mRNA_E-fasciculatus_F_contig1375.2768.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1375.2768.1 vs. uniprot
Match: D7FK42_ECTSI (DNA-directed DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK42_ECTSI) HSP 1 Score: 1090 bits (2819), Expect = 0.000e+0 Identity = 674/854 (78.92%), Postives = 701/854 (82.08%), Query Frame = 2
Query: 179 MHSNTRPEAVWNLVPPGRPPSGPALHAQAKNRPFALLKSLEPPRGPDFFPMEKFRRPLWPDGDRVGASGIGTGSERGHGKGPGTASDRHVSQAFANARTSQDSSLYLHTPTSGPRGAGGAMAPFSPALSRASSTMMTPVQRTQQQPEGFSMFGGKAYSTPASHGSDSSQPPLSSHTXXXXXXPTAAPGMIPYGGGGSSGVGGGLARFKTLAQETQEEEHKKQQEIRRGSGRGDSSSGHPIRNPTARG-----TNFLSPSSLMGPTPNFFTPFDDSPSSSTAYTFTPPSSAAPPSYANWSTGPSTAAGRKRPRAPSTATAA---------VRSVGGGNLSADVSGARTWGSLADGSRGRAGQVQQXXXXXXXXXXXXXXXXXXXXXXXXXXNSVSS--RSPRPARNKSPSQSPRTSQPPPIPRRYKLDDFAGADDVCFNAAASSEGLAIFLERCEASGVASLSVLWADLTTSFSAMTVKSCLPSQSCFRWNCACGRKPRAQQATAPLLGAVVYLPGKAERVAWGASTDKGAESDTSGCSQEEDFVEGEMYLLPLGACVGEDKEAAEAAGYQLPLDCETSYDERWAAFAKLVALPVKKVVFNAQARSKRRTIGVALMPLIAWMRRPESRPFLARSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSTKHHTTVSGLFDTRVAAWMADTGKADKALEFEALCVSWLKGEGSEAAGANARSGDGGRSPAIVAAVVHAEGCCRRNLALAGKISAELEGAKMLAACEQVEMPAIPVLAGMEVSGVVFLPDRVTRFSNALGNHLEGLKRTAVDAVGGRDFNLASPDQANN*RIWERMKRAGWLTSSSSISSS 2692
MHSNTRPEAVWNLVPPGRPPSGPALH QAKNRPFALLKSLEPPRGPD+FPME FRRPLWPD DRVGASGIG G TASDRH+SQA ANARTSQ SS +LHTPTSGPRG G MA FSPALSRAS+TMMTPVQ+TQQ+PEGFSMFGGKAYSTPASHGS SQPPLSSHT PT APG IPYGGGGSSGVGGGLARFKTL QETQ GRG SSSG IR+ TARG +NFLSPSSLMG PN TP DDSPSSS AY FTP S GP TAAGRKRPRAPSTATAA V SVGGGNLSADVSGARTWGSLA+GSRGRA XXXXXXXXXXXXXXXXXXXXXXXXXX RSPRPARNKSPSQSPRTSQPPP PRRYKLDDFAGADDVCFNAAASSEGLAIFLERCEASGVASLSVLWADLTTSFSAMTVKSCLPSQSCFRWNCACGR+PRAQQATAP++GAVVYLPG+AER+AWGAS G ESDTSGCSQE+DF EGEMYLLPL ACVGEDKEAA+AAGY LPLDCETSYDERWAAFAKLVALPVKKV ALMPLIAW RRPESR FLARSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXX LSTKHHTTVSGLFDTRVAAWM DTGKADKALEFEALCVSWLKGEGS+A G NA SGDGGR PAIVAAV AEGCCRRNLALAGKISAELEGAKMLAACEQVEMPAIPVLAGMEVSGVVFLP+RVTRFS+ALGNHLEGLKRTAV AVGGRDFNLASPDQ + +++ +K + S+ +S
Sbjct: 1 MHSNTRPEAVWNLVPPGRPPSGPALHTQAKNRPFALLKSLEPPRGPDYFPMENFRRPLWPDDDRVGASGIGAGXXXXXXXXXXTASDRHISQA-ANARTSQHSSPHLHTPTSGPRGTGRGMASFSPALSRASTTMMTPVQQTQQKPEGFSMFGGKAYSTPASHGSICSQPPLSSHTPIGSNTPTVAPGTIPYGGGGSSGVGGGLARFKTLVQETQXXXXXXXXXXXXXXGRGGSSSGCGIRDSTARGMPSPSSNFLSPSSLMGSPPNALTPCDDSPSSSAAYAFTPSSXXXXXXXXXXXXGPLTAAGRKRPRAPSTATAALGRPMTPGTVLSVGGGNLSADVSGARTWGSLAEGSRGRAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSPRPARNKSPSQSPRTSQPPPTPRRYKLDDFAGADDVCFNAAASSEGLAIFLERCEASGVASLSVLWADLTTSFSAMTVKSCLPSQSCFRWNCACGRQPRAQQATAPMIGAVVYLPGRAERIAWGASA--GTESDTSGCSQEDDFEEGEMYLLPLAACVGEDKEAAKAAGYHLPLDCETSYDERWAAFAKLVALPVKKV---------------ALMPLIAWRRRPESRTFLARSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXH-------LSTKHHTTVSGLFDTRVAAWMTDTGKADKALEFEALCVSWLKGEGSDAEGVNAGSGDGGRLPAIVAAVARAEGCCRRNLALAGKISAELEGAKMLAACEQVEMPAIPVLAGMEVSGVVFLPERVTRFSDALGNHLEGLKRTAVKAVGGRDFNLASPDQVAD-VLFKHLKLPSPPVKAGSVHAS 828
BLAST of mRNA_E-fasciculatus_F_contig1375.2768.1 vs. uniprot
Match: A0A6H5J5W8_9PHAE (POLAc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5W8_9PHAE) HSP 1 Score: 902 bits (2331), Expect = 8.260e-316 Identity = 582/832 (69.95%), Postives = 607/832 (72.96%), Query Frame = 2
Query: 329 MEKFRRPLWPDGDRVGASGIGTGSERGHGKGPGTASDRHVSQAFANARTSQDSSLYLHTPTSGPRGAGGAMAPFSPALSRASSTMMTPVQRTQQQPEGFSMFGGKAYSTPASHGSDSSQPPLSSHTXXXXXXPTAAPGMIPYGGGGSSGVGGGLARFKTLAQETQEEEHKKQQEIRRGSGRGDSSSGHPIRNPTARG-----TNFLSPSSLMGPTPNFFTPFDDSPSSSTAYTFTPPSSAAPPSYANWSTGPSTAAGRKRPRAPSTATAA---------VRSVGGGNLSADVSGARTWGSLADGSRGRAGQVQQXXXXXXXXXXXXXXXXXXXXXXXXXXNSVSSRSPRPARNKSPSQSPRTSQPP-PIPRRYKLDDFAGADDVCFNAA----------------------------ASSEGLAIFLERCEASGVASLSVLWADLTTSFSAMTVKSCLPSQSCFRWNCACGRKPRAQQATAPLLGAVVYLPGKAERVAWGASTDKGAESDTSGCSQEEDFVEGEMYLLPLGACVGEDKEAAEAAGYQLPLDCETSYDERWAAFAKLVALPVKKVVFNAQARSKRRTIGVALMPLIAWMRRPESRPFLARSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSTKHHTTVSGLFDTRVAAWMADTGKADKALEFEALCVSWLKGEGSEAA------GANARSGDGGRSPAIVAAVVHAEGCCRRNLALAGKISAELEGAKMLAACEQVEMPAIPVLAGMEVSGVVFLPDRVTRFSNALGNHLEGLKRTAVDAVGGRDFNLASPDQANN*RIWERMKRAGWLTSSS 2677
MEKFRRPLWPD R GASGIG G ERGHGKGPGTASDRH+SQ+FANARTSQ SS +LHTPTSGPRG GG M FSPALSRASSTMMTPVQ+TQQQP GFSMFGGKAYSTPASHGS SSQPPLSSHT T APG IPYG GGSSGVGGGLARFKTLAQETQEE+HKKQQE R GSGRG+SS G IR+ T RG +NFL+PSSLMG PN TP DDSP SS AYTFTPPSSAAPPSY+NW TGPSTAAGRKRPRAPSTATAA VRSVGGGNLSADVSGARTWGSLA+GSRGRAG XXXXXXXXXXXXXXXXXXXXXXXXXX K P PRRYKLDDFAGADDVCFNAA ASSEGLAIFLERCE SGVASLSVLWADLTTSFSAMTVKSCLPSQSCFRWNCACGR+ L A + + AS + ESDTSGCSQE+DF EGEMYLLPLGACVGEDKEAAEAAGY LPLDCE VALMPLIAW RRPESR FLARSAA XXXXXXXXXX +STKHHTTVS LFDTRVAAWM DTGKADKALEFEALCVSWLKGEGS+A G NARSGDGGR PAIVAAVVHAEGCCRRNLALAGKISAELEGAKMLAACEQVEMP +PVLAGMEVSGVVFLP+RVTRFSNALGNHLEGLKRTAV AVGGRDFNLASPDQA +I +RM++ G + SS
Sbjct: 1 MEKFRRPLWPDDHRFGASGIGAGGERGHGKGPGTASDRHISQSFANARTSQHSSPFLHTPTSGPRGTGGGMVSFSPALSRASSTMMTPVQQTQQQPGGFSMFGGKAYSTPASHGSISSQPPLSSHTPIDSNTRTVAPGTIPYGSGGSSGVGGGLARFKTLAQETQEEDHKKQQERRGGSGRGNSS-GCGIRDSTVRGMPSPSSNFLAPSSLMGSPPNSLTPCDDSPFSSAAYTFTPPSSAAPPSYSNWPTGPSTAAGRKRPRAPSTATAALGRPMTPGTVRSVGGGNLSADVSGARTWGSLAEGSRGRAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKXXXXXXXXXXXXSPTPRRYKLDDFAGADDVCFNAASTVQTSTMGRLPPYPATSPAVILPRNSAASSEGLAIFLERCEVSGVASLSVLWADLTTSFSAMTVKSCLPSQSCFRWNCACGRQG--------LCYAFFRGVDPSPSLLTCASAAR-TESDTSGCSQEDDFEEGEMYLLPLGACVGEDKEAAEAAGYHLPLDCE-----------------------------------VALMPLIAWRRRPESRTFLARSAAAAAEGGSDRDGHEPSVDSXXXXXXXXXXH-------VSTKHHTTVSRLFDTRVAAWMTDTGKADKALEFEALCVSWLKGEGSDAVHKPDAEGVNARSGDGGRLPAIVAAVVHAEGCCRRNLALAGKISAELEGAKMLAACEQVEMPTVPVLAGMEVSGVVFLPERVTRFSNALGNHLEGLKRTAVKAVGGRDFNLASPDQAKKQQIGKRMQQ-GRIDGSS 779
BLAST of mRNA_E-fasciculatus_F_contig1375.2768.1 vs. uniprot
Match: G1WJW8_9ACTN (DNA polymerase I n=3 Tax=Collinsella tanakaei TaxID=626935 RepID=G1WJW8_9ACTN) HSP 1 Score: 62.8 bits (151), Expect = 3.240e-6 Identity = 47/152 (30.92%), Postives = 79/152 (51.97%), Query Frame = 2
Query: 2177 LFDTRVAAWMADTGKADKALEFEA--LCVSWLKGEGSEAAGANARSGDGGRSPAIVAAVVHAEGCCRRNLALAGKISAELEGAKMLAACEQVEMPAIPVLAGMEVSGVVFLPDRVTRFSNALGNHLEGLKRTAVDAVGGRDFNLASPDQANN 2626
+FDT VAA++ D+ ++ EF+A L ++L A G + + D + A AAV ++A+ + A +E + Q+EMP +PVLAGME +G++ PDR+ S+ LG ++ L + G FN++SP Q ++
Sbjct: 459 VFDTTVAAYLLDSIRS----EFDAAYLADTYLSSGLPAARGEDGAAEDAPTAAARYAAV---------SVAVREALQAAMERDSDIDVFTQIEMPLVPVLAGMERAGMLVDPDRLKALSDQLGGQIDALAARIRELAGDETFNISSPMQLSH 597
BLAST of mRNA_E-fasciculatus_F_contig1375.2768.1 vs. uniprot
Match: A0A7S2WV29_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WV29_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 1.080e-5 Identity = 36/93 (38.71%), Postives = 49/93 (52.69%), Query Frame = 2
Query: 1370 TSQPPPIPRRYKLDDFAGADDVCFNAAASSEGLAIFLERCEA-----SGVASLSVLWAD--LTTSFSAMTVKSCLPSQSCFRWNCACGRKPRA 1627
T+ PP+ K D F G D S E A LE+ E+ SG+ + ++W D L+T+FS + K C P CF+WNC CGR+PRA
Sbjct: 59 TTSAPPV--TIKPDFFQGMDSD-----PSIENAACCLEKLESWINAESGLVHIGIMWRDQDLSTNFSTVGKKYCTPKWPCFKWNCTCGRRPRA 144 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1375.2768.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1375.2768.1 >prot_E-fasciculatus_F_contig1375.2768.1 ID=prot_E-fasciculatus_F_contig1375.2768.1|Name=mRNA_E-fasciculatus_F_contig1375.2768.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=817bp MHSNTRPEAVWNLVPPGRPPSGPALHAQAKNRPFALLKSLEPPRGPDFFPback to top mRNA from alignment at E-fasciculatus_F_contig1375:384..8992- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1375.2768.1 ID=mRNA_E-fasciculatus_F_contig1375.2768.1|Name=mRNA_E-fasciculatus_F_contig1375.2768.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=8609bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1375:384..8992- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1375:384..8992- >mRNA_E-fasciculatus_F_contig1375.2768.1 ID=mRNA_E-fasciculatus_F_contig1375.2768.1|Name=mRNA_E-fasciculatus_F_contig1375.2768.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=4902bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1375:384..8992- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |