mRNA_E-fasciculatus_F_contig13746.2767.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13746.2767.1
Unique NamemRNA_E-fasciculatus_F_contig13746.2767.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13746.2767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13746contigE-fasciculatus_F_contig13746:2832..3546 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size717
Cds size522
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927868.0694427-UTR-E-fasciculatus_F_contig13746:2831..30241622927868.0694427-UTR-E-fasciculatus_F_contig13746:2831..3024Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13746 2832..3024 +
1695995730.7628574-UTR-E-fasciculatus_F_contig13746:2831..30241695995730.7628574-UTR-E-fasciculatus_F_contig13746:2831..3024Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13746 2832..3024 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927868.08805-CDS-E-fasciculatus_F_contig13746:3024..35461622927868.08805-CDS-E-fasciculatus_F_contig13746:3024..3546Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13746 3025..3546 +
1695995730.7707047-CDS-E-fasciculatus_F_contig13746:3024..35461695995730.7707047-CDS-E-fasciculatus_F_contig13746:3024..3546Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13746 3025..3546 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13746.2767.1prot_E-fasciculatus_F_contig13746.2767.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13746 3025..3546 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13746.2767.1

>prot_E-fasciculatus_F_contig13746.2767.1 ID=prot_E-fasciculatus_F_contig13746.2767.1|Name=mRNA_E-fasciculatus_F_contig13746.2767.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=174bp
MRIAAAGGATGIGGVVEREGLEMTAAAAAVAEAQECQPMGPLTARAHSPP
REGKIGEAAGPHETAAAEEATAETGAAGEGGEAEAGAGAGTREEDKGDGV
FAGGRNAHAREGKAMHCNPNPKRNDAAQAAQQGRQLRRICCASLRKTGLG
GEGERDPLTAFGGSYLPLPPLPLP
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mRNA from alignment at E-fasciculatus_F_contig13746:2832..3546+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13746.2767.1 ID=mRNA_E-fasciculatus_F_contig13746.2767.1|Name=mRNA_E-fasciculatus_F_contig13746.2767.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=715bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13746:2832..3546+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CATAGCTCTCCACCGCTGTCTCAGCCAAAGACTGCCACGTTGATGAGACA
ATTGTGATACGAAGGCCGTCCCCGCCTCCGATTCCTTTTTCTCAAATTGT
TGGAGGTGATATTGATTCCGTGTTGAGCTGTATTTCGAGCAGTAGTCCAA
AGAAGATACCTGGGGCAGTGTAGGATGGACTACGGCCGGAGGGATGCGGA
TCGCGGCAGCCGGGGGCGCGACGGGGATAGGAGGAGTGGTCGAGAGAGAG
GGTCTCGAGATGACAGCCGCGGCAGCAGCAGTCGCCGAAGCGCAGGAGTG
CCAGCCTATGGGGCCGCTTACAGCGAGGGCACATTCTCCTCCTCGAGAGG
GGAAGATCGGCGAGGCGGCCGGTCCCCACGAGACAGCAGCAGCAGAAGAG
GCGACAGCAGAGACAGGAGCAGCAGGCGAGGGAGGGGAAGCAGAAGCAGG
AGCAGGAGCAGGGACGAGAGAGGAGGACAAAGGTGATGGTGTGTTTGCGG
GTGGACGCAACGCACACGCAAGAGAGGGCAAAGCAATGCACTGCAACCCA
AATCCGAAAAGAAACGATGCAGCGCAAGCAGCCCAGCAGGGCAGGCAGCT
GCGGCGGATCTGCTGTGCGTCCTTGCGGAAAACGGGGCTTGGGGGGGAAG
GGGAGAGAGATCCTCTTACCGCGTTCGGGGGATCATATCTCCCTCTTCCT
CCCCTCCCCCTCCCT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13746:2832..3546+

>mRNA_E-fasciculatus_F_contig13746.2767.1 ID=mRNA_E-fasciculatus_F_contig13746.2767.1|Name=mRNA_E-fasciculatus_F_contig13746.2767.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1044bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13746:2832..3546+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCGGATCGCGGCAGCCGGGGGCGCGACGGGGATAGGAGGAGTGGTCGA
GAGAGAGGGTCTCGAGATGACAGCCGCGGCAGCAGCAGTCGCCGAAGCGC
AGGAGTGCCAGCCTATGGGGCCGCTTACAGCGAGGGCACATTCTCCTCCT
CGAGAGGGGAAGATCGGCGAGGCGGCCGGTCCCCACGAGACAGCAGCAGC
AGAAGAGGCGACAGCAGAGACAGGAGCAGCAGGCGAGGGAGGGGAAGCAG
AAGCAGGAGCAGGAGCAGGGACGAGAGAGGAGGACAAAGGTGATGGTGTG
TTTGCGGGTGGACGCAACGCACACGCAAGAGAGGGCAAAGCAATGCACTG
CAACCCAAATCCGAAAAGAAACGATGCAGCGCAAGCAGCCCAGCAGGGCA
GGCAGCTGCGGCGGATCTGCTGTGCGTCCTTGCGGAAAACGGGGCTTGGG
GGGGAAGGGGAGAGAGATCCTCTTACCGCGTTCGGGGGATCATATCTCCC
TCTTCCTCCCCTCCCCCTCCCTATGCGGATCGCGGCAGCCGGGGGCGCGA
CGGGGATAGGAGGAGTGGTCGAGAGAGAGGGTCTCGAGATGACAGCCGCG
GCAGCAGCAGTCGCCGAAGCGCAGGAGTGCCAGCCTATGGGGCCGCTTAC
AGCGAGGGCACATTCTCCTCCTCGAGAGGGGAAGATCGGCGAGGCGGCCG
GTCCCCACGAGACAGCAGCAGCAGAAGAGGCGACAGCAGAGACAGGAGCA
GCAGGCGAGGGAGGGGAAGCAGAAGCAGGAGCAGGAGCAGGGACGAGAGA
GGAGGACAAAGGTGATGGTGTGTTTGCGGGTGGACGCAACGCACACGCAA
GAGAGGGCAAAGCAATGCACTGCAACCCAAATCCGAAAAGAAACGATGCA
GCGCAAGCAGCCCAGCAGGGCAGGCAGCTGCGGCGGATCTGCTGTGCGTC
CTTGCGGAAAACGGGGCTTGGGGGGGAAGGGGAGAGAGATCCTCTTACCG
CGTTCGGGGGATCATATCTCCCTCTTCCTCCCCTCCCCCTCCCT
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