mRNA_E-fasciculatus_F_contig1371.2745.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1371.2745.1
Unique NamemRNA_E-fasciculatus_F_contig1371.2745.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1371.2745.1 vs. uniprot
Match: D7FJA8_ECTSI (Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJA8_ECTSI)

HSP 1 Score: 228 bits (582), Expect = 1.860e-69
Identity = 125/187 (66.84%), Postives = 133/187 (71.12%), Query Frame = 1 
Query:  640 PAGEVPAEAGSKVNLTDEHGCTPLYSASFVGNLQCVTELLLAGADMMIANADGNTALEASSELGHVAIVNEFIRHGVLRASPPAASAWVAFTALCAAARSGQPEVADVLIKAGVPPAQEGLRRMGPLSCAASSGKLGVARRVLNASGVVDEKDPHGCTPLIRASQMLRPRLAAFLLASGANPSIRSA 1200
            P  +   +AGSKVNLTD+HGCTPLYSASFV                                     IV EFIRHGVLRASPP  SAWVAFT LCAAARSG P+VADVLI+AGVPPAQEGL RMGPLSCAASS KL VARR+L ASGVVDEKD HGCTPL RASQM+RPRL AFLLASGANPS+RSA
Sbjct:   44 PVAQYLLKAGSKVNLTDDHGCTPLYSASFVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIVKEFIRHGVLRASPPGTSAWVAFTTLCAAARSGHPDVADVLIEAGVPPAQEGLLRMGPLSCAASSKKLEVARRILKASGVVDEKDSHGCTPLNRASQMIRPRLTAFLLASGANPSVRSA 230
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BLAST of mRNA_E-fasciculatus_F_contig1371.2745.1 vs. uniprot
Match: UPI001EE5DB7A (serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE5DB7A)

HSP 1 Score: 60.5 bits (145), Expect = 4.100e-6
Identity = 46/170 (27.06%), Postives = 84/170 (49.41%), Query Frame = 1 
Query:  676 VNLTDEHGCTPLYSASFVGNLQCVTELLLAGADMMIANADGNTALEASSELGHVAIVNEFIRHGVLRASPPAASAWVAFTALCAAARSGQPEVADVLIKAGVPPAQEGLRRMGPLSCAASSGKLGVARRVLNASGV-VDEKDPHGCTPLIRASQMLRPRLAAFLLASGAN 1182
            +    ++G TP+ +A+F G +     LL  GAD+ +A+ DG+  L  +   G+VA+V   +   VL   P  +      T +  AA  G  +V D+L+++G   +     +   L  AA  G + V R +L+ + + +D K  +G T L++A++     +   LL+ G +
Sbjct:  574 IESRGKYGRTPIMTAAFFGRVPVFELLLDLGADLSVADDDGDNILHVACLGGNVAMVEAIVSKDVL---PLESRGTYRRTPVMHAANKGHTDVVDLLVRSGCDLSVMDSNKDNILHVAAKGGSVDVLRYILSQNVLDIDAKGQYGQTALLKAARTHHKNVVDLLLSEGCS 740
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1371.2745.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJA8_ECTSI1.860e-6966.84Similar to ankyrin 2,3/unc44, partial n=1 Tax=Ecto... [more]
UPI001EE5DB7A4.100e-627.06serine/threonine-protein phosphatase 6 regulatory ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1371contigE-fasciculatus_F_contig1371:15001..17866 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.8
Seed ortholog evalue1.8e-16
Seed eggNOG ortholog2880.D7FJA8
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size1232
Cds size546
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1371.2745.1prot_E-fasciculatus_F_contig1371.2745.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1371 15134..17050 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927865.457939-UTR-E-fasciculatus_F_contig1371:15000..151331622927865.457939-UTR-E-fasciculatus_F_contig1371:15000..15133Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1371 15001..15133 +
1695995729.6175637-UTR-E-fasciculatus_F_contig1371:15000..151331695995729.6175637-UTR-E-fasciculatus_F_contig1371:15000..15133Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1371 15001..15133 +
1622927865.5058382-UTR-E-fasciculatus_F_contig1371:17050..174211622927865.5058382-UTR-E-fasciculatus_F_contig1371:17050..17421Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1371 17051..17421 +
1695995729.6475456-UTR-E-fasciculatus_F_contig1371:17050..174211695995729.6475456-UTR-E-fasciculatus_F_contig1371:17050..17421Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1371 17051..17421 +
1622927865.520507-UTR-E-fasciculatus_F_contig1371:17684..178661622927865.520507-UTR-E-fasciculatus_F_contig1371:17684..17866Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1371 17685..17866 +
1695995729.6575854-UTR-E-fasciculatus_F_contig1371:17684..178661695995729.6575854-UTR-E-fasciculatus_F_contig1371:17684..17866Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1371 17685..17866 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927865.4773796-CDS-E-fasciculatus_F_contig1371:15133..153291622927865.4773796-CDS-E-fasciculatus_F_contig1371:15133..15329Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1371 15134..15329 +
1695995729.6290853-CDS-E-fasciculatus_F_contig1371:15133..153291695995729.6290853-CDS-E-fasciculatus_F_contig1371:15133..15329Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1371 15134..15329 +
1622927865.492792-CDS-E-fasciculatus_F_contig1371:16700..170501622927865.492792-CDS-E-fasciculatus_F_contig1371:16700..17050Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1371 16701..17050 +
1695995729.638177-CDS-E-fasciculatus_F_contig1371:16700..170501695995729.638177-CDS-E-fasciculatus_F_contig1371:16700..17050Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1371 16701..17050 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1371.2745.1

>prot_E-fasciculatus_F_contig1371.2745.1 ID=prot_E-fasciculatus_F_contig1371.2745.1|Name=mRNA_E-fasciculatus_F_contig1371.2745.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=182bp
MAVPRFQIGTTYIDCFHTMSHSDAAHVGKMVGLGQVSYVEKLMKAGADPD
GCVKGVPHLVAAARAGRARVIKVLLRAGAKTDAVAEKSKATALATAAITG
HADSAKALAEAGARLGDSECDKYAIHMATIRQDLSIVKALVSGGADLTVG
YPQDLNRCPLHLAVIYGMAPLAKYLLKPARR*
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mRNA from alignment at E-fasciculatus_F_contig1371:15001..17866+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1371.2745.1 ID=mRNA_E-fasciculatus_F_contig1371.2745.1|Name=mRNA_E-fasciculatus_F_contig1371.2745.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2866bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1371:15001..17866+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTGAGAGACAAACTCGAAGGAGGGGTGCTTGTCCTGGCGGAGCCTAAGCC
TTACGCCCGTGTATGCGCGACCATTCCCTCGGGTTTAGCTTCCTCACGTT
ACCAGGCATACCCCACGATTGCATTCCAGCTTTATGGCAGTACCCCGATT
TCAAATCGGGACTACGTATATTGATTGCTTCCACACCATGAGCCATTCGG
ATGCAGCACATGTCGGCAAGATGGTGGGGCTTGGCCAGGTATCGTATGTG
GAGAAGCTGATGAAAGCTGGAGCTGATCCTGATGGGTGCGTAAAGGGGGT
GCCCCACCTCGTCGCTGCGGCACGCGCAGGTACGAATGGTCGAAAACTGC
TGTGTTGGGCGCAAGGGGTAATCGGTCCAACTTCTGTAGCACAACCGATG
CTGCTGCTACGCGTAGGTACATGTAGCTGCTTCGTAGTTACTACTGCAGG
TCTTCATGATGTGTGTATAGATCAGCAGCGTTCTCTGCGTGGAGCTACCA
CTCTAGAGGGACACCTCATTGCTTACATGCTGATGTCCTTTTACGTTGCT
GCCGTGCAAATCGAACGAAGAGAGGAGGCCTTCGTCAGAGCTTCCTTCCG
CGGATCCACACAAACAAGACCACGCCACCTTCCCCGACTGGGCCGTACAT
ATCTCACGTACAAGATATGCGTCTACATGTTTGCCCCAACCACAGAGAAA
GGATCGATCCAGTAATTCCATCACATAAGATGCACCCACCGAGGTTGGGA
AGACGCTTGCGTGACTTGTATGCATACAATTTGACAGTACATTCGGCACC
TACCCGTGATACCGTGGACTAGACTATGCGGTAATTTTCAAGATTTTCGG
AATTGAATGACAGGTTATCAATCGAAGCTTCGAGAAGCTTCGAACTCGAG
AGGTCGATTTCGACACCGATCCAGGATCAACATGCGAGCAGCAAGCAAGG
GAGTCAAAACGTTGTACCGTGCGTGCGTACGTGATTTGTTTAACGCGTGC
AACAAACACAACACCCAATCCCAACATCTTCCTCCTACACCTTCCCAGGA
TGACGTACGGTCAGATGCACAAGGCCACCAAACTGTCTCGTAGAGCCAGT
TGCCCACAGTGGATAATCGCTGTGCGCTGCTCGGGAAACCGTAGAAACAC
TAGTAGTGCTCCGCTAACGCTATGAATCCATTGCTAGTTTATCCTGGACT
CTTATCCGTGGATAGAGATGGATTCGCGGTGTTACATGAAGACAAAAAGA
AAAGGAAAATCCACCCGCATGCAGGTGACACGAGCATGTGGTTGTGTGTT
GTGTGTATTCTTCCAGTTTGTTCTGGCGCCAGCCTACAAACCTGGTGTTA
CGACTGTTAAGCCCGTACACCCGTTTCAAACACTTTTACTTTCATTCTCT
TCGAGGAGCCCCTGCGCAGGTCTAGCACCCAGTAGTCGTCCTCTGCATAG
GGCGGAAAAGCACCTGTCTGTGCGCGAATGACCGCAACCCATCAAATCGT
CGTCTTTGAATCGTTAAACGATGATTCCACGTCCGATTCCGAATGTTTTT
TGGGTCCGGTTGATGGGGTACACCAGTTTCAGCGCTTAACACCAAGTTTC
ATTCATGAGGTGAGGCTCATGTTTCCATTGTGGCCCATTTCACAGGGTCT
GTCCTCCCCCCCTGTCCTTGTAACCCCTGCACTCATCTGTATTTCTGCAG
GACGAGCACGGGTGATAAAAGTGCTTCTTCGAGCGGGTGCCAAGACTGAT
GCAGTGGCTGAAAAATCGAAAGCCACGGCCCTCGCCACCGCCGCCATTAC
GGGGCACGCGGATTCGGCCAAGGCCCTCGCCGAAGCGGGCGCTCGCCTGG
GGGACTCAGAGTGCGACAAATACGCCATCCATATGGCCACCATTAGACAA
GACTTGAGCATAGTGAAAGCTCTAGTCTCCGGGGGTGCTGACCTCACGGT
TGGGTACCCGCAAGACCTCAACCGCTGCCCCCTCCACCTCGCCGTGATCT
ATGGGATGGCCCCGCTGGCGAAGTACCTGCTGAAGCCGGCTCGAAGGTGA
ACTTGACAGACGAACACGGTTGCACACCGCTGTACTCGGCGTCCTTCGTC
GGGAACCTGCAGTGCGTGACCGAGCTGCTTTTGGCCGGGGCCGACATGAT
GATTGCCAACGCCGACGGTAACACCGCTCTCGAAGCGAGCAGCGAGCTCG
GACACGTCGCCATCGTCAACGAATTCATCCGGCACGGAGTTCTGCGTGCT
TCGCCTCCGGCCGCGTCCGCGTGGGTTGCTTTTACGGCTCTGTGCGCAGC
GGCGCGGTCCGGGCAGCCCGAAGTCGCAGACGTATTGATCAAGGCTGGTG
TGCCTCCTGCACAGGAAGGGCTGCGCCGAATGGGACCACTGTCGTGCGCG
GCTTCAAGCGGAAAGCTGGGGGTATGTACATGATTGGACTGACTTGCATG
GACACTGCTGTACCGGACGACAGTGCTGTAGTCTGCTGCACTTGCCACAC
CGGCAATTTAGGATTGCGATGTCGAACATAGCTATTTGCACTCGTCTATC
CGCCCTTTGACACATCCGGTGTAAACGGAATCCCTCTTTCTCATGACCCT
CAAGGGAATGAATCGATCCCGCCCATGCCTTGCTGATGCCTTGCTGAACG
CTTTATTGACGACCTACGTTGTTTGAGACAACAGGTGGCGCGCCGAGTTC
TGAATGCTTCGGGAGTTGTGGATGAGAAAGATCCTCACGGTTGCACGCCC
CTGATCCGTGCGTCACAAATGCTTCGCCCTAGACTGGCCGCATTCCTGCT
GGCGTCTGGAGCGAACCCCAGCATCAGGTCTGCGCGAATAATGTGCATTC
TTGTGTTGCACCTCCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1371:15001..17866+

>mRNA_E-fasciculatus_F_contig1371.2745.1 ID=mRNA_E-fasciculatus_F_contig1371.2745.1|Name=mRNA_E-fasciculatus_F_contig1371.2745.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1092bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1371:15001..17866+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCAGTACCCCGATTTCAAATCGGGACTACGTATATTGATTGCTTCCA
CACCATGAGCCATTCGGATGCAGCACATGTCGGCAAGATGGTGGGGCTTG
GCCAGGTATCGTATGTGGAGAAGCTGATGAAAGCTGGAGCTGATCCTGAT
GGGTGCGTAAAGGGGGTGCCCCACCTCGTCGCTGCGGCACGCGCAGATGG
CAGTACCCCGATTTCAAATCGGGACTACGTATATTGATTGCTTCCACACC
ATGAGCCATTCGGATGCAGCACATGTCGGCAAGATGGTGGGGCTTGGCCA
GGTATCGTATGTGGAGAAGCTGATGAAAGCTGGAGCTGATCCTGATGGGT
GCGTAAAGGGGGTGCCCCACCTCGTCGCTGCGGCACGCGCAGGACGAGCA
CGGGTGATAAAAGTGCTTCTTCGAGCGGGTGCCAAGACTGATGCAGTGGC
TGAAAAATCGAAAGCCACGGCCCTCGCCACCGCCGCCATTACGGGGCACG
CGGATTCGGCCAAGGCCCTCGCCGAAGCGGGCGCTCGCCTGGGGGACTCA
GAGTGCGACAAATACGCCATCCATATGGCCACCATTAGACAAGACTTGAG
CATAGTGAAAGCTCTAGTCTCCGGGGGTGCTGACCTCACGGTTGGGTACC
CGCAAGACCTCAACCGCTGCCCCCTCCACCTCGCCGTGATCTATGGGATG
GCCCCGCTGGCGAAGTACCTGCTGAAGCCGGCTCGAAGGTGAGACGAGCA
CGGGTGATAAAAGTGCTTCTTCGAGCGGGTGCCAAGACTGATGCAGTGGC
TGAAAAATCGAAAGCCACGGCCCTCGCCACCGCCGCCATTACGGGGCACG
CGGATTCGGCCAAGGCCCTCGCCGAAGCGGGCGCTCGCCTGGGGGACTCA
GAGTGCGACAAATACGCCATCCATATGGCCACCATTAGACAAGACTTGAG
CATAGTGAAAGCTCTAGTCTCCGGGGGTGCTGACCTCACGGTTGGGTACC
CGCAAGACCTCAACCGCTGCCCCCTCCACCTCGCCGTGATCTATGGGATG
GCCCCGCTGGCGAAGTACCTGCTGAAGCCGGCTCGAAGGTGA
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