mRNA_E-fasciculatus_F_contig13769.2779.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13769.2779.1
Unique NamemRNA_E-fasciculatus_F_contig13769.2779.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13769.2779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13769contigE-fasciculatus_F_contig13769:2237..2664 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size429
Cds size300
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927869.5808015-CDS-E-fasciculatus_F_contig13769:2236..25361622927869.5808015-CDS-E-fasciculatus_F_contig13769:2236..2536Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13769 2237..2536 +
1695995731.4167786-CDS-E-fasciculatus_F_contig13769:2236..25361695995731.4167786-CDS-E-fasciculatus_F_contig13769:2236..2536Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13769 2237..2536 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927869.5934417-UTR-E-fasciculatus_F_contig13769:2536..26641622927869.5934417-UTR-E-fasciculatus_F_contig13769:2536..2664Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13769 2537..2664 +
1695995731.4272976-UTR-E-fasciculatus_F_contig13769:2536..26641695995731.4272976-UTR-E-fasciculatus_F_contig13769:2536..2664Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13769 2537..2664 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13769.2779.1prot_E-fasciculatus_F_contig13769.2779.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13769 2237..2536 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13769.2779.1

>prot_E-fasciculatus_F_contig13769.2779.1 ID=prot_E-fasciculatus_F_contig13769.2779.1|Name=mRNA_E-fasciculatus_F_contig13769.2779.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=100bp
PAVIYGSPLLLLGAHVPALSLRQQPRHRHRRHRLRHCCLPYLPPPTPCAA
PPPSHPASPLAESPTCIYICASSMMMRQVNMNIVPAFLGTAKGTAATPL*
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mRNA from alignment at E-fasciculatus_F_contig13769:2237..2664+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13769.2779.1 ID=mRNA_E-fasciculatus_F_contig13769.2779.1|Name=mRNA_E-fasciculatus_F_contig13769.2779.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=428bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13769:2237..2664+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCGGCGGTGATTTACGGGTCTCCTCTGCTGCTGCTGGGTGCTCATGTACC
GGCGCTCTCCCTCCGCCAACAGCCACGCCATCGCCATCGCCGCCATCGCC
TCCGCCACTGTTGTCTTCCATACCTCCCACCCCCGACGCCTTGCGCTGCT
CCTCCTCCCTCCCACCCGGCCTCTCCTCTTGCTGAATCTCCGACATGTAT
TTATATTTGCGCCTCTTCGATGATGATGCGCCAGGTGAATATGAATATTG
TACCCGCCTTTTTGGGCACAGCCAAAGGCACAGCAGCAACACCCCTGTAG
CTCTATGCTGCTCACGCAAGAACCTTCCCAAGGCAGACAGACCGCTGGCA
GAGCTGGGGGCAGTATCCTCCCCGATCCGGTTGCTCTCCGTGGTCTCTCT
CGCGAATATCCCTCTCGTTCGTTGCGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13769:2237..2664+

>mRNA_E-fasciculatus_F_contig13769.2779.1 ID=mRNA_E-fasciculatus_F_contig13769.2779.1|Name=mRNA_E-fasciculatus_F_contig13769.2779.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=600bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13769:2237..2664+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCGGCGGTGATTTACGGGTCTCCTCTGCTGCTGCTGGGTGCTCATGTACC
GGCGCTCTCCCTCCGCCAACAGCCACGCCATCGCCATCGCCGCCATCGCC
TCCGCCACTGTTGTCTTCCATACCTCCCACCCCCGACGCCTTGCGCTGCT
CCTCCTCCCTCCCACCCGGCCTCTCCTCTTGCTGAATCTCCGACATGTAT
TTATATTTGCGCCTCTTCGATGATGATGCGCCAGGTGAATATGAATATTG
TACCCGCCTTTTTGGGCACAGCCAAAGGCACAGCAGCAACACCCCTGTAG
CCGGCGGTGATTTACGGGTCTCCTCTGCTGCTGCTGGGTGCTCATGTACC
GGCGCTCTCCCTCCGCCAACAGCCACGCCATCGCCATCGCCGCCATCGCC
TCCGCCACTGTTGTCTTCCATACCTCCCACCCCCGACGCCTTGCGCTGCT
CCTCCTCCCTCCCACCCGGCCTCTCCTCTTGCTGAATCTCCGACATGTAT
TTATATTTGCGCCTCTTCGATGATGATGCGCCAGGTGAATATGAATATTG
TACCCGCCTTTTTGGGCACAGCCAAAGGCACAGCAGCAACACCCCTGTAG
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