mRNA_E-fasciculatus_F_contig13735.2762.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13735.2762.1
Unique NamemRNA_E-fasciculatus_F_contig13735.2762.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13735.2762.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13735contigE-fasciculatus_F_contig13735:2255..3385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size285
Cds size264
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13735.2762.1prot_E-fasciculatus_F_contig13735.2762.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13735 2274..3385 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927867.4323592-UTR-E-fasciculatus_F_contig13735:2254..22731622927867.4323592-UTR-E-fasciculatus_F_contig13735:2254..2273Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13735 2255..2273 +
1695995730.5294652-UTR-E-fasciculatus_F_contig13735:2254..22731695995730.5294652-UTR-E-fasciculatus_F_contig13735:2254..2273Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13735 2255..2273 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927867.4602528-CDS-E-fasciculatus_F_contig13735:2273..25041622927867.4602528-CDS-E-fasciculatus_F_contig13735:2273..2504Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13735 2274..2504 +
1695995730.538395-CDS-E-fasciculatus_F_contig13735:2273..25041695995730.538395-CDS-E-fasciculatus_F_contig13735:2273..2504Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13735 2274..2504 +
1622927867.478972-CDS-E-fasciculatus_F_contig13735:3352..33851622927867.478972-CDS-E-fasciculatus_F_contig13735:3352..3385Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13735 3353..3385 +
1695995730.5479395-CDS-E-fasciculatus_F_contig13735:3352..33851695995730.5479395-CDS-E-fasciculatus_F_contig13735:3352..3385Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13735 3353..3385 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13735.2762.1

>prot_E-fasciculatus_F_contig13735.2762.1 ID=prot_E-fasciculatus_F_contig13735.2762.1|Name=mRNA_E-fasciculatus_F_contig13735.2762.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=88bp
MFNRLLIATKCLACHEVVRVGSFVLPLFVLLSIPIISLSFPTRTQQPPYL
GGVNPSRRRSFCTALAAAAMDRQGDCKPGDGAEEEAPR
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mRNA from alignment at E-fasciculatus_F_contig13735:2255..3385+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13735.2762.1 ID=mRNA_E-fasciculatus_F_contig13735.2762.1|Name=mRNA_E-fasciculatus_F_contig13735.2762.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1131bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13735:2255..3385+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTGTGTGTGTTCCCCATGCATGTTCAACCGGCTTCTGATTGCGACGAAGT
GCCTCGCCTGCCACGAAGTAGTTCGAGTGGGTAGTTTTGTCTTGCCCCTC
TTTGTGCTGCTGTCAATCCCCATCATCTCTCTCTCCTTCCCTACACGTAC
GCAACAACCGCCGTATCTGGGGGGCGTCAACCCATCTCGCCGTCGAAGTT
TCTGCACTGCCCTCGCCGCGGCTGCTATGGATAGGCAAGGAGATTGCAAG
GTGTGCGCAGCAAGGTAGAAGCAGATTACACGGTTTTGCTTGTGTCGCGA
TTTTGTGACCTGTTGTGAGAGAGCGGTAGGATTGTTACATGAGGGTGCAG
TTAATCTCTCTCTCTCTCTTCTCTCTCTCTCTCTCTCTCTCGGCGATTGC
TTGGCTGCTTTTAGCTGCAAGACACTACCTATATCGAGCGCTAGTAGTCC
ACCCGCCCGAGACATCATCATTCCCGCTGAAAAACAAAGTGCCTCCGCTG
GATTTCTGGATTGCTGCACGAGTCTCTGGTTGTCTTGGTTTTCCCATGAC
AATTGTACACCGCAGTAGAGAGAGATGGATTCGTCGTTGTCTGATACAGA
ATACTGCTGTGGAAGGTATCTACGAAGATTACAGTGAAGTGGTTTTTGGC
GTTTGCGCATACGTCTATCTCGTGCGAAACCGCGCAGCAGTGCATGTGTT
TTTATCATTCATAAATTTTGTCACACTGCTCTACATACATACGTATTAGG
CAACAAGTTCTACTCCACGGTCGACGAGGGACAGACAGGTTCATGCACTC
ACAAAGAAGACTCATCTTTGCCCCCGCGAAATACGCAGCAACACAGCAGC
AGACAGTCGCTAGGGGTTGTGTTGAAAGTCTTTGCACTGAATCACCTTCC
GGATATGTAATGCGCTTACTTGGAGTCGCACAGAATCTACAATACCAGCC
CTTAACCGACGTGTCATTCAAACACGGATATTCCGAACAAGCAAGCAAGC
TACAACGTTAGCGTTTAGACTCCTGCCCATATCCCCCCCCCCCCCCCGGA
CCCATCGTACGCACGGACATATGATATGCGCTTGCACGCCCAAACCAGCC
TGGGGACGGGGCCGAGGAAGAAGCACCGCGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13735:2255..3385+

>mRNA_E-fasciculatus_F_contig13735.2762.1 ID=mRNA_E-fasciculatus_F_contig13735.2762.1|Name=mRNA_E-fasciculatus_F_contig13735.2762.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=528bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13735:2255..3385+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTCAACCGGCTTCTGATTGCGACGAAGTGCCTCGCCTGCCACGAAGT
AGTTCGAGTGGGTAGTTTTGTCTTGCCCCTCTTTGTGCTGCTGTCAATCC
CCATCATCTCTCTCTCCTTCCCTACACGTACGCAACAACCGCCGTATCTG
GGGGGCGTCAACCCATCTCGCCGTCGAAGTTTCTGCACTGCCCTCGCCGC
GGCTGCTATGGATAGGCAAGGAGATTGCAAGATGTTCAACCGGCTTCTGA
TTGCGACGAAGTGCCTCGCCTGCCACGAAGTAGTTCGAGTGGGTAGTTTT
GTCTTGCCCCTCTTTGTGCTGCTGTCAATCCCCATCATCTCTCTCTCCTT
CCCTACACGTACGCAACAACCGCCGTATCTGGGGGGCGTCAACCCATCTC
GCCGTCGAAGTTTCTGCACTGCCCTCGCCGCGGCTGCTATGGATAGGCAA
GGAGATTGCAAGCCTGGGGACGGGGCCGAGGAAGAAGCACCGCGACCTGG
GGACGGGGCCGAGGAAGAAGCACCGCGA
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