mRNA_E-fasciculatus_F_contig1373.2759.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1373.2759.1
Unique NamemRNA_E-fasciculatus_F_contig1373.2759.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1373.2759.1 vs. uniprot
Match: D7FKL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKL5_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 5.250e-13
Identity = 30/37 (81.08%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:    1 LPFLFSLKLFPRNAVGGARWPGDFEEQGTYSVEVRGV 111
            L F   ++LFPRNAVGGA WPGDFEEQGTYSVEVRGV
Sbjct:  101 LKFPVMMQLFPRNAVGGASWPGDFEEQGTYSVEVRGV 137
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BLAST of mRNA_E-fasciculatus_F_contig1373.2759.1 vs. uniprot
Match: A0A6H5KIW6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIW6_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 1.180e-11
Identity = 29/37 (78.38%), Postives = 31/37 (83.78%), Query Frame = 1 
Query:    1 LPFLFSLKLFPRNAVGGARWPGDFEEQGTYSVEVRGV 111
            L F   ++LFPRNAVGGA WPGDFEEQGTYSVEVR V
Sbjct:  160 LKFPVMMQLFPRNAVGGASWPGDFEEQGTYSVEVRSV 196
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1373.2759.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKL5_ECTSI5.250e-1381.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KIW6_9PHAE1.180e-1178.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1373contigE-fasciculatus_F_contig1373:18289..18399 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-09_000660.1
Exons1
Model size111
Cds size111
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927867.2792227-CDS-E-fasciculatus_F_contig1373:18288..183991622927867.2792227-CDS-E-fasciculatus_F_contig1373:18288..18399Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1373 18289..18399 -
1695995730.462279-CDS-E-fasciculatus_F_contig1373:18288..183991695995730.462279-CDS-E-fasciculatus_F_contig1373:18288..18399Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1373 18289..18399 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1373.2759.1prot_E-fasciculatus_F_contig1373.2759.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1373 18289..18399 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1373.2759.1

>prot_E-fasciculatus_F_contig1373.2759.1 ID=prot_E-fasciculatus_F_contig1373.2759.1|Name=mRNA_E-fasciculatus_F_contig1373.2759.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=37bp
LPFLFSLKLFPRNAVGGARWPGDFEEQGTYSVEVRGV
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mRNA from alignment at E-fasciculatus_F_contig1373:18289..18399-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1373.2759.1 ID=mRNA_E-fasciculatus_F_contig1373.2759.1|Name=mRNA_E-fasciculatus_F_contig1373.2759.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=111bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1373:18289..18399- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTGCCATTTTTGTTCTCTCTCAAGCTGTTTCCTAGAAACGCAGTTGGAGG
GGCGCGCTGGCCAGGCGATTTTGAGGAGCAGGGTACATACTCGGTTGAGG
TGCGCGGTGTT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1373:18289..18399-

>mRNA_E-fasciculatus_F_contig1373.2759.1 ID=mRNA_E-fasciculatus_F_contig1373.2759.1|Name=mRNA_E-fasciculatus_F_contig1373.2759.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=222bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1373:18289..18399- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTGCCATTTTTGTTCTCTCTCAAGCTGTTTCCTAGAAACGCAGTTGGAGG
GGCGCGCTGGCCAGGCGATTTTGAGGAGCAGGGTACATACTCGGTTGAGG
TGCGCGGTGTTTTGCCATTTTTGTTCTCTCTCAAGCTGTTTCCTAGAAAC
GCAGTTGGAGGGGCGCGCTGGCCAGGCGATTTTGAGGAGCAGGGTACATA
CTCGGTTGAGGTGCGCGGTGTT
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