mRNA_E-fasciculatus_F_contig13755.2772.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13755.2772.1
Unique NamemRNA_E-fasciculatus_F_contig13755.2772.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13755.2772.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13755contigE-fasciculatus_F_contig13755:2784..3159 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size376
Cds size315
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927868.8418217-CDS-E-fasciculatus_F_contig13755:2783..30981622927868.8418217-CDS-E-fasciculatus_F_contig13755:2783..3098Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13755 2784..3098 +
1695995731.0688965-CDS-E-fasciculatus_F_contig13755:2783..30981695995731.0688965-CDS-E-fasciculatus_F_contig13755:2783..3098Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13755 2784..3098 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927868.8637233-UTR-E-fasciculatus_F_contig13755:3098..31591622927868.8637233-UTR-E-fasciculatus_F_contig13755:3098..3159Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13755 3099..3159 +
1695995731.0774443-UTR-E-fasciculatus_F_contig13755:3098..31591695995731.0774443-UTR-E-fasciculatus_F_contig13755:3098..3159Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13755 3099..3159 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13755.2772.1prot_E-fasciculatus_F_contig13755.2772.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13755 2784..3098 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13755.2772.1

>prot_E-fasciculatus_F_contig13755.2772.1 ID=prot_E-fasciculatus_F_contig13755.2772.1|Name=mRNA_E-fasciculatus_F_contig13755.2772.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=105bp
DDDDVCEALGCAYWSSILLLTAWSHFCLTPQTRYVCLRVCFGIIVAAAST
VLRTCSQLTKEEPCVCVSVSVIVPIYSGRQPTHFSVHMLDEPINVTHGRK
LNTS*
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mRNA from alignment at E-fasciculatus_F_contig13755:2784..3159+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13755.2772.1 ID=mRNA_E-fasciculatus_F_contig13755.2772.1|Name=mRNA_E-fasciculatus_F_contig13755.2772.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=376bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13755:2784..3159+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GACGACGACGACGTTTGTGAGGCCCTTGGCTGCGCCTACTGGAGCAGTAT
TCTACTTCTCACGGCATGGTCACATTTCTGTTTGACACCGCAAACTCGAT
ATGTGTGTTTGCGTGTGTGTTTTGGTATCATAGTAGCAGCAGCATCGACC
GTGCTACGTACTTGTAGCCAGCTGACCAAGGAAGAACCGTGTGTGTGTGT
GTCTGTGTCTGTGATTGTGCCCATATACTCTGGGCGCCAACCCACACATT
TCTCTGTGCATATGCTTGACGAACCAATCAACGTCACACACGGGAGGAAG
TTAAACACGAGTTAGTTGATTGTTCTCCTTTCTCTACACCTTCCCTCCTG
CGGTGTTTTCGTTCGATTCGAAACGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13755:2784..3159+

>mRNA_E-fasciculatus_F_contig13755.2772.1 ID=mRNA_E-fasciculatus_F_contig13755.2772.1|Name=mRNA_E-fasciculatus_F_contig13755.2772.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=630bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13755:2784..3159+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GACGACGACGACGTTTGTGAGGCCCTTGGCTGCGCCTACTGGAGCAGTAT
TCTACTTCTCACGGCATGGTCACATTTCTGTTTGACACCGCAAACTCGAT
ATGTGTGTTTGCGTGTGTGTTTTGGTATCATAGTAGCAGCAGCATCGACC
GTGCTACGTACTTGTAGCCAGCTGACCAAGGAAGAACCGTGTGTGTGTGT
GTCTGTGTCTGTGATTGTGCCCATATACTCTGGGCGCCAACCCACACATT
TCTCTGTGCATATGCTTGACGAACCAATCAACGTCACACACGGGAGGAAG
TTAAACACGAGTTAGGACGACGACGACGTTTGTGAGGCCCTTGGCTGCGC
CTACTGGAGCAGTATTCTACTTCTCACGGCATGGTCACATTTCTGTTTGA
CACCGCAAACTCGATATGTGTGTTTGCGTGTGTGTTTTGGTATCATAGTA
GCAGCAGCATCGACCGTGCTACGTACTTGTAGCCAGCTGACCAAGGAAGA
ACCGTGTGTGTGTGTGTCTGTGTCTGTGATTGTGCCCATATACTCTGGGC
GCCAACCCACACATTTCTCTGTGCATATGCTTGACGAACCAATCAACGTC
ACACACGGGAGGAAGTTAAACACGAGTTAG
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