mRNA_E-fasciculatus_F_contig13729.2756.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig13729.2756.1 vs. uniprot
Match: D8LBR5_ECTSI (Vesicle coat complex COPII, subunit SEC31 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR5_ECTSI) HSP 1 Score: 422 bits (1085), Expect = 1.410e-138 Identity = 237/266 (89.10%), Postives = 238/266 (89.47%), Query Frame = 1
Query: 19 SCGGADLWAKTQAQYFARESQQRPFLKVVNAIIKSELGVLVEASDLGQWQETLAILSTYAKQEEFPTLCEALASRLEAEAGDRKSANLCYMCAVKVPKTVEMWAEELKSANAAINGGTDTKALQDFVEKVSVFTQEPNDPPGEEVSAIFAEYAGILASEGETETAFKYIKGQGQNGAVLQDRLYHSAPHAAGTPAPPFPFERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDPRASTAAGGGGDALPPGWTQM 816
SCGGADLWAKTQAQYFARES QRPFLKVVNAIIKSELGVLVE SDLGQWQETLAILSTYAKQEEFPTLCEALASRLE EAGDRKSANLCYMCAVKVPKTVEMWAEELKSANAAINGGTDTKALQ+FVEKVSVFTQEPNDPPGEEVSAIFAEYAGILASEGETETAFKYIKGQGQNGAVLQDRLYHSAPHAAGTPAPPFPFER XXXXXXXXXXXXXXXXX SDPR STAAGGGGDALPPGWTQM
Sbjct: 425 SCGGADLWAKTQAQYFARESHQRPFLKVVNAIIKSELGVLVEGSDLGQWQETLAILSTYAKQEEFPTLCEALASRLETEAGDRKSANLCYMCAVKVPKTVEMWAEELKSANAAINGGTDTKALQEFVEKVSVFTQEPNDPPGEEVSAIFAEYAGILASEGETETAFKYIKGQGQNGAVLQDRLYHSAPHAAGTPAPPFPFERARVGVSPQSVVGGGSGAGVAXXXXXXXXXXXXXXXXXRAR-SDPRGSTAAGGGGDALPPGWTQM 689
BLAST of mRNA_E-fasciculatus_F_contig13729.2756.1 vs. uniprot
Match: A0A6H5KCD9_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCD9_9PHAE) HSP 1 Score: 413 bits (1061), Expect = 5.180e-132 Identity = 229/266 (86.09%), Postives = 232/266 (87.22%), Query Frame = 1
Query: 19 SCGGADLWAKTQAQYFARESQQRPFLKVVNAIIKSELGVLVEASDLGQWQETLAILSTYAKQEEFPTLCEALASRLEAEAGDRKSANLCYMCAVKVPKTVEMWAEELKSANAAINGGTDTKALQDFVEKVSVFTQEPNDPPGEEVSAIFAEYAGILASEGETETAFKYIKGQGQNGAVLQDRLYHSAPHAAGTPAPPFPFERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDPRASTAAGGGGDALPPGWTQM 816
SCGGADLWAKTQAQYFARES QRPFLKVVNAIIKSELGVLV+ASDLGQWQETLAILSTYAKQEEFPTLCEALASRLE EAGDRKSANLCYMCAVKVPKTVEMWA+ELKSANAAINGGTDTKALQ+FVEKVSVFTQEPNDPPGEEVSAIFAEYAGILASEGETETAFKYIKGQGQNGAVLQDRLYHSA HAAGTPAPPFPFER XXXXX XXXXXXXX SD R ST AGGGGDALPPGWTQM
Sbjct: 646 SCGGADLWAKTQAQYFARESHQRPFLKVVNAIIKSELGVLVDASDLGQWQETLAILSTYAKQEEFPTLCEALASRLETEAGDRKSANLCYMCAVKVPKTVEMWADELKSANAAINGGTDTKALQEFVEKVSVFTQEPNDPPGEEVSAIFAEYAGILASEGETETAFKYIKGQGQNGAVLQDRLYHSASHAAGTPAPPFPFERARVGVSPQSVVGGGSGAGMXXXXXNGAXXXXXXXXSAHIR-SDLRGSTVAGGGGDALPPGWTQM 910
BLAST of mRNA_E-fasciculatus_F_contig13729.2756.1 vs. uniprot
Match: A0A7S3UX94_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UX94_HETAK) HSP 1 Score: 199 bits (507), Expect = 2.640e-60 Identity = 108/179 (60.34%), Postives = 128/179 (71.51%), Query Frame = 1
Query: 19 SCGGADLWAKTQAQYFARESQQRPFLKVVNAIIKSELGVLVEASDLGQWQETLAILSTYAKQEEFPTLCEALASRLEAEAGDRKSANLCYMCAVKVPKTVEMWAEELKSANAAINGGTDTKALQDFVEKVSVFTQ-EPNDPPGEEVSAIFAEYAGILASEGETETAFKYIKGQGQNGAV 552
SCGGA+LWA TQA+YF +RPFL ++ IIKSELG LV A+ LG W+ETLAILSTYAK +EFP LCEALA+RLE EA D +A LCYMCAV VPKTV +W +L++AN A G D AL VEKV VF+Q EP+ G EV+A FA+YA LA++GE ETA KY G G GA
Sbjct: 51 SCGGAELWASTQARYFEAAGTRRPFLDLMACIIKSELGELVGANALGAWEETLAILSTYAKSDEFPVLCEALAARLEGEARDAAAATLCYMCAVNVPKTVGVWLRDLRAANLA-RGRLDPAALHAMVEKVLVFSQAEPDADLGPEVAAAFADYAQQLAAQGELETAAKYCGGGGGEGAA 228
BLAST of mRNA_E-fasciculatus_F_contig13729.2756.1 vs. uniprot
Match: A0A7S2Y0E2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0E2_9STRA) HSP 1 Score: 196 bits (498), Expect = 9.230e-57 Identity = 115/223 (51.57%), Postives = 138/223 (61.88%), Query Frame = 1
Query: 19 SCGGADLWAKTQAQYFARESQQRPFLKVVNAIIKSELGVLVEASDLGQWQETLAILSTYAKQEEFPTLCEALASRLEAEAGDRKSANLCYMCAVKVPKTVEMWAEELKSANAAINGGTDTKALQDFVEKVSVFTQ-EPNDPPGEEVSAIFAEYAGILASEGETETAFKYIKGQGQNGAV--------------LQDRLYHSAP-----HAA-GTPAPPFPFER 624
SCGGADLWAKTQAQYF E RPFL +V+AII+SEL LV S L WQETLAILSTYAK EEFP LCE LA RLE+E+ D SA LCYMCAV V KTV+ W +EL N G D+ AL VEKVS+F+Q +P+ G V+A FA YA LA++G+ TA KY++ + + L DRL+HS H G PPFPF++
Sbjct: 100 SCGGADLWAKTQAQYFETEGAYRPFLNIVSAIIRSELSKLVTTSKLTSWQETLAILSTYAKSEEFPGLCENLAERLESESFDVASATLCYMCAVNVHKTVQTWLDELHQVNLK-RGRVDSAALHSLVEKVSIFSQADPDADLGPGVAAAFAHYAQHLAAQGQLATAAKYVQATTHHQSSTTPTMDPGDLASRELNDRLFHSCDALKKQHTQQGMAPPPFPFDQ 321
BLAST of mRNA_E-fasciculatus_F_contig13729.2756.1 vs. uniprot
Match: A0A1E7FBK0_9STRA (WD40 repeat-like protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FBK0_9STRA) HSP 1 Score: 193 bits (490), Expect = 2.590e-52 Identity = 105/207 (50.72%), Postives = 135/207 (65.22%), Query Frame = 1
Query: 19 SCGGADLWAKTQAQYFARESQQRPFLKVVNAIIKSELGVLVEASDLGQWQETLAILSTYAKQEEFPTLCEALASRLEAEAGDRKSANLCYMCAVKVPKTVEMWAEELKSANAAINGGTDTKALQDFVEKVSVFTQEPNDPPG--EEVSAIFAEYAGILASEGETETAFKYIKGQGQNGAVLQDRLYHS-APH----AAGTPAPPFPF 618
SCGGADLWAKTQ +YF +S +RPFL VV AII++EL L+++SDL WQETLAILSTY K +EFP LC AL RLE E+GD SA+LC+MCA+ + K ++ W +L ++NA+ +G D A +FV KVS+F Q E + +F++YA LA +G TA KY KG N +L+DRLY S A H A G P FPF
Sbjct: 560 SCGGADLWAKTQERYFESQSSKRPFLSVVGAIIRNELPSLIQSSDLATWQETLAILSTYGKSDEFPQLCVALGDRLE-ESGDHSSASLCFMCALSLNKAIKYWRTQLANSNASKDGDMDIPAAHEFVVKVSIFLQAAGSTENLAAEDAELFSKYAEKLAEQGLLVTAAKYCKGDSANSKILRDRLYRSRASHKCLAAMGNTPPEFPF 765
BLAST of mRNA_E-fasciculatus_F_contig13729.2756.1 vs. uniprot
Match: A0A7S2GC77_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GC77_9STRA) HSP 1 Score: 193 bits (490), Expect = 2.880e-52 Identity = 102/204 (50.00%), Postives = 141/204 (69.12%), Query Frame = 1
Query: 19 SCGGADLWAKTQAQYFARESQQRPFLKVVNAIIKSELGVLVEASDLGQWQETLAILSTYAKQEEFPTLCEALASRLEAEAGDRKSANLCYMCAVKVPKTVEMWAEELKSANAAINGGTDTKALQDFVEKVSVFTQE-PNDPPG--EEVSAIFAEYAGILASEGETETAFKYIKGQGQNGAVLQDRLYHSA-PHAAGTPAPPFPF 618
SC GA+LW +T+ +YF ES+ RP+LK+V+AII +L LV +SDLG W+ETLAILSTYAK ++FP LCE LASRLE E D++SA+LCYMCA +PKTVE W + + ++ GG ++ AL+ VEKV+VFTQE P G E + ++ EY +LA++G T TA KYI+G Q+ L+ RL+++A + + PP PF
Sbjct: 621 SCDGAELWEQTRMRYFELESKSRPYLKIVSAIITCKLDELVHSSDLGVWRETLAILSTYAKSDDFPRLCEQLASRLEVEMSDKESASLCYMCAANIPKTVEYWISQFEKSSL---GGRNSMALEALVEKVTVFTQEDPGMLQGALEPMISLLTEYGALLANQGATMTALKYIRGNDQSSNELRHRLFYAACMESTNSQHPPTPF 821
BLAST of mRNA_E-fasciculatus_F_contig13729.2756.1 vs. uniprot
Match: K3WPT1_GLOUD (Sec16_C domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WPT1_GLOUD) HSP 1 Score: 192 bits (488), Expect = 5.400e-52 Identity = 110/204 (53.92%), Postives = 142/204 (69.61%), Query Frame = 1
Query: 19 SCGGADLWAKTQAQYFARESQQRPFLKVVNAIIKSELGVLVEASDLGQWQETLAILSTYAKQEEFPTLCEALASRLEAEAGDRKSANLCYMCAVKVPKTVEMWAEELKSANAAINGGTDTKALQDFVEKVSVFTQ--EPNDPP-GEEVSAIFAEYAGILASEGETETAFKYIKGQGQNGAVLQDRLYHSAPHAAGTPAPPFPFE 621
SCGG +LW KTQ +FA Q RP ++VV+AIIKSEL LVE SDL +W+ETLAILSTYAK EEFP+LC+ LA+RLEA AGD SA LC+MCAV + KTV W +E + + A T ALQ VEKVS+F+Q + ND GEEV+ FAEYA ++A++G + A KY + + A+L+DR++H+AP G PPFPF+
Sbjct: 612 SCGGTELWDKTQRAFFAH--QTRPVMRVVSAIIKSELHSLVEQSDLKEWRETLAILSTYAKSEEFPSLCDKLATRLEA-AGDLHSATLCFMCAVNIEKTVNAWVKESEVESRAHGH---TFALQRLVEKVSIFSQAVDQNDQSMGEEVAMRFAEYASLMAAQGRLDIAAKYARFPDLSCAILKDRIFHAAP-IPGYQPPPFPFD 808
BLAST of mRNA_E-fasciculatus_F_contig13729.2756.1 vs. uniprot
Match: K0R8A7_THAOC (WW domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R8A7_THAOC) HSP 1 Score: 182 bits (463), Expect = 6.720e-52 Identity = 101/206 (49.03%), Postives = 134/206 (65.05%), Query Frame = 1
Query: 19 SCGGADLWAKTQAQYFARESQQRPFLKVVNAIIKSELGVLVEASDLGQWQETLAILSTYAKQEEFPTLCEALASRLEAEAGDRKSANLCYMCAVKVPKTVEMWAEELKSANAAINGGTDTKALQDFVEKVSVFTQEPNDPPGEE-VSAIFAEYAGILASEGETETAFKYIKGQGQNGAVLQDRLYHS-----APHAAGTPAPPFPF 618
SCGGADLWAK QA+YF RES +RPFL +V+A+I +L LV ASD +W+ETLA++STY K +EFP LC AL RLE AGD +A+LCYMCA+ + + V W E L+ N D +LQDFVEKV+VF++ + E+ V+ +FAEYAG LAS+G A KY++G ++ L+DR+Y S P P P FP+
Sbjct: 39 SCGGADLWAKAQAEYFRRESGRRPFLGLVSAVIHDQLTELVSASDPAEWRETLAVVSTYGKSDEFPGLCAALGDRLEG-AGDPANASLCYMCALSLGQAVGYWRETLEGRKGGDNATDDLLSLQDFVEKVTVFSKTVDSYELEDDVADLFAEYAGALASQGMLVAAAKYLRGTTRDCKELRDRIYRSRVGRYCPDLVSNP-PDFPY 242
BLAST of mRNA_E-fasciculatus_F_contig13729.2756.1 vs. uniprot
Match: A0A5D6XUG0_9STRA (Sec16_C domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XUG0_9STRA) HSP 1 Score: 191 bits (485), Expect = 1.360e-51 Identity = 108/204 (52.94%), Postives = 139/204 (68.14%), Query Frame = 1
Query: 19 SCGGADLWAKTQAQYFARESQQRPFLKVVNAIIKSELGVLVEASDLGQWQETLAILSTYAKQEEFPTLCEALASRLEAEAGDRKSANLCYMCAVKVPKTVEMWAEELKSANAAINGGTDTKALQDFVEKVSVFTQ---EPNDPPGEEVSAIFAEYAGILASEGETETAFKYIKGQGQNGAVLQDRLYHSAPHAAGTPAPPFPFE 621
SCGG +LW KTQ +FA+ Q RP ++VV+AIIKSEL LVE SDL +W ETLAILSTYAK EEFP+LC+ LA+RLE EAGD SA LC+MCAV V KTV W +E + + T ALQ VEKVS+F+Q + + G+ V+ FAEYA ++A+EG + A KY + + A+L+DR++H+AP G PPFPFE
Sbjct: 604 SCGGPELWEKTQRAFFAQ--QTRPVMRVVSAIIKSELFSLVEQSDLKEWSETLAILSTYAKSEEFPSLCDKLATRLE-EAGDLHSATLCFMCAVNVEKTVNAWVKESEFESRVFGH---TLALQRLVEKVSIFSQAIEQQDQSMGDAVAMRFAEYASLMAAEGRLDIAAKYARFPDLSCAILKDRIFHAAP-IPGYQPPPFPFE 800
BLAST of mRNA_E-fasciculatus_F_contig13729.2756.1 vs. uniprot
Match: A0A448Z759_9STRA (WW domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z759_9STRA) HSP 1 Score: 189 bits (481), Expect = 3.670e-51 Identity = 106/207 (51.21%), Postives = 131/207 (63.29%), Query Frame = 1
Query: 19 SCGGADLWAKTQAQYFARESQQRPFLKVVNAIIKSELGVLVEASDLGQWQETLAILSTYAKQEEFPTLCEALASRLEAEAGDRKSANLCYMCAVKVPKTVEMWAEELKSANAAINGGTDTKALQDFVEKVSVFTQEPNDPPG--EEVSAIFAEYAGILASEGETETAFKYIKGQGQNGAVLQDRLYHSAPH-----AAGTPAPPFPF 618
SCGG DLWAKTQ +YFA +SQ+RPFL VV AII+ +L LV+ SDLG W+ETLAILSTY+K EEFP LC AL +LEA AGD +A+LC+MCA+ + K V+ W +L NA+ + KA+ DFV KV+VF Q E IF+ YA LA +G TA KY KG + +L+DRLY S A G AP FPF
Sbjct: 479 SCGGGDLWAKTQERYFASQSQKRPFLSVVGAIIRHDLASLVQDSDLGNWKETLAILSTYSKSEEFPPLCVALGEKLEA-AGDHSNASLCFMCALSLNKAVKYWRMQLTKQNASEGSKLNLKAIHDFVVKVAVFLQAAGSSESLDAEFEEIFSIYAEKLAEQGLLVTAAKYCKGNSTSSKILRDRLYRSKASQKCLAAMGGIAPEFPF 684 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13729.2756.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig13729.2756.1 >prot_E-fasciculatus_F_contig13729.2756.1 ID=prot_E-fasciculatus_F_contig13729.2756.1|Name=mRNA_E-fasciculatus_F_contig13729.2756.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=272bp MTQNGNSCGGADLWAKTQAQYFARESQQRPFLKVVNAIIKSELGVLVEASback to top mRNA from alignment at E-fasciculatus_F_contig13729:26..3073- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig13729.2756.1 ID=mRNA_E-fasciculatus_F_contig13729.2756.1|Name=mRNA_E-fasciculatus_F_contig13729.2756.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3048bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13729:26..3073- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13729:26..3073- >mRNA_E-fasciculatus_F_contig13729.2756.1 ID=mRNA_E-fasciculatus_F_contig13729.2756.1|Name=mRNA_E-fasciculatus_F_contig13729.2756.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1632bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13729:26..3073- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |