mRNA_E-fasciculatus_F_contig13754.2771.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13754.2771.1
Unique NamemRNA_E-fasciculatus_F_contig13754.2771.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13754.2771.1 vs. uniprot
Match: D7FNX6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNX6_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 1.320e-38
Identity = 88/133 (66.17%), Postives = 92/133 (69.17%), Query Frame = 1 
Query:    1 QFEPYVERFAAANELDPSTAALALHGACSLAYALRVATSSIAGWNGIVGSHPLPLAEDVDMTAVMQELFKPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSGVEGGVSGKGKTAKKGSKRKK 399
            + EPYVERFAAANELDPSTAALALHGACSLAYAL+VATSSIAGWNG VGSHPLPLA DVDMT VM ELF+PP         XXXXX                         +GVEG VS KGKTAKKGSKRKK
Sbjct:  149 ELEPYVERFAAANELDPSTAALALHGACSLAYALQVATSSIAGWNGFVGSHPLPLAGDVDMTVVMNELFRPPPTPPASPRSXXXXXTKGKKGGAKKKKAAAAGGESGA---AGVEGVVSEKGKTAKKGSKRKK 278
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13754.2771.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNX6_ECTSI1.320e-3866.17Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13754contigE-fasciculatus_F_contig13754:61..876 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-10_004730.1
Exons2
Model size402
Cds size402
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927868.7252185-CDS-E-fasciculatus_F_contig13754:60..1761622927868.7252185-CDS-E-fasciculatus_F_contig13754:60..176Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13754 61..176 +
1695995731.0406284-CDS-E-fasciculatus_F_contig13754:60..1761695995731.0406284-CDS-E-fasciculatus_F_contig13754:60..176Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13754 61..176 +
1622927868.7369103-CDS-E-fasciculatus_F_contig13754:590..8761622927868.7369103-CDS-E-fasciculatus_F_contig13754:590..876Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13754 591..876 +
1695995731.0584455-CDS-E-fasciculatus_F_contig13754:590..8761695995731.0584455-CDS-E-fasciculatus_F_contig13754:590..876Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13754 591..876 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13754.2771.1prot_E-fasciculatus_F_contig13754.2771.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13754 61..876 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13754.2771.1

>prot_E-fasciculatus_F_contig13754.2771.1 ID=prot_E-fasciculatus_F_contig13754.2771.1|Name=mRNA_E-fasciculatus_F_contig13754.2771.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=134bp
QFEPYVERFAAANELDPSTAALALHGACSLAYALRVATSSIAGWNGIVGS
HPLPLAEDVDMTAVMQELFKPPPTPPASPPSRSKSKNRGKKGGGKKKKAA
AAAAGGGGGGDSGVEGGVSGKGKTAKKGSKRKK*
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mRNA from alignment at E-fasciculatus_F_contig13754:61..876+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13754.2771.1 ID=mRNA_E-fasciculatus_F_contig13754.2771.1|Name=mRNA_E-fasciculatus_F_contig13754.2771.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=816bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13754:61..876+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGTTCGAGCCTTACGTTGAGCGCTTCGCGGCCGCGAACGAATTGGATCC
GTCCACCGCCGCGCTGGCCTTGCACGGGGCCTGCAGCCTCGCGTACGCGC
TCCGGGTGGCGACGAGGTGAACCGAGCTGCCGCTTTCCCCTTGCAAGATC
TCGCCTGTATTGCTCCGTCTATCGGCAGAGAGCGTCGGATATAAATGTAC
AGCAGTGGACAGCTCGAGCGATGAAAGGCGCACCATAACGTCGTGCTTCT
CACCACGAACTCTTTCCGTGTTCGACATCGCGACGACCCTTGTACCATGC
TCTGAGGGACGCCAACCGCAGCTACGTTTCCTCGTTCCCTCTCGTTGCCT
AGATTTTAGTTTTTTCTGCAGCTGACGCGCTCTAAAGTTGCTAATTTCCC
TCCGCCCCCCCACGTTGCCTAGGAATATTTCGCAGCTCAGTCTCGGTCTC
AAAGTTTCGGCGTGTGCAGTACAATACGTCCACGGCTCGCCCTCGCCTCC
GTCACCCACCTCGTGCGTTGGTTTTATTAGCAGCATTGCCGGCTGGAACG
GGATCGTCGGAAGCCATCCGCTTCCGCTGGCGGAGGATGTGGACATGACG
GCCGTCATGCAAGAACTCTTCAAGCCCCCGCCAACCCCCCCTGCATCTCC
TCCCAGCCGCAGCAAGAGCAAAAACAGGGGGAAGAAAGGTGGCGGAAAGA
AGAAAAAAGCTGCTGCTGCTGCTGCTGGTGGTGGTGGTGGTGGTGATTCC
GGGGTAGAAGGAGGGGTGTCAGGAAAGGGGAAGACGGCGAAAAAAGGCTC
GAAACGAAAAAAGTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13754:61..876+

>mRNA_E-fasciculatus_F_contig13754.2771.1 ID=mRNA_E-fasciculatus_F_contig13754.2771.1|Name=mRNA_E-fasciculatus_F_contig13754.2771.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=804bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13754:61..876+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGTTCGAGCCTTACGTTGAGCGCTTCGCGGCCGCGAACGAATTGGATCC
GTCCACCGCCGCGCTGGCCTTGCACGGGGCCTGCAGCCTCGCGTACGCGC
TCCGGGTGGCGACGAGCAGTTCGAGCCTTACGTTGAGCGCTTCGCGGCCG
CGAACGAATTGGATCCGTCCACCGCCGCGCTGGCCTTGCACGGGGCCTGC
AGCCTCGCGTACGCGCTCCGGGTGGCGACGAGCAGCATTGCCGGCTGGAA
CGGGATCGTCGGAAGCCATCCGCTTCCGCTGGCGGAGGATGTGGACATGA
CGGCCGTCATGCAAGAACTCTTCAAGCCCCCGCCAACCCCCCCTGCATCT
CCTCCCAGCCGCAGCAAGAGCAAAAACAGGGGGAAGAAAGGTGGCGGAAA
GAAGAAAAAAGCTGCTGCTGCTGCTGCTGGTGGTGGTGGTGGTGGTGATT
CCGGGGTAGAAGGAGGGGTGTCAGGAAAGGGGAAGACGGCGAAAAAAGGC
TCGAAACGAAAAAAGTAGCAGCATTGCCGGCTGGAACGGGATCGTCGGAA
GCCATCCGCTTCCGCTGGCGGAGGATGTGGACATGACGGCCGTCATGCAA
GAACTCTTCAAGCCCCCGCCAACCCCCCCTGCATCTCCTCCCAGCCGCAG
CAAGAGCAAAAACAGGGGGAAGAAAGGTGGCGGAAAGAAGAAAAAAGCTG
CTGCTGCTGCTGCTGGTGGTGGTGGTGGTGGTGATTCCGGGGTAGAAGGA
GGGGTGTCAGGAAAGGGGAAGACGGCGAAAAAAGGCTCGAAACGAAAAAA
GTAG
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