mRNA_E-fasciculatus_F_contig13729.2756.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13729.2756.1
Unique NamemRNA_E-fasciculatus_F_contig13729.2756.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig13729.2756.1 vs. uniprot
Match: D8LBR5_ECTSI (Vesicle coat complex COPII, subunit SEC31 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR5_ECTSI)

HSP 1 Score: 422 bits (1085), Expect = 1.410e-138
Identity = 237/266 (89.10%), Postives = 238/266 (89.47%), Query Frame = 1
Query:   19 SCGGADLWAKTQAQYFARESQQRPFLKVVNAIIKSELGVLVEASDLGQWQETLAILSTYAKQEEFPTLCEALASRLEAEAGDRKSANLCYMCAVKVPKTVEMWAEELKSANAAINGGTDTKALQDFVEKVSVFTQEPNDPPGEEVSAIFAEYAGILASEGETETAFKYIKGQGQNGAVLQDRLYHSAPHAAGTPAPPFPFERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDPRASTAAGGGGDALPPGWTQM 816
            SCGGADLWAKTQAQYFARES QRPFLKVVNAIIKSELGVLVE SDLGQWQETLAILSTYAKQEEFPTLCEALASRLE EAGDRKSANLCYMCAVKVPKTVEMWAEELKSANAAINGGTDTKALQ+FVEKVSVFTQEPNDPPGEEVSAIFAEYAGILASEGETETAFKYIKGQGQNGAVLQDRLYHSAPHAAGTPAPPFPFER                    XXXXXXXXXXXXXXXXX    SDPR STAAGGGGDALPPGWTQM
Sbjct:  425 SCGGADLWAKTQAQYFARESHQRPFLKVVNAIIKSELGVLVEGSDLGQWQETLAILSTYAKQEEFPTLCEALASRLETEAGDRKSANLCYMCAVKVPKTVEMWAEELKSANAAINGGTDTKALQEFVEKVSVFTQEPNDPPGEEVSAIFAEYAGILASEGETETAFKYIKGQGQNGAVLQDRLYHSAPHAAGTPAPPFPFERARVGVSPQSVVGGGSGAGVAXXXXXXXXXXXXXXXXXRAR-SDPRGSTAAGGGGDALPPGWTQM 689          
BLAST of mRNA_E-fasciculatus_F_contig13729.2756.1 vs. uniprot
Match: A0A6H5KCD9_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCD9_9PHAE)

HSP 1 Score: 413 bits (1061), Expect = 5.180e-132
Identity = 229/266 (86.09%), Postives = 232/266 (87.22%), Query Frame = 1
Query:   19 SCGGADLWAKTQAQYFARESQQRPFLKVVNAIIKSELGVLVEASDLGQWQETLAILSTYAKQEEFPTLCEALASRLEAEAGDRKSANLCYMCAVKVPKTVEMWAEELKSANAAINGGTDTKALQDFVEKVSVFTQEPNDPPGEEVSAIFAEYAGILASEGETETAFKYIKGQGQNGAVLQDRLYHSAPHAAGTPAPPFPFERXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDPRASTAAGGGGDALPPGWTQM 816
            SCGGADLWAKTQAQYFARES QRPFLKVVNAIIKSELGVLV+ASDLGQWQETLAILSTYAKQEEFPTLCEALASRLE EAGDRKSANLCYMCAVKVPKTVEMWA+ELKSANAAINGGTDTKALQ+FVEKVSVFTQEPNDPPGEEVSAIFAEYAGILASEGETETAFKYIKGQGQNGAVLQDRLYHSA HAAGTPAPPFPFER                   XXXXX   XXXXXXXX      SD R ST AGGGGDALPPGWTQM
Sbjct:  646 SCGGADLWAKTQAQYFARESHQRPFLKVVNAIIKSELGVLVDASDLGQWQETLAILSTYAKQEEFPTLCEALASRLETEAGDRKSANLCYMCAVKVPKTVEMWADELKSANAAINGGTDTKALQEFVEKVSVFTQEPNDPPGEEVSAIFAEYAGILASEGETETAFKYIKGQGQNGAVLQDRLYHSASHAAGTPAPPFPFERARVGVSPQSVVGGGSGAGMXXXXXNGAXXXXXXXXSAHIR-SDLRGSTVAGGGGDALPPGWTQM 910          
BLAST of mRNA_E-fasciculatus_F_contig13729.2756.1 vs. uniprot
Match: A0A7S3UX94_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UX94_HETAK)

HSP 1 Score: 199 bits (507), Expect = 2.640e-60
Identity = 108/179 (60.34%), Postives = 128/179 (71.51%), Query Frame = 1
Query:   19 SCGGADLWAKTQAQYFARESQQRPFLKVVNAIIKSELGVLVEASDLGQWQETLAILSTYAKQEEFPTLCEALASRLEAEAGDRKSANLCYMCAVKVPKTVEMWAEELKSANAAINGGTDTKALQDFVEKVSVFTQ-EPNDPPGEEVSAIFAEYAGILASEGETETAFKYIKGQGQNGAV 552
            SCGGA+LWA TQA+YF     +RPFL ++  IIKSELG LV A+ LG W+ETLAILSTYAK +EFP LCEALA+RLE EA D  +A LCYMCAV VPKTV +W  +L++AN A  G  D  AL   VEKV VF+Q EP+   G EV+A FA+YA  LA++GE ETA KY  G G  GA 
Sbjct:   51 SCGGAELWASTQARYFEAAGTRRPFLDLMACIIKSELGELVGANALGAWEETLAILSTYAKSDEFPVLCEALAARLEGEARDAAAATLCYMCAVNVPKTVGVWLRDLRAANLA-RGRLDPAALHAMVEKVLVFSQAEPDADLGPEVAAAFADYAQQLAAQGELETAAKYCGGGGGEGAA 228          
BLAST of mRNA_E-fasciculatus_F_contig13729.2756.1 vs. uniprot
Match: A0A7S2Y0E2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y0E2_9STRA)

HSP 1 Score: 196 bits (498), Expect = 9.230e-57
Identity = 115/223 (51.57%), Postives = 138/223 (61.88%), Query Frame = 1
Query:   19 SCGGADLWAKTQAQYFARESQQRPFLKVVNAIIKSELGVLVEASDLGQWQETLAILSTYAKQEEFPTLCEALASRLEAEAGDRKSANLCYMCAVKVPKTVEMWAEELKSANAAINGGTDTKALQDFVEKVSVFTQ-EPNDPPGEEVSAIFAEYAGILASEGETETAFKYIKGQGQNGAV--------------LQDRLYHSAP-----HAA-GTPAPPFPFER 624
            SCGGADLWAKTQAQYF  E   RPFL +V+AII+SEL  LV  S L  WQETLAILSTYAK EEFP LCE LA RLE+E+ D  SA LCYMCAV V KTV+ W +EL   N    G  D+ AL   VEKVS+F+Q +P+   G  V+A FA YA  LA++G+  TA KY++    + +               L DRL+HS       H   G   PPFPF++
Sbjct:  100 SCGGADLWAKTQAQYFETEGAYRPFLNIVSAIIRSELSKLVTTSKLTSWQETLAILSTYAKSEEFPGLCENLAERLESESFDVASATLCYMCAVNVHKTVQTWLDELHQVNLK-RGRVDSAALHSLVEKVSIFSQADPDADLGPGVAAAFAHYAQHLAAQGQLATAAKYVQATTHHQSSTTPTMDPGDLASRELNDRLFHSCDALKKQHTQQGMAPPPFPFDQ 321          
BLAST of mRNA_E-fasciculatus_F_contig13729.2756.1 vs. uniprot
Match: A0A1E7FBK0_9STRA (WD40 repeat-like protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FBK0_9STRA)

HSP 1 Score: 193 bits (490), Expect = 2.590e-52
Identity = 105/207 (50.72%), Postives = 135/207 (65.22%), Query Frame = 1
Query:   19 SCGGADLWAKTQAQYFARESQQRPFLKVVNAIIKSELGVLVEASDLGQWQETLAILSTYAKQEEFPTLCEALASRLEAEAGDRKSANLCYMCAVKVPKTVEMWAEELKSANAAINGGTDTKALQDFVEKVSVFTQEPNDPPG--EEVSAIFAEYAGILASEGETETAFKYIKGQGQNGAVLQDRLYHS-APH----AAGTPAPPFPF 618
            SCGGADLWAKTQ +YF  +S +RPFL VV AII++EL  L+++SDL  WQETLAILSTY K +EFP LC AL  RLE E+GD  SA+LC+MCA+ + K ++ W  +L ++NA+ +G  D  A  +FV KVS+F Q          E + +F++YA  LA +G   TA KY KG   N  +L+DRLY S A H    A G   P FPF
Sbjct:  560 SCGGADLWAKTQERYFESQSSKRPFLSVVGAIIRNELPSLIQSSDLATWQETLAILSTYGKSDEFPQLCVALGDRLE-ESGDHSSASLCFMCALSLNKAIKYWRTQLANSNASKDGDMDIPAAHEFVVKVSIFLQAAGSTENLAAEDAELFSKYAEKLAEQGLLVTAAKYCKGDSANSKILRDRLYRSRASHKCLAAMGNTPPEFPF 765          
BLAST of mRNA_E-fasciculatus_F_contig13729.2756.1 vs. uniprot
Match: A0A7S2GC77_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GC77_9STRA)

HSP 1 Score: 193 bits (490), Expect = 2.880e-52
Identity = 102/204 (50.00%), Postives = 141/204 (69.12%), Query Frame = 1
Query:   19 SCGGADLWAKTQAQYFARESQQRPFLKVVNAIIKSELGVLVEASDLGQWQETLAILSTYAKQEEFPTLCEALASRLEAEAGDRKSANLCYMCAVKVPKTVEMWAEELKSANAAINGGTDTKALQDFVEKVSVFTQE-PNDPPG--EEVSAIFAEYAGILASEGETETAFKYIKGQGQNGAVLQDRLYHSA-PHAAGTPAPPFPF 618
            SC GA+LW +T+ +YF  ES+ RP+LK+V+AII  +L  LV +SDLG W+ETLAILSTYAK ++FP LCE LASRLE E  D++SA+LCYMCA  +PKTVE W  + + ++    GG ++ AL+  VEKV+VFTQE P    G  E + ++  EY  +LA++G T TA KYI+G  Q+   L+ RL+++A   +  +  PP PF
Sbjct:  621 SCDGAELWEQTRMRYFELESKSRPYLKIVSAIITCKLDELVHSSDLGVWRETLAILSTYAKSDDFPRLCEQLASRLEVEMSDKESASLCYMCAANIPKTVEYWISQFEKSSL---GGRNSMALEALVEKVTVFTQEDPGMLQGALEPMISLLTEYGALLANQGATMTALKYIRGNDQSSNELRHRLFYAACMESTNSQHPPTPF 821          
BLAST of mRNA_E-fasciculatus_F_contig13729.2756.1 vs. uniprot
Match: K3WPT1_GLOUD (Sec16_C domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WPT1_GLOUD)

HSP 1 Score: 192 bits (488), Expect = 5.400e-52
Identity = 110/204 (53.92%), Postives = 142/204 (69.61%), Query Frame = 1
Query:   19 SCGGADLWAKTQAQYFARESQQRPFLKVVNAIIKSELGVLVEASDLGQWQETLAILSTYAKQEEFPTLCEALASRLEAEAGDRKSANLCYMCAVKVPKTVEMWAEELKSANAAINGGTDTKALQDFVEKVSVFTQ--EPNDPP-GEEVSAIFAEYAGILASEGETETAFKYIKGQGQNGAVLQDRLYHSAPHAAGTPAPPFPFE 621
            SCGG +LW KTQ  +FA   Q RP ++VV+AIIKSEL  LVE SDL +W+ETLAILSTYAK EEFP+LC+ LA+RLEA AGD  SA LC+MCAV + KTV  W +E +  + A      T ALQ  VEKVS+F+Q  + ND   GEEV+  FAEYA ++A++G  + A KY +    + A+L+DR++H+AP   G   PPFPF+
Sbjct:  612 SCGGTELWDKTQRAFFAH--QTRPVMRVVSAIIKSELHSLVEQSDLKEWRETLAILSTYAKSEEFPSLCDKLATRLEA-AGDLHSATLCFMCAVNIEKTVNAWVKESEVESRAHGH---TFALQRLVEKVSIFSQAVDQNDQSMGEEVAMRFAEYASLMAAQGRLDIAAKYARFPDLSCAILKDRIFHAAP-IPGYQPPPFPFD 808          
BLAST of mRNA_E-fasciculatus_F_contig13729.2756.1 vs. uniprot
Match: K0R8A7_THAOC (WW domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R8A7_THAOC)

HSP 1 Score: 182 bits (463), Expect = 6.720e-52
Identity = 101/206 (49.03%), Postives = 134/206 (65.05%), Query Frame = 1
Query:   19 SCGGADLWAKTQAQYFARESQQRPFLKVVNAIIKSELGVLVEASDLGQWQETLAILSTYAKQEEFPTLCEALASRLEAEAGDRKSANLCYMCAVKVPKTVEMWAEELKSANAAINGGTDTKALQDFVEKVSVFTQEPNDPPGEE-VSAIFAEYAGILASEGETETAFKYIKGQGQNGAVLQDRLYHS-----APHAAGTPAPPFPF 618
            SCGGADLWAK QA+YF RES +RPFL +V+A+I  +L  LV ASD  +W+ETLA++STY K +EFP LC AL  RLE  AGD  +A+LCYMCA+ + + V  W E L+      N   D  +LQDFVEKV+VF++  +    E+ V+ +FAEYAG LAS+G    A KY++G  ++   L+DR+Y S      P     P P FP+
Sbjct:   39 SCGGADLWAKAQAEYFRRESGRRPFLGLVSAVIHDQLTELVSASDPAEWRETLAVVSTYGKSDEFPGLCAALGDRLEG-AGDPANASLCYMCALSLGQAVGYWRETLEGRKGGDNATDDLLSLQDFVEKVTVFSKTVDSYELEDDVADLFAEYAGALASQGMLVAAAKYLRGTTRDCKELRDRIYRSRVGRYCPDLVSNP-PDFPY 242          
BLAST of mRNA_E-fasciculatus_F_contig13729.2756.1 vs. uniprot
Match: A0A5D6XUG0_9STRA (Sec16_C domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XUG0_9STRA)

HSP 1 Score: 191 bits (485), Expect = 1.360e-51
Identity = 108/204 (52.94%), Postives = 139/204 (68.14%), Query Frame = 1
Query:   19 SCGGADLWAKTQAQYFARESQQRPFLKVVNAIIKSELGVLVEASDLGQWQETLAILSTYAKQEEFPTLCEALASRLEAEAGDRKSANLCYMCAVKVPKTVEMWAEELKSANAAINGGTDTKALQDFVEKVSVFTQ---EPNDPPGEEVSAIFAEYAGILASEGETETAFKYIKGQGQNGAVLQDRLYHSAPHAAGTPAPPFPFE 621
            SCGG +LW KTQ  +FA+  Q RP ++VV+AIIKSEL  LVE SDL +W ETLAILSTYAK EEFP+LC+ LA+RLE EAGD  SA LC+MCAV V KTV  W +E +  +        T ALQ  VEKVS+F+Q   + +   G+ V+  FAEYA ++A+EG  + A KY +    + A+L+DR++H+AP   G   PPFPFE
Sbjct:  604 SCGGPELWEKTQRAFFAQ--QTRPVMRVVSAIIKSELFSLVEQSDLKEWSETLAILSTYAKSEEFPSLCDKLATRLE-EAGDLHSATLCFMCAVNVEKTVNAWVKESEFESRVFGH---TLALQRLVEKVSIFSQAIEQQDQSMGDAVAMRFAEYASLMAAEGRLDIAAKYARFPDLSCAILKDRIFHAAP-IPGYQPPPFPFE 800          
BLAST of mRNA_E-fasciculatus_F_contig13729.2756.1 vs. uniprot
Match: A0A448Z759_9STRA (WW domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z759_9STRA)

HSP 1 Score: 189 bits (481), Expect = 3.670e-51
Identity = 106/207 (51.21%), Postives = 131/207 (63.29%), Query Frame = 1
Query:   19 SCGGADLWAKTQAQYFARESQQRPFLKVVNAIIKSELGVLVEASDLGQWQETLAILSTYAKQEEFPTLCEALASRLEAEAGDRKSANLCYMCAVKVPKTVEMWAEELKSANAAINGGTDTKALQDFVEKVSVFTQEPNDPPG--EEVSAIFAEYAGILASEGETETAFKYIKGQGQNGAVLQDRLYHSAPH-----AAGTPAPPFPF 618
            SCGG DLWAKTQ +YFA +SQ+RPFL VV AII+ +L  LV+ SDLG W+ETLAILSTY+K EEFP LC AL  +LEA AGD  +A+LC+MCA+ + K V+ W  +L   NA+     + KA+ DFV KV+VF Q          E   IF+ YA  LA +G   TA KY KG   +  +L+DRLY S        A G  AP FPF
Sbjct:  479 SCGGGDLWAKTQERYFASQSQKRPFLSVVGAIIRHDLASLVQDSDLGNWKETLAILSTYSKSEEFPPLCVALGEKLEA-AGDHSNASLCFMCALSLNKAVKYWRMQLTKQNASEGSKLNLKAIHDFVVKVAVFLQAAGSSESLDAEFEEIFSIYAEKLAEQGLLVTAAKYCKGNSTSSKILRDRLYRSKASQKCLAAMGGIAPEFPF 684          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13729.2756.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBR5_ECTSI1.410e-13889.10Vesicle coat complex COPII, subunit SEC31 n=1 Tax=... [more]
A0A6H5KCD9_9PHAE5.180e-13286.09WW domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A7S3UX94_HETAK2.640e-6060.34Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2Y0E2_9STRA9.230e-5751.57Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A1E7FBK0_9STRA2.590e-5250.72WD40 repeat-like protein n=1 Tax=Fragilariopsis cy... [more]
A0A7S2GC77_9STRA2.880e-5250.00Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
K3WPT1_GLOUD5.400e-5253.92Sec16_C domain-containing protein n=1 Tax=Globispo... [more]
K0R8A7_THAOC6.720e-5249.03WW domain-containing protein (Fragment) n=1 Tax=Th... [more]
A0A5D6XUG0_9STRA1.360e-5152.94Sec16_C domain-containing protein n=1 Tax=Pythium ... [more]
A0A448Z759_9STRA3.670e-5151.21WW domain-containing protein n=1 Tax=Pseudo-nitzsc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13729contigE-fasciculatus_F_contig13729:26..3073 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score424.9
Seed ortholog evalue2.9e-116
Seed eggNOG ortholog2880.D8LBR5
KEGG koko:K14005
KEGG Pathwayko04141,map04141
KEGG ModuleM00404
GOsGO:0006810,GO:0006886,GO:0006888,GO:0008104,GO:0008150,GO:0015031,GO:0015833,GO:0016192,GO:0033036,GO:0034613,GO:0042886,GO:0045184,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705
EggNOG free text desc.vesicle-mediated transport
EggNOG OGsKOG0307@1,KOG0307@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04131
Hectar predicted targeting categoryother localisation
Exons6
Model size816
Cds size816
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13729.2756.1prot_E-fasciculatus_F_contig13729.2756.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13729 26..3073 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927866.760575-CDS-E-fasciculatus_F_contig13729:25..2781622927866.760575-CDS-E-fasciculatus_F_contig13729:25..278Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13729 26..278 -
1695995730.183157-CDS-E-fasciculatus_F_contig13729:25..2781695995730.183157-CDS-E-fasciculatus_F_contig13729:25..278Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13729 26..278 -
1622927866.780608-CDS-E-fasciculatus_F_contig13729:605..7181622927866.780608-CDS-E-fasciculatus_F_contig13729:605..718Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13729 606..718 -
1695995730.1993546-CDS-E-fasciculatus_F_contig13729:605..7181695995730.1993546-CDS-E-fasciculatus_F_contig13729:605..718Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13729 606..718 -
1622927866.801217-CDS-E-fasciculatus_F_contig13729:1183..12521622927866.801217-CDS-E-fasciculatus_F_contig13729:1183..1252Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13729 1184..1252 -
1695995730.2091064-CDS-E-fasciculatus_F_contig13729:1183..12521695995730.2091064-CDS-E-fasciculatus_F_contig13729:1183..1252Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13729 1184..1252 -
1622927866.8173084-CDS-E-fasciculatus_F_contig13729:1910..20011622927866.8173084-CDS-E-fasciculatus_F_contig13729:1910..2001Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13729 1911..2001 -
1695995730.2196398-CDS-E-fasciculatus_F_contig13729:1910..20011695995730.2196398-CDS-E-fasciculatus_F_contig13729:1910..2001Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13729 1911..2001 -
1622927866.8417025-CDS-E-fasciculatus_F_contig13729:2549..26351622927866.8417025-CDS-E-fasciculatus_F_contig13729:2549..2635Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13729 2550..2635 -
1695995730.236183-CDS-E-fasciculatus_F_contig13729:2549..26351695995730.236183-CDS-E-fasciculatus_F_contig13729:2549..2635Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13729 2550..2635 -
1622927866.8613918-CDS-E-fasciculatus_F_contig13729:2869..30731622927866.8613918-CDS-E-fasciculatus_F_contig13729:2869..3073Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13729 2870..3073 -
1695995730.2454736-CDS-E-fasciculatus_F_contig13729:2869..30731695995730.2454736-CDS-E-fasciculatus_F_contig13729:2869..3073Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13729 2870..3073 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13729.2756.1

>prot_E-fasciculatus_F_contig13729.2756.1 ID=prot_E-fasciculatus_F_contig13729.2756.1|Name=mRNA_E-fasciculatus_F_contig13729.2756.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=272bp
MTQNGNSCGGADLWAKTQAQYFARESQQRPFLKVVNAIIKSELGVLVEAS
DLGQWQETLAILSTYAKQEEFPTLCEALASRLEAEAGDRKSANLCYMCAV
KVPKTVEMWAEELKSANAAINGGTDTKALQDFVEKVSVFTQEPNDPPGEE
VSAIFAEYAGILASEGETETAFKYIKGQGQNGAVLQDRLYHSAPHAAGTP
APPFPFERARVGVSPQSVAGGGSGAGVGGGGGANGATAGGGGAGSARARS
DPRASTAAGGGGDALPPGWTQM
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mRNA from alignment at E-fasciculatus_F_contig13729:26..3073-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13729.2756.1 ID=mRNA_E-fasciculatus_F_contig13729.2756.1|Name=mRNA_E-fasciculatus_F_contig13729.2756.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3048bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13729:26..3073- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGACACAAAACGGAAACAGCTGCGGGGGCGCGGATCTGTGGGCCAAGAC CCAAGCCCAGTACTTCGCGCGGGAGTCGCAGCAGCGCCCCTTCCTCAAGG TGGTGAACGCCATCATCAAGTCCGAGCTGGGGGTCCTCGTGGAGGCGAGC GATCTCGGGCAGTGGCAGGAGACCCTGGCCATCCTGTCCACGTACGCCAA GCAGGTGGGTGACGACACATGATGAAAAATAAGGTAAGGAAGGTAAGGTA ACGTTCAACGCGATTCGTGGGAAATGTTACAAGAAGGTGCTGCGCCGCGC ATGGCGGCAACGCATCATAAAACGTCCGCCCCGCCGAAATCGGTAAACAT GTCCATCCAAATCGATACTGCTGTATGTTGACACTTTTCAATATCGCTGC GTGTCACGGCCGGCGAAACCGCTGAAATGGATCATCAGGAGGAGTTCCCT ACTCTATGCGAGGCCTTGGCGTCGCGACTGGAGGCGGAGGCCGGGGACCG CAAGTCGGCTAACCTCTGCTACATGTGACCATTGACCTCGCATGAGGGGG AAGATAATCTGTTAGGCGAGAGGGGGAGGGGCGAAGCGTATTGTTGCAGC AAACTCCAGCATTGCAGTTTGGCATGCCGGCGTGCTATTGCTGTTTTACA GCTAAAGAAGCCGTCCGATGTATCAAGTACCTCCTGTTTGCTGTTTGCTG TTTGCTGTTTGGTACTTGCCCGTGCCGGTGGCACAAATTTTAATTGTTAC ATGCATATCGTGAGTGAAGAGACGGGCGTTTGTTGTGCTGCCAGAGTACG ATTGATCCATATATACAACATCCCGGAAGGATACAAGTTGAAAAACTAGA AACCAAGTGGTGGCAACAACGCAACCCTGCTCGTGCCCCCCATTATCTCC AACATGAAGGTTGGAAGGTTGTAAGTAGACGAGGGAATATATGTTCCAAA AGGCAACGTACGACAGCAGTGTCGCCGTCCATTGGACCCCTGGGGCTCCA CCAATCGACCCCAAACCTTTTTATGTATCACGCCGCGACGGCTCTGCGAC TCGTCTCTACTTCATCTACCAGGTGCGCGGTGAAGGTGCCCAAGACGGTG GAGATGTGGGCGGAGGAGCTCAAATCGGCCAACGCAGCCATCAACGGGGG CACCGACACGAAGGTGTGTGTGTGGGGGGGGGGGGGGGGGGGGGGGGGGG GGGGGCACTCGGTTGAGAAAGACTAAACATGTTCTACTGGTACATGGTTC TCGAGCCGTGCTGTACTGTAGCGCGATGCACTCGTCGTGTGGGGTGTGGT TTATTTGGGTGATGTTGGTAAGGACAATAGTACGCACAGGGATGGATCTG TCGCTGAATGTATTCTAGCGCTGCGTAAGACTGCTGTGTCGTCATGATGC CGTGATACCCACACATGAATGGAGTGAGACAGACCTGTGCCTCATCATGC CGCGCGTGTGGTGAGCTGGGCAGTGGTTGGGTGCTCAAGCAAGCGCCTTT TCTGTGTGTACTGGTGCGGAAGGGAAGGAAGAATAAATGAGAAACGTTGG TCATATCTGTCTGCGGACGCGCCGACGACAGTGGCTCTTCACATCCAGAG GAGAGGAGATGGCATGTTCGTTTGGCATGGTGCTTGCTTGTTAATGTTGG AGCGCTGAACCGCACGCGCGATTATCAAGCATGCCGCCTGATCGTCCCTC TGAATGTTAATGTTTGCCCTGGCTGTGTGATTTGTTTTGTGTTGTTGTTC GTGTCTTATTTTCTGCCGTTAATTTCATCCAATCCTCCCGCCCCGCCCCC CGCGGCCCTCTAACGCTACAGGCGCTCCAGGATTTCGTGGAGAAGGTCTC GGTCTTCACCCAGGAACCAAACGACCCTCCTGGAGAGGAGGTGTGTGACT CTGTCCGCCTGCCTTTCTGTTTGGCTGTTCCGTCCGTCCGTGTGATTGTT GTCTTGTTTCTTGTGCGTGAGCATTGTGCGTGAACGTATGCATGTCTTTG GTTTTCTGCTCTATTTTTCTCTTGAGAGCTGTTGGAAATGAAACGAACAA TCCATGCTTGTTTACTTTTCCCCTCGTTTTTCCGTAATGACTAGTTTTAA GGGGACACTTTTTTCTTTCGCCATGTAGTTTTGGGCCTTTTCTTTTGTTC GCGTGCGATGTGCCACACGACTTGATACATAAGTCGCAAAACGTTTGGAC ACCTTCCTTCCGTTTGTTGCTCGCAGGGGGGTGTGTGTTTGTGTGTGGCG AGGCGAGGAAGTCGTGGTGGCGCAAGTAGCGCTTGGGAGAGAGACGCTTT TTGTCCCTCAAATCGCACTAAGCTTAACCACCGCTGCTCTCTGCTCTCCC AAAAGGTGTCGGCCATCTTCGCTGAGTACGCGGGCATCCTGGCCAGTGAG GGGGAGACGGAGACGGCCTTCAAGTACATCAAGGGGCAGGGCCAGAACGG CGCCGTTCTTCAGGACAGGTGTGTCCGGGAGGCAACAAACAGAGCACCAA AATGTGTCTGTCAAGCGGGTAATACACCACCGGTGTGTGTCGTGTGTCAG TGTGAGGAGACAAATCAGCAACCAGTGGAAGGATAAGAGACGCGTGCACT AAATTATGAGAAGGGCATCTATCTCCCGCCCGGCTTGTACCTCTCGGTCA CCGTTTTTTTTTGTTTTTGTTTCTGTTCTTCCTGGATTTTTCAAATCATT AATCCGTCCGACGACATCGGCCTTTGCTCCTCGCCTGTGTTTTTGTTTCT TCGTTCTCTCTGTCATTTCGTGTTTGGTCCTTGGTCTGGCGATAGGCTTT ACCACTCGGCACCCCACGCGGCCGGTACCCCCGCCCCGCCGTTTCCCTTC GAGCGAGCGCGTGTCGGGGTTTCCCCCCAGAGCGTTGCTGGCGGCGGTAG CGGAGCGGGGGTGGGAGGAGGAGGCGGGGCTAACGGCGCCACGGCCGGCG GTGGTGGTGCCGGCTCTGCCCGCGCTAGGTCTGACCCACGAGCAAGCACG GCGGCGGGCGGGGGCGGCGACGCTCTCCCTCCGGGCTGGACGCAGATG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13729:26..3073-

>mRNA_E-fasciculatus_F_contig13729.2756.1 ID=mRNA_E-fasciculatus_F_contig13729.2756.1|Name=mRNA_E-fasciculatus_F_contig13729.2756.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1632bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13729:26..3073- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGACACAAAACGGAAACAGCTGCGGGGGCGCGGATCTGTGGGCCAAGAC
CCAAGCCCAGTACTTCGCGCGGGAGTCGCAGCAGCGCCCCTTCCTCAAGG
TGGTGAACGCCATCATCAAGTCCGAGCTGGGGGTCCTCGTGGAGGCGAGC
GATCTCGGGCAGTGGCAGGAGACCCTGGCCATCCTGTCCACGTACGCCAA
GCAGATGACACAAAACGGAAACAGCTGCGGGGGCGCGGATCTGTGGGCCA
AGACCCAAGCCCAGTACTTCGCGCGGGAGTCGCAGCAGCGCCCCTTCCTC
AAGGTGGTGAACGCCATCATCAAGTCCGAGCTGGGGGTCCTCGTGGAGGC
GAGCGATCTCGGGCAGTGGCAGGAGACCCTGGCCATCCTGTCCACGTACG
CCAAGCAGGAGGAGTTCCCTACTCTATGCGAGGCCTTGGCGTCGCGACTG
GAGGCGGAGGCCGGGGACCGCAAGTCGGCTAACCTCTGCTACATGAGGAG
TTCCCTACTCTATGCGAGGCCTTGGCGTCGCGACTGGAGGCGGAGGCCGG
GGACCGCAAGTCGGCTAACCTCTGCTACATGTGCGCGGTGAAGGTGCCCA
AGACGGTGGAGATGTGGGCGGAGGAGCTCAAATCGGCCAACGCAGCCATC
AACGGGGGCACCGACACGAAGGTGCGCGGTGAAGGTGCCCAAGACGGTGG
AGATGTGGGCGGAGGAGCTCAAATCGGCCAACGCAGCCATCAACGGGGGC
ACCGACACGAAGGCGCTCCAGGATTTCGTGGAGAAGGTCTCGGTCTTCAC
CCAGGAACCAAACGACCCTCCTGGAGAGGAGGCGCTCCAGGATTTCGTGG
AGAAGGTCTCGGTCTTCACCCAGGAACCAAACGACCCTCCTGGAGAGGAG
GTGTCGGCCATCTTCGCTGAGTACGCGGGCATCCTGGCCAGTGAGGGGGA
GACGGAGACGGCCTTCAAGTACATCAAGGGGCAGGGCCAGAACGGCGCCG
TTCTTCAGGACAGGTGTCGGCCATCTTCGCTGAGTACGCGGGCATCCTGG
CCAGTGAGGGGGAGACGGAGACGGCCTTCAAGTACATCAAGGGGCAGGGC
CAGAACGGCGCCGTTCTTCAGGACAGGCTTTACCACTCGGCACCCCACGC
GGCCGGTACCCCCGCCCCGCCGTTTCCCTTCGAGCGAGCGCGTGTCGGGG
TTTCCCCCCAGAGCGTTGCTGGCGGCGGTAGCGGAGCGGGGGTGGGAGGA
GGAGGCGGGGCTAACGGCGCCACGGCCGGCGGTGGTGGTGCCGGCTCTGC
CCGCGCTAGGTCTGACCCACGAGCAAGCACGGCGGCGGGCGGGGGCGGCG
ACGCTCTCCCTCCGGGCTGGACGCAGATGGCTTTACCACTCGGCACCCCA
CGCGGCCGGTACCCCCGCCCCGCCGTTTCCCTTCGAGCGAGCGCGTGTCG
GGGTTTCCCCCCAGAGCGTTGCTGGCGGCGGTAGCGGAGCGGGGGTGGGA
GGAGGAGGCGGGGCTAACGGCGCCACGGCCGGCGGTGGTGGTGCCGGCTC
TGCCCGCGCTAGGTCTGACCCACGAGCAAGCACGGCGGCGGGCGGGGGCG
GCGACGCTCTCCCTCCGGGCTGGACGCAGATG
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