mRNA_E-fasciculatus_F_contig13741.2765.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13741.2765.1
Unique NamemRNA_E-fasciculatus_F_contig13741.2765.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13741.2765.1 vs. uniprot
Match: D8LJQ9_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJQ9_ECTSI)

HSP 1 Score: 213 bits (543), Expect = 6.390e-65
Identity = 164/226 (72.57%), Postives = 175/226 (77.43%), Query Frame = 1 
Query:    1 RKVDDLFNISKELMIVTMLFLVLSVGLECGLYFDVSSWTGSNLNFFITAAAFWVSVVGPLRRLAVDPLAGIKQSRTDRASLARRESRSTMRTASSCVSDSEDVSSSAKATADIRGSSRAVRVASRKLEEGFYGAGVDEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSLYDEPPPANLSPXXXXXXXXXXXXXXXGIHFCTSXXXXXXXXXXXXXXXXXGGEEMV 678
            RKVDDLFNIS+EL+IVT+LFL+L++G++CGLYF+V  WTG NLNFFITAA F VSVVGPLRRLAVDPLAG KQ  T RA LARRE+RS            EDVS SAKATADIRGSSRAVRVASRKLEEGFYG GVDEDXXXXXXXXXXXXXXXXXXXXXXXXX   TSLYDEPPPANLSP               GI+FCTS         XXXXXXXXGGEEMV
Sbjct:  130 RKVDDLFNISRELIIVTILFLILAIGIKCGLYFEVDMWTGGNLNFFITAAVFGVSVVGPLRRLAVDPLAGSKQRCTGRAVLARRETRS------------EDVSYSAKATADIRGSSRAVRVASRKLEEGFYGGGVDEDXXXXXXXXXXXXXXXXXXXXXXXXX---TSLYDEPPPANLSPSPSPGDPGAGNWQYQGINFCTSRGGGADGGRXXXXXXXXGGEEMV 340
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BLAST of mRNA_E-fasciculatus_F_contig13741.2765.1 vs. uniprot
Match: A0A6H5L7K1_9PHAE (RGS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7K1_9PHAE)

HSP 1 Score: 196 bits (499), Expect = 6.970e-57
Identity = 134/202 (66.34%), Postives = 148/202 (73.27%), Query Frame = 1 
Query:    4 KVDDLFNISKELMIVTMLFLVLSVGLECGLYFDVSSWTGSNLNFFITAAAFWVSVVGPLRRLAVDPLAGIKQSRTDRASLARRESRSTMRTASSCVSDSEDVSSSAKATADIRGSSRAVRVASRKLEEGFYGAGVDEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSLYDEPPPANLSPXXXXXXXXXXXXXXXGIHFCTS 609
            KVDDLFNIS+EL+IVT+LFL+L++G++CGLY++V  WTG NLNFFITAA F VSVVGPLR LAVDPLAG KQ   DRA LARR++RS            EDVS SAKATADIRGSSRAVRVASRKLEEG YG GVDE+         XXXXXXXXXXXXXXX    TSLYDEPPPANLSP               GI+FCTS
Sbjct:  102 KVDDLFNISRELIIVTILFLILAIGIKCGLYYEVDMWTGGNLNFFITAAVFGVSVVGPLRLLAVDPLAGSKQRCMDRAVLARRDTRS------------EDVSYSAKATADIRGSSRAVRVASRKLEEGLYGDGVDENDDDGCDTTPXXXXXXXXXXXXXXXA---TSLYDEPPPANLSPSPSPGDPGAGNWQYQGINFCTS 288
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BLAST of mRNA_E-fasciculatus_F_contig13741.2765.1 vs. uniprot
Match: D7G2T7_ECTSI (RGS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2T7_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 2.800e-14
Identity = 58/143 (40.56%), Postives = 81/143 (56.64%), Query Frame = 1 
Query:    1 RKVDDLFNISKELMIVTMLFLVLSV----GLECGLYFDVSSWTGSNLNFFITAAAFWVSVVGPLRRLAVDPLAGIKQSRTDRASLARRESRSTMRTASSCVSDSEDVSSSAKATADIRGSSRAVRVASRKLEEGFYGAGVDED 417
            R VDDLFNISKEL++VT+  + L+V      E G  ++   W G+N++ FI A  F +S+V PLRRLA+DPLA  K++  DR  L+R    ST+RTAS   S      S  +A ++             +LEEG  G  +D+D
Sbjct:  137 RNVDDLFNISKELLLVTVAIVCLAVVQKAAAEWGGVYE-QRWVGNNISIFIAAVLFGISIVDPLRRLAMDPLAATKRNYADRVLLSRTAPDSTVRTASGVSSGRSRDPSRIRANSEEEA----------RLEEGDLGGVLDKD 268
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BLAST of mRNA_E-fasciculatus_F_contig13741.2765.1 vs. uniprot
Match: D7G2T8_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T8_ECTSI)

HSP 1 Score: 68.6 bits (166), Expect = 8.910e-10
Identity = 43/93 (46.24%), Postives = 58/93 (62.37%), Query Frame = 1 
Query:    1 RKVDDLFNISKELMIVTMLFLVLSVGLEC----GLYFDVSSWTGSNLNFFITAAAFWVSVVGPLRRLAVDPLAGIKQSRTDRASLARRESRST 267
            R VDDLFNIS EL+ VT+  +V+++  E     G  F+   W  SN++    A  F +S+V PLRRLA+DPLA  K++  DR  L+R ES ST
Sbjct:  231 RNVDDLFNISTELITVTVTIVVVTIVQEVVDKWGGNFE-QRWLTSNISVVFVAVLFCISIVAPLRRLALDPLAATKRNYADRVLLSRTESHST 322
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BLAST of mRNA_E-fasciculatus_F_contig13741.2765.1 vs. uniprot
Match: D7FTW1_ECTSI (RGS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW1_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 1.470e-6
Identity = 37/96 (38.54%), Postives = 56/96 (58.33%), Query Frame = 1 
Query:    1 RKVDDLFNISKELMIVTMLFLVLSVGLEC-----GLYFDVSSWTGSNLNFFITAAAFWVSVVGPLRRLAVDPLAGIKQSRTDRASLARRESRSTMR 273
            R VDDLF+ISKE++IVT   ++L++         G+Y     W   +++    A  F VS+V PLRRLA DPLA  + +  +R  L+R E  +++R
Sbjct:  108 RNVDDLFSISKEIIIVTAAVVILAIEQNVVDKWGGVY--ERRWIDKSVSILFVAVLFGVSIVDPLRRLAFDPLAATQHNHANRILLSRTEPHNSVR 201
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13741.2765.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LJQ9_ECTSI6.390e-6572.57Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L7K1_9PHAE6.970e-5766.34RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G2T7_ECTSI2.800e-1440.56RGS domain-containing protein n=2 Tax=Ectocarpus T... [more]
D7G2T8_ECTSI8.910e-1046.24RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FTW1_ECTSI1.470e-638.54RGS domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13741contigE-fasciculatus_F_contig13741:51..2321 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons4
Model size684
Cds size684
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13741.2765.1prot_E-fasciculatus_F_contig13741.2765.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13741 51..2321 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927867.9332361-CDS-E-fasciculatus_F_contig13741:50..1231622927867.9332361-CDS-E-fasciculatus_F_contig13741:50..123Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13741 51..123 +
1695995730.7084336-CDS-E-fasciculatus_F_contig13741:50..1231695995730.7084336-CDS-E-fasciculatus_F_contig13741:50..123Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13741 51..123 +
1622927867.947001-CDS-E-fasciculatus_F_contig13741:485..5761622927867.947001-CDS-E-fasciculatus_F_contig13741:485..576Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13741 486..576 +
1695995730.7157612-CDS-E-fasciculatus_F_contig13741:485..5761695995730.7157612-CDS-E-fasciculatus_F_contig13741:485..576Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13741 486..576 +
1622927867.9598749-CDS-E-fasciculatus_F_contig13741:864..9631622927867.9598749-CDS-E-fasciculatus_F_contig13741:864..963Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13741 865..963 +
1695995730.7234075-CDS-E-fasciculatus_F_contig13741:864..9631695995730.7234075-CDS-E-fasciculatus_F_contig13741:864..963Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13741 865..963 +
1622927867.9702334-CDS-E-fasciculatus_F_contig13741:1900..23211622927867.9702334-CDS-E-fasciculatus_F_contig13741:1900..2321Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13741 1901..2321 +
1695995730.7312307-CDS-E-fasciculatus_F_contig13741:1900..23211695995730.7312307-CDS-E-fasciculatus_F_contig13741:1900..2321Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13741 1901..2321 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13741.2765.1

>prot_E-fasciculatus_F_contig13741.2765.1 ID=prot_E-fasciculatus_F_contig13741.2765.1|Name=mRNA_E-fasciculatus_F_contig13741.2765.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=228bp
RKVDDLFNISKELMIVTMLFLVLSVGLECGLYFDVSSWTGSNLNFFITAA
AFWVSVVGPLRRLAVDPLAGIKQSRTDRASLARRESRSTMRTASSCVSDS
EDVSSSAKATADIRGSSRAVRVASRKLEEGFYGAGVDEDDDDDDDSCDTT
PTAPTPAAVAAAIAAVATSLYDEPPPANLSPSPSPGNPGAGNWQYQGIHF
CTSRGAGGGGGGGGGGRGRGGGEEMVEA
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mRNA from alignment at E-fasciculatus_F_contig13741:51..2321+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13741.2765.1 ID=mRNA_E-fasciculatus_F_contig13741.2765.1|Name=mRNA_E-fasciculatus_F_contig13741.2765.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2271bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13741:51..2321+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGAAGGTGGACGACCTCTTCAACATCAGCAAGGAGCTCATGATCGTCAC
GATGTTGTTCCTCGTTCTTTCCGGTAAGTTTCTTCTGCGGCCGGGCGGGC
GCTTCGGAATCTCGGCACAACGATAGTCGTCGTCGTCGTCGTCGTCGTTG
TGTTTTCGGGGGGCCCCGTGGAATCGTGGCGCCGGCGTCGTAAGGAAGTG
CCTGCTGTACGTGTTTTTGTTTCCTTTGTCATTCCTTGGTTGTGATCTTG
CTTGTGTCTTTCTTTGACAGCCTTGTTTTAGTCCATAGCCGTTCCTTCCG
CAAAGCCTTCGCTTCCCTGTGTTGGCTAAGAACACGTTATTTTGCTGCGG
GCCAATTTTTTTGTCAGCACCGCCAACCCACACGCATGTACACCCCCGCC
CTATCCCCCCGCCGTGTATGGTCGTGTTGTCTCAGTCGGACTCGAGTGCG
GGCTGTATTTCGACGTGAGCAGTTGGACGGGGAGCAACCTCAATTTCTTC
ATAACGGCTGCGGCGTTCTGGGTCAGGTGGGTCGAGGAGAGAGAGCCAGC
CGTCGAGAGACACACATAGCCAGAAAAACACCAAATGTGCGTGCCAGAGA
GACAACAATCGGAACAGTAAATAGGCGCATGGTTATGCAGTACTGTAGCA
TGGCGCCGCTCCGCGCTGCCGCCGAGGTACTGCGGCGAAGAAAGCTGGAT
TGGAACGATGCTTGTGCTGACAGGATACGTACCCGCGCTCATCATGCAAC
ACATGCTCCAACACCACCACCACCACCACCACCACCACCTTGCCTGACCC
CGACACCCACGCAGCGTGGTGGGCCCGCTGCGTCGTCTCGCGGTTGACCC
CCTGGCGGGGATCAAGCAGAGCCGCACGGATAGAGCGTCACTCGCCCGCC
GGGAAAGCCGGAGGTAAGTACGTCATGAGTAGCTACGTGCGTGTGATGGC
GTGGGCATGTTTATGTGCGTGTACGCGCGTGTCATAGTACCGACCGTGCA
GACGGGGCTGGTGGTGGCCGCGGGATTGGGTAGCCCGCTAGTCTTCAATG
GCGGGAAGTTGGTCTTTAATTTTGTGTGAAGTAAAGCGCAAGATTTGCAA
GAACGCATGCTCATTCTCGGGATCCAACGGGGTGGGCGGGGGAGGTTCGT
GTTGTTTTTCTGGTTGTGTGTTTTGGACATGGCATCGACCGCCGCCCCTG
CTGTCTTCCGTGTATCCATCTCTCTCTTTCGGAGGGCGTTGTCCATGCGA
TGTCGGAGTAACGAGCATGAACATTCCAGTATCTGAGCGTGTGATGTGGA
GAACGGAAACGATTTCGTTGTCTACGATCGGTCGATTCGACGGCAGTGTT
CGGGAGAGAGAAGGCGGATGGATGAGAAGAGGGGGGCGTACGAGTGTTGA
TGCATCATGTAAGAGGGGCAGAGAGAGCCAAGGCGAACAACATGGACAGC
TCATGCTGACGGCACCGACACCCATGCGATGGCCGTGTATTGTGTCGTTA
TTGCCAATAGTATTGCCAATAGTCTAGCTTCCAAGAACGAAAGGAGCATC
CTATTAATAGACTACATCGCCAGTGCTTTACCTGGGCCCACCCCCACCCC
CACCCCCACCATGCACAGTTGAAACTTCGTTTCGCGCTTGGTGCCGTACG
AGCTTGACCCCGGTGACGCATGCTCCGCCCCAGCACTGGAAGTTGGATCG
AATGTCTGCGGCATGCATGACTGCTGTGAGTCTCCCCCCGCCCCCCTCTT
CCAACGCTCGGATCCCCCTCCCTTGTCTCTCCGCCCTTTGCGCGCCCGCC
CCGTCACATCTCGGCCACCATCACCACAACCATTGCCGGCCCAAAAAAAG
TACGATGCGAACGGCCTCTTCGTGCGTCTCCGACAGCGAGGACGTCTCCT
CCTCTGCGAAGGCCACCGCCGACATCCGGGGAAGCAGCAGGGCGGTCAGG
GTGGCGAGCAGGAAGCTGGAGGAAGGGTTTTACGGCGCCGGAGTCGACGA
AGACGACGACGATGACGACGACAGTTGTGATACCACGCCGACCGCGCCCA
CGCCGGCGGCGGTCGCGGCAGCGATAGCAGCGGTGGCGACCTCGTTGTAC
GACGAGCCACCACCAGCGAACCTCTCACCCTCGCCGTCTCCGGGGAATCC
CGGTGCGGGAAACTGGCAGTACCAGGGTATACACTTTTGCACAAGTCGAG
GGGCGGGCGGCGGAGGTGGGGGAGGCGGTGGGGGTAGGGGTAGGGGCGGG
GGGGAGGAGATGGTGGAGGCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13741:51..2321+

>mRNA_E-fasciculatus_F_contig13741.2765.1 ID=mRNA_E-fasciculatus_F_contig13741.2765.1|Name=mRNA_E-fasciculatus_F_contig13741.2765.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1368bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13741:51..2321+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGAAGGTGGACGACCTCTTCAACATCAGCAAGGAGCTCATGATCGTCAC
GATGTTGTTCCTCGTTCTTTCCGAGGAAGGTGGACGACCTCTTCAACATC
AGCAAGGAGCTCATGATCGTCACGATGTTGTTCCTCGTTCTTTCCGTCGG
ACTCGAGTGCGGGCTGTATTTCGACGTGAGCAGTTGGACGGGGAGCAACC
TCAATTTCTTCATAACGGCTGCGGCGTTCTGGGTCAGTCGGACTCGAGTG
CGGGCTGTATTTCGACGTGAGCAGTTGGACGGGGAGCAACCTCAATTTCT
TCATAACGGCTGCGGCGTTCTGGGTCAGCGTGGTGGGCCCGCTGCGTCGT
CTCGCGGTTGACCCCCTGGCGGGGATCAAGCAGAGCCGCACGGATAGAGC
GTCACTCGCCCGCCGGGAAAGCCGGAGCGTGGTGGGCCCGCTGCGTCGTC
TCGCGGTTGACCCCCTGGCGGGGATCAAGCAGAGCCGCACGGATAGAGCG
TCACTCGCCCGCCGGGAAAGCCGGAGTACGATGCGAACGGCCTCTTCGTG
CGTCTCCGACAGCGAGGACGTCTCCTCCTCTGCGAAGGCCACCGCCGACA
TCCGGGGAAGCAGCAGGGCGGTCAGGGTGGCGAGCAGGAAGCTGGAGGAA
GGGTTTTACGGCGCCGGAGTCGACGAAGACGACGACGATGACGACGACAG
TTGTGATACCACGCCGACCGCGCCCACGCCGGCGGCGGTCGCGGCAGCGA
TAGCAGCGGTGGCGACCTCGTTGTACGACGAGCCACCACCAGCGAACCTC
TCACCCTCGCCGTCTCCGGGGAATCCCGGTGCGGGAAACTGGCAGTACCA
GGGTATACACTTTTGCACAAGTCGAGGGGCGGGCGGCGGAGGTGGGGGAG
GCGGTGGGGGTAGGGGTAGGGGCGGGGGGGAGGAGATGGTGGAGGCGTAC
GATGCGAACGGCCTCTTCGTGCGTCTCCGACAGCGAGGACGTCTCCTCCT
CTGCGAAGGCCACCGCCGACATCCGGGGAAGCAGCAGGGCGGTCAGGGTG
GCGAGCAGGAAGCTGGAGGAAGGGTTTTACGGCGCCGGAGTCGACGAAGA
CGACGACGATGACGACGACAGTTGTGATACCACGCCGACCGCGCCCACGC
CGGCGGCGGTCGCGGCAGCGATAGCAGCGGTGGCGACCTCGTTGTACGAC
GAGCCACCACCAGCGAACCTCTCACCCTCGCCGTCTCCGGGGAATCCCGG
TGCGGGAAACTGGCAGTACCAGGGTATACACTTTTGCACAAGTCGAGGGG
CGGGCGGCGGAGGTGGGGGAGGCGGTGGGGGTAGGGGTAGGGGCGGGGGG
GAGGAGATGGTGGAGGCG
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