prot_E-fasciculatus_F_contig1375.2768.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig1375.2768.1
Unique Nameprot_E-fasciculatus_F_contig1375.2768.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length817
Homology
BLAST of mRNA_E-fasciculatus_F_contig1375.2768.1 vs. uniprot
Match: D7FK42_ECTSI (DNA-directed DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK42_ECTSI)

HSP 1 Score: 1089 bits (2817), Expect = 0.000e+0
Identity = 671/829 (80.94%), Postives = 690/829 (83.23%), Query Frame = 0
Query:    1 MHSNTRPEAVWNLVPPGRPPSGPALHAQAKNRPFALLKSLEPPRGPDFFPMEKFRRPLWPDGDRVGASGIGTGSERGHGKGPGTASDRHVSQAFANARTSQDSSLYLHTPTSGPRGAGGAMAPFSPALSRASSTMMTPVQRTQQQPEGFSMFGGKAYSTPASHGSDSSQPPLSSHTXXXXXXPTAAPGMIPYGGGGSSGVGGGLARFKTLAQETQEEEHKKQQEIRRGSGRGDSSSGHPIRNPTARG-----TNFLSPSSLMGPTPNFFTPFDDSPSSSTAYTFTPPSSAAPPSYANWSTGPSTAAGRKRPRAPSTATAA---------VRSVGGGNLSADVSGARTWGSLADGSRGRAGQVQQXXXXXXXXXXXXXXXXXXXXXXXXXXNSVSS--RSPRPARNKSPSQSPRTSQPPPIPRRYKLDDFAGADDVCFNAAASSEGLAIFLERCEASGVASLSVLWADLTTSFSAMTVKSCLPSQSCFRWNCACGRKPRAQQATAPLLGAVVYLPGKAERVAWGASTDKGAESDTSGCSQEEDFVEGEMYLLPLGACVGEDKEAAEAAGYQLPLDCETSYDERWAAFAKLVALPVKKVVFNAQARSKRRTIGVALMPLIAWMRRPESRPFLARSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSTKHHTTVSGLFDTRVAAWMADTGKADKALEFEALCVSWLKGEGSEAAGANARSGDGGRSPAIVAAVVHAEGCCRRNLALAGKISAELEGAKMLAACEQVEMPAIPVLAGMEVSGVVFLPDRVTRFSNALGNHLEGLKRTAVDAVGGRDFNLASPDQ 813
            MHSNTRPEAVWNLVPPGRPPSGPALH QAKNRPFALLKSLEPPRGPD+FPME FRRPLWPD DRVGASGIG G          TASDRH+SQA ANARTSQ SS +LHTPTSGPRG G  MA FSPALSRAS+TMMTPVQ+TQQ+PEGFSMFGGKAYSTPASHGS  SQPPLSSHT      PT APG IPYGGGGSSGVGGGLARFKTL QETQ              GRG SSSG  IR+ TARG     +NFLSPSSLMG  PN  TP DDSPSSS AY FTP S            GP TAAGRKRPRAPSTATAA         V SVGGGNLSADVSGARTWGSLA+GSRGRA     XXXXXXXXXXXXXXXXXXXXXXXXXX       RSPRPARNKSPSQSPRTSQPPP PRRYKLDDFAGADDVCFNAAASSEGLAIFLERCEASGVASLSVLWADLTTSFSAMTVKSCLPSQSCFRWNCACGR+PRAQQATAP++GAVVYLPG+AER+AWGAS   G ESDTSGCSQE+DF EGEMYLLPL ACVGEDKEAA+AAGY LPLDCETSYDERWAAFAKLVALPVKKV               ALMPLIAW RRPESR FLARSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXX        LSTKHHTTVSGLFDTRVAAWM DTGKADKALEFEALCVSWLKGEGS+A G NA SGDGGR PAIVAAV  AEGCCRRNLALAGKISAELEGAKMLAACEQVEMPAIPVLAGMEVSGVVFLP+RVTRFS+ALGNHLEGLKRTAV AVGGRDFNLASPDQ
Sbjct:    1 MHSNTRPEAVWNLVPPGRPPSGPALHTQAKNRPFALLKSLEPPRGPDYFPMENFRRPLWPDDDRVGASGIGAGXXXXXXXXXXTASDRHISQA-ANARTSQHSSPHLHTPTSGPRGTGRGMASFSPALSRASTTMMTPVQQTQQKPEGFSMFGGKAYSTPASHGSICSQPPLSSHTPIGSNTPTVAPGTIPYGGGGSSGVGGGLARFKTLVQETQXXXXXXXXXXXXXXGRGGSSSGCGIRDSTARGMPSPSSNFLSPSSLMGSPPNALTPCDDSPSSSAAYAFTPSSXXXXXXXXXXXXGPLTAAGRKRPRAPSTATAALGRPMTPGTVLSVGGGNLSADVSGARTWGSLAEGSRGRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSPRPARNKSPSQSPRTSQPPPTPRRYKLDDFAGADDVCFNAAASSEGLAIFLERCEASGVASLSVLWADLTTSFSAMTVKSCLPSQSCFRWNCACGRQPRAQQATAPMIGAVVYLPGRAERIAWGASA--GTESDTSGCSQEDDFEEGEMYLLPLAACVGEDKEAAKAAGYHLPLDCETSYDERWAAFAKLVALPVKKV---------------ALMPLIAWRRRPESRTFLARSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXH-------LSTKHHTTVSGLFDTRVAAWMTDTGKADKALEFEALCVSWLKGEGSDAEGVNAGSGDGGRLPAIVAAVARAEGCCRRNLALAGKISAELEGAKMLAACEQVEMPAIPVLAGMEVSGVVFLPERVTRFSDALGNHLEGLKRTAVKAVGGRDFNLASPDQ 804          
BLAST of mRNA_E-fasciculatus_F_contig1375.2768.1 vs. uniprot
Match: A0A6H5J5W8_9PHAE (POLAc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5W8_9PHAE)

HSP 1 Score: 895 bits (2313), Expect = 6.060e-315
Identity = 576/813 (70.85%), Postives = 596/813 (73.31%), Query Frame = 0
Query:   51 MEKFRRPLWPDGDRVGASGIGTGSERGHGKGPGTASDRHVSQAFANARTSQDSSLYLHTPTSGPRGAGGAMAPFSPALSRASSTMMTPVQRTQQQPEGFSMFGGKAYSTPASHGSDSSQPPLSSHTXXXXXXPTAAPGMIPYGGGGSSGVGGGLARFKTLAQETQEEEHKKQQEIRRGSGRGDSSSGHPIRNPTARG-----TNFLSPSSLMGPTPNFFTPFDDSPSSSTAYTFTPPSSAAPPSYANWSTGPSTAAGRKRPRAPSTATAA---------VRSVGGGNLSADVSGARTWGSLADGSRGRAGQVQQXXXXXXXXXXXXXXXXXXXXXXXXXXNSVSSRSPRPARNKSPSQSPRTSQPP-PIPRRYKLDDFAGADDVCFNAA----------------------------ASSEGLAIFLERCEASGVASLSVLWADLTTSFSAMTVKSCLPSQSCFRWNCACGRKPRAQQATAPLLGAVVYLPGKAERVAWGASTDKGAESDTSGCSQEEDFVEGEMYLLPLGACVGEDKEAAEAAGYQLPLDCETSYDERWAAFAKLVALPVKKVVFNAQARSKRRTIGVALMPLIAWMRRPESRPFLARSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSTKHHTTVSGLFDTRVAAWMADTGKADKALEFEALCVSWLKGEGSEAA------GANARSGDGGRSPAIVAAVVHAEGCCRRNLALAGKISAELEGAKMLAACEQVEMPAIPVLAGMEVSGVVFLPDRVTRFSNALGNHLEGLKRTAVDAVGGRDFNLASPDQA 814
            MEKFRRPLWPD  R GASGIG G ERGHGKGPGTASDRH+SQ+FANARTSQ SS +LHTPTSGPRG GG M  FSPALSRASSTMMTPVQ+TQQQP GFSMFGGKAYSTPASHGS SSQPPLSSHT       T APG IPYG GGSSGVGGGLARFKTLAQETQEE+HKKQQE R GSGRG+SS G  IR+ T RG     +NFL+PSSLMG  PN  TP DDSP SS AYTFTPPSSAAPPSY+NW TGPSTAAGRKRPRAPSTATAA         VRSVGGGNLSADVSGARTWGSLA+GSRGRAG    XXXXXXXXXXXXXXXXXXXXXXXXXX             K             P PRRYKLDDFAGADDVCFNAA                            ASSEGLAIFLERCE SGVASLSVLWADLTTSFSAMTVKSCLPSQSCFRWNCACGR+         L  A       +  +   AS  +  ESDTSGCSQE+DF EGEMYLLPLGACVGEDKEAAEAAGY LPLDCE                                   VALMPLIAW RRPESR FLARSAA                  XXXXXXXXXX        +STKHHTTVS LFDTRVAAWM DTGKADKALEFEALCVSWLKGEGS+A       G NARSGDGGR PAIVAAVVHAEGCCRRNLALAGKISAELEGAKMLAACEQVEMP +PVLAGMEVSGVVFLP+RVTRFSNALGNHLEGLKRTAV AVGGRDFNLASPDQA
Sbjct:    1 MEKFRRPLWPDDHRFGASGIGAGGERGHGKGPGTASDRHISQSFANARTSQHSSPFLHTPTSGPRGTGGGMVSFSPALSRASSTMMTPVQQTQQQPGGFSMFGGKAYSTPASHGSISSQPPLSSHTPIDSNTRTVAPGTIPYGSGGSSGVGGGLARFKTLAQETQEEDHKKQQERRGGSGRGNSS-GCGIRDSTVRGMPSPSSNFLAPSSLMGSPPNSLTPCDDSPFSSAAYTFTPPSSAAPPSYSNWPTGPSTAAGRKRPRAPSTATAALGRPMTPGTVRSVGGGNLSADVSGARTWGSLAEGSRGRAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKXXXXXXXXXXXXSPTPRRYKLDDFAGADDVCFNAASTVQTSTMGRLPPYPATSPAVILPRNSAASSEGLAIFLERCEVSGVASLSVLWADLTTSFSAMTVKSCLPSQSCFRWNCACGRQG--------LCYAFFRGVDPSPSLLTCASAAR-TESDTSGCSQEDDFEEGEMYLLPLGACVGEDKEAAEAAGYHLPLDCE-----------------------------------VALMPLIAWRRRPESRTFLARSAAAAAEGGSDRDGHEPSVDSXXXXXXXXXXH-------VSTKHHTTVSRLFDTRVAAWMTDTGKADKALEFEALCVSWLKGEGSDAVHKPDAEGVNARSGDGGRLPAIVAAVVHAEGCCRRNLALAGKISAELEGAKMLAACEQVEMPTVPVLAGMEVSGVVFLPERVTRFSNALGNHLEGLKRTAVKAVGGRDFNLASPDQA 761          
BLAST of mRNA_E-fasciculatus_F_contig1375.2768.1 vs. uniprot
Match: G1WJW8_9ACTN (DNA polymerase I n=3 Tax=Collinsella tanakaei TaxID=626935 RepID=G1WJW8_9ACTN)

HSP 1 Score: 61.6 bits (148), Expect = 6.030e-6
Identity = 47/152 (30.92%), Postives = 79/152 (51.97%), Query Frame = 0
Query:  667 LFDTRVAAWMADTGKADKALEFEA--LCVSWLKGEGSEAAGANARSGDGGRSPAIVAAVVHAEGCCRRNLALAGKISAELEGAKMLAACEQVEMPAIPVLAGMEVSGVVFLPDRVTRFSNALGNHLEGLKRTAVDAVGGRDFNLASPDQANN 816
            +FDT VAA++ D+ ++    EF+A  L  ++L      A G +  + D   + A  AAV         ++A+   + A +E    +    Q+EMP +PVLAGME +G++  PDR+   S+ LG  ++ L     +  G   FN++SP Q ++
Sbjct:  459 VFDTTVAAYLLDSIRS----EFDAAYLADTYLSSGLPAARGEDGAAEDAPTAAARYAAV---------SVAVREALQAAMERDSDIDVFTQIEMPLVPVLAGMERAGMLVDPDRLKALSDQLGGQIDALAARIRELAGDETFNISSPMQLSH 597          
BLAST of mRNA_E-fasciculatus_F_contig1375.2768.1 vs. uniprot
Match: A0A7S2WV29_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WV29_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 9.260e-6
Identity = 36/93 (38.71%), Postives = 49/93 (52.69%), Query Frame = 0
Query:  398 TSQPPPIPRRYKLDDFAGADDVCFNAAASSEGLAIFLERCEA-----SGVASLSVLWAD--LTTSFSAMTVKSCLPSQSCFRWNCACGRKPRA 483
            T+  PP+    K D F G D        S E  A  LE+ E+     SG+  + ++W D  L+T+FS +  K C P   CF+WNC CGR+PRA
Sbjct:   59 TTSAPPV--TIKPDFFQGMDSD-----PSIENAACCLEKLESWINAESGLVHIGIMWRDQDLSTNFSTVGKKYCTPKWPCFKWNCTCGRRPRA 144          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1375.2768.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FK42_ECTSI0.000e+080.94DNA-directed DNA polymerase n=1 Tax=Ectocarpus sil... [more]
A0A6H5J5W8_9PHAE6.060e-31570.85POLAc domain-containing protein n=1 Tax=Ectocarpus... [more]
G1WJW8_9ACTN6.030e-630.92DNA polymerase I n=3 Tax=Collinsella tanakaei TaxI... [more]
A0A7S2WV29_9STRA9.260e-638.71Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 631..654
NoneNo IPR availablePANTHERPTHR10133:SF27DNA POLYMERASE THETAcoord: 641..815
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 649..768
e-value: 4.0E-7
score: 31.9
IPR002298DNA polymerase APANTHERPTHR10133DNA POLYMERASE Icoord: 641..815

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1375contigE-fasciculatus_F_contig1375:2010..8307 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1375.2768.1mRNA_E-fasciculatus_F_contig1375.2768.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig1375 384..8992 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig1375.2768.1 ID=prot_E-fasciculatus_F_contig1375.2768.1|Name=mRNA_E-fasciculatus_F_contig1375.2768.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=817bp
MHSNTRPEAVWNLVPPGRPPSGPALHAQAKNRPFALLKSLEPPRGPDFFP
MEKFRRPLWPDGDRVGASGIGTGSERGHGKGPGTASDRHVSQAFANARTS
QDSSLYLHTPTSGPRGAGGAMAPFSPALSRASSTMMTPVQRTQQQPEGFS
MFGGKAYSTPASHGSDSSQPPLSSHTPIGSNTPTAAPGMIPYGGGGSSGV
GGGLARFKTLAQETQEEEHKKQQEIRRGSGRGDSSSGHPIRNPTARGTNF
LSPSSLMGPTPNFFTPFDDSPSSSTAYTFTPPSSAAPPSYANWSTGPSTA
AGRKRPRAPSTATAAVRSVGGGNLSADVSGARTWGSLADGSRGRAGQVQQ
QQQHRQPSPRPAARGASAAAARAGAANSVSSRSPRPARNKSPSQSPRTSQ
PPPIPRRYKLDDFAGADDVCFNAAASSEGLAIFLERCEASGVASLSVLWA
DLTTSFSAMTVKSCLPSQSCFRWNCACGRKPRAQQATAPLLGAVVYLPGK
AERVAWGASTDKGAESDTSGCSQEEDFVEGEMYLLPLGACVGEDKEAAEA
AGYQLPLDCETSYDERWAAFAKLVALPVKKVVFNAQARSKRRTIGVALMP
LIAWMRRPESRPFLARSAAAAAEGGSDRGGLETKDDAAQQQQQQQQQQQQ
QQQQHLSTKHHTTVSGLFDTRVAAWMADTGKADKALEFEALCVSWLKGEG
SEAAGANARSGDGGRSPAIVAAVVHAEGCCRRNLALAGKISAELEGAKML
AACEQVEMPAIPVLAGMEVSGVVFLPDRVTRFSNALGNHLEGLKRTAVDA
VGGRDFNLASPDQANN*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002298DNA_polymerase_A
IPR036397RNaseH_sf