGAAAATTTGGGTGAATATACTATTGAG
CAGACGTTCTGTTTGAAGCCCTTTGTCGACGCTCCCCACCGCCTTTTCTT
GGACAGCAAACAAGCGCCCCAATGGCTCCGCTGCTATGTTCCAATCCGTC
CACGGAATCGTTTCTCCTTGGCACGGATACAAAGACGCAAACACCTATCT
CAGCTTTCATGGCGGTGTACCAACGCTTGTGGATCCCGTCCAGCCATAAC
CCATGGCCCAAGTATCGTGGGTGGTGGCACTGCTGCATGGAGATGCTTCG
TTGCGTTGATGCGACGATAGAGTGCGAAGATAGAGTGATGGCGTGAAAAT
ATAATAGAGCTCTCGACGAGACGTTTTCAAAACCACACCGCTCTCGGCGT
TGGCAACCCGTTCGTCGTCGTCGTAGAGCCATCGAGCTATGGAAGTCTGC
CTTGGTGGGGTATGCGATGATGAGTCGCACTTTCACCGCACACCCAGAAC
CCCCACATGTGCGGCAACGACGACTAACCTATCTGTAGCATGTGGTTTTT
GTTTCGCGTCTGATTAGCGAAATTCGACGGCCCCACTTCCCTATTTTAGC
TCTAAGATGTAGTCATGTTGCATCTTGATGACCCTTTTCCACGTCCCTCG
TTCTCTTTCTTTTCTTGACCTGCTACCCCCCCGTTTGCCTCGCCCCCCCC
CCCCTCCGTGCCGCCTGCTACAAAACCTCTATGGCGACGCCGCAGCTTGC
GTGCATCCGCACCATCTGCTCGCACGTCGAGAACATGATCACCGGTGTCA
CCAAGGGCTACTTGTACAAGATGCGCTTCTGTTACGCTCACTTCCCCATC
AACGTGTCCATCACGGGAAAGACCGTCGAGATCCGCAACTTCCTCGGCGA
GAAGCGCGTTCGCAGGTGTGTCACGTCTACAGTCTATAGTACGTCTCTGT
TTTTTTATATAAACGTCGAAAGTTTGCATAAAAATAAAACTACCACAGAA
CAGGCCGTCTTTCCGTGGGAGACCACCTGGGGGCTGTTTCGTGTGAAAAT
TTGGTGATTATCCCGTGGCTCAAAATGTGGTGATGTTCCCGGTGGTTTTA
CCGTCGCTCGCAGCGGTGTTGTGATCTGCTCTCGCAGCCCAAGAACCGTT
TTTGCATATTTGCGCAGGAGAATCGGCTATTGCACGTGCATCACTCTTTT
TACTCCGTGTTCGTTGCATGATGCCCACGGGCAGCTCTTGTGCCATTTGC
CGATCTCGCCACCCGCCACGGTCCATGTTTTCGGCACTCTAGATCTGCTG
TGGGCGCTATTGAACGTTGTTCATGCGGTGTGTTTTTGATGTCGTTGCAG
GGTGGAGCTGGCCCCCGGTGTGGATTACGTGCGTACCTCGGACGTTAAGG
ACCAGATCGAGCTCAGCGGCAACGACATCCAGGCCGTTTCCATGACCGGT
GAGCCTCGCCTGTGGTTTCATCGTCATCCGTTTTCACTCTGGAATACTCT
ATACCCTGTGTGCAGAGTCGATCGGTGGAAACACAAAAGTTGCTCGAGGT
GTCCGGAGTGTGTCGGCTTCTGCATGCATTCGAACCGTCTTTTTTCCGAC
CGAGATCGGCGATAATGCCTGGCTGGTTTTTGTAAGTCTAGCGCAGGAGC
AACGCCAATGTTGGACGGATGGGTTGACCAGTGGCGCTCAAAATCGAGGC
CATGATTGTAGGCAGGTAGAGCGCGTGCACGTTTGATGCCGCGCCGAGGG
TATGCATTTCAAGTAGATGGGTAGAGCTGGCTTACTTGGCCCGCATCCAG
TCGTGTTCTGCTCCCCACGTGGGAGCGGTCGCGTGGAGGTCGTGGTAGGT
AGGACAAGGAGGCTCAAGATTTGTGGGAAAAGGATGTATAAGACCAAGAC
GGCTGGGCGTAAATAGCTGTCCGAGCAAGTTTTTGCGACATGCTTTTTCT
ATTTTTTCCCGAAGTTTAGTGTGGTAAATATTTTTCGGTGGTGTTTGCGG
CATTCGATGGGCACACCGGGCTGCCACGTCTCCAGTGGCCGCTGGTCGGG
AGCGTTTTGGAAGGCCTGGTGTTTTTTTTGTGTCTGGCGAATCGCCCGTT
GGCGGAGTGTTGCGGTGTGCTGTATTGTGTTTGCCCGAGTAGGACGAGTT
GGGTCTGTCTCGCTGTCGACCACGAACAAACGAGCCCTGTGACCTTTCGC
GGCGACTGATACTCGGAAGGTGTGTGTGTGTAGACGACGTAAGGTTGCCA
AGAAGCATGCCGTTTGCTGGTCTTACGAGCAAGGGCTTTGCAATCTCAGT
GCTCAAGCAGCTGGCGAACGTTTCCGGCAGGGTGGTGCGGTATACACGTC
TGCTGCTGTGCTTGTCGAAGCCGATCTCGTTGGCGGCGTGATAATGTTGA
TAGTGCACGAACTGGGGCAAAGGTCTGTCGCAGAATCCTTGACTTGCGAG
TAGTGGCGCGCATTAGCACTCAAGTGGTGATGCGATGCAGGGTAAGTGTT
GCAAAGTTGGACGTCGTCAACCACGAACTTGGTCTCATTTTCGTTCAAGA
AAGGCGGGAGGCGTAAAGGGACTTGTTTATTTAACGCTTGGCCCCACGCG
CGTCATGCGGTCACGTATACCTCAGAACGTGCCTAACACTGGGGAATTTA
TCCAGCTGCTGTAGTTCGCTCGATAGTCTGCACGAGAGTGGTGTCGTCTC
ACCGGCTTTGCCTTCTTCGTGAACACCGCTGGTGTACCCCCCTCCCCCTC
CATTACATGAGATCCCGGAGACGATCGAAGTTATTTCCGTTATTTTGTGC
TTGAACATGGTTCACCAACCCCCGGACGTCTTTGTCTTGTTTCATGACTG
ATTGATCGCCCCCTCTTTCCGCACCCGCGCTCAAAAATTGACAAAAATTA
TCGCTTCTTGACTGTCTCATGTCTCACAGCGGCGCGCATCCAGCAGTCGA
CGTCGGTGAAGCGGAAGGATATCCGTAAGTTCCTTGACGGTATCTACGTG
AGCGAGAAGCTCAACATCGTCCAGGAGGAGGAGGGCTAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1377:6472..10510+

>mRNA_E-fasciculatus_F_contig1377.2781.1 ID=mRNA_E-fasciculatus_F_contig1377.2781.1|Name=mRNA_E-fasciculatus_F_contig1377.2781.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1140bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1377:6472..10510+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAAGACCCTGTTAGCCACGCGCTATGTGACCATCCCCGAGGGCGTCAC
CATCGACGTCAAGTCCCGCGTCGTGACGGTCACGGGACCCCGGGGAGAGC
TGGTGCAGAGCTTTAAGCACCTCAACCTCGACTTGCAAAAGTCGGGCAAG
AACAAGCTGCGCGTGGACCTGTGGTTCGGCAACCGCAAGCAGATGAAGAC
CCTGTTAGCCACGCGCTATGTGACCATCCCCGAGGGCGTCACCATCGACG
TCAAGTCCCGCGTCGTGACGGTCACGGGACCCCGGGGAGAGCTGGTGCAG
AGCTTTAAGCACCTCAACCTCGACTTGCAAAAGTCGGGCAAGAACAAGCT
GCGCGTGGACCTGTGGTTCGGCAACCGCAAGCAGCTTGCGTGCATCCGCA
CCATCTGCTCGCACGTCGAGAACATGATCACCGGTGTCACCAAGGGCTAC
TTGTACAAGATGCGCTTCTGTTACGCTCACTTCCCCATCAACGTGTCCAT
CACGGGAAAGACCGTCGAGATCCGCAACTTCCTCGGCGAGAAGCGCGTTC
GCAGCTTGCGTGCATCCGCACCATCTGCTCGCACGTCGAGAACATGATCA
CCGGTGTCACCAAGGGCTACTTGTACAAGATGCGCTTCTGTTACGCTCAC
TTCCCCATCAACGTGTCCATCACGGGAAAGACCGTCGAGATCCGCAACTT
CCTCGGCGAGAAGCGCGTTCGCAGGGTGGAGCTGGCCCCCGGTGTGGATT
ACGTGCGTACCTCGGACGTTAAGGACCAGATCGAGCTCAGCGGCAACGAC
ATCCAGGCCGTTTCCATGACCGGGTGGAGCTGGCCCCCGGTGTGGATTAC
GTGCGTACCTCGGACGTTAAGGACCAGATCGAGCTCAGCGGCAACGACAT
CCAGGCCGTTTCCATGACCGCGGCGCGCATCCAGCAGTCGACGTCGGTGA
AGCGGAAGGATATCCGTAAGTTCCTTGACGGTATCTACGTGAGCGAGAAG
CTCAACATCGTCCAGGAGGAGGAGGGCTAACGGCGCGCATCCAGCAGTCG
ACGTCGGTGAAGCGGAAGGATATCCGTAAGTTCCTTGACGGTATCTACGT
GAGCGAGAAGCTCAACATCGTCCAGGAGGAGGAGGGCTAA
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