mRNA_E-fasciculatus_F_contig1371.2744.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1371.2744.1
Unique NamemRNA_E-fasciculatus_F_contig1371.2744.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1371.2744.1 vs. uniprot
Match: A0A6H5L7N3_9PHAE (J domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L7N3_9PHAE)

HSP 1 Score: 781 bits (2016), Expect = 4.230e-269
Identity = 499/655 (76.18%), Postives = 519/655 (79.24%), Query Frame = 1 
Query:   37 MPGKPCHYDVLGLERDASDEDIKRVYRKLALFWHPDKNTPDTREEATEVFRLVTEAYAVLGDPKRREKYDREGHPATAGKVDSAATEQRSTPGVAPTAPSAXXXXXXXXXXXXAHASQQAHGGWGVPGGEGAWQGMPVGGGYDQYDQGVXXXXXQAWMQ--QXXXXXXXPYPFQQAPSPFMHQQQFHQGGHFPPQPESAYAYGNQFAQQPXXXXXXXXQYQQQAPPSWGTYDYDDRGAGSYGAPASALLAPSLPPEPASAPPSTTELAXXXXXXXXXXXXXYPNGFPHQAAXXXGXXXXXXXXX------FPHHGAQSYALPPAAVAPPSTYPPSSEPERAXXXXXXXXXXXXXXXXESSDSSESEDGDQDLAVARYESRSPERRVXXXXXXXXXXXXXXXXXRSIFRRGSKKEPYPTETRYVPPQPARLNGNYYPKETRGREEGQQRPQHHERPGLSRGSSGLVLKLHVGATPRDGAPPPPTSVGPRRSSSTNSRGGSEGSMGGLLQEVDRMFSTVMGGGMFGAGVSLDVAGEGSXXXXXXXXXXXXXXXXXXXXXGARASMMSSHTVVDGRSRTLFARTERTVVNTDGTRETNVQEYVNNQAGGGSRRGRGTSASGSRRXXXXERAPSAAGASESGKSATSSKRHSLKSFFGR 1977
            MPGKPCHYDVLGLER ASDEDIKRVYRKLALFWHPDKN P+TREEA EVFRLVTEAYAVLGDPKRREKYDREGHP TA    SAAT++RS+ GVAPT P        XXXXXX   SQQ HGGWGVPGGEGAWQGMPVGGGYDQ   GVXXXXXQAWMQ  QXXXXXXX  PFQ APSPFMHQQQFHQGGHFPP PESAYAYGNQF QQP        QYQQ APPSW  Y++DDRGAGSYGAPASAL+APSLPPEP+SA PST ELA             YPNGFPHQAA   G               FPH GAQSYALPPAAVAPPSTYPPSSE    XXXXXXXXXXXXXXXXESSDSSESEDGDQDLAVAR E R+ ER  XXXXXXXXXXXXXXXXX      GSKK PYPTETRYVPPQP RLNGNYYPKETR + E +QRPQH+ERPGLSRGSSGLVL+L VGA PRDGAPPPPTSVGPRRSSSTNSRGGS+GSMGGLLQEVDRMFSTVMGGG+ G G+SL V GE S                       RASMMSSHTVVDGRSRTLFARTERTVVNTDGTRETNVQEYVNN+ GGGS +GRGTSASGS R    ERAPSAAG SESG+SATSS+RHSLKS FGR
Sbjct:    1 MPGKPCHYDVLGLERGASDEDIKRVYRKLALFWHPDKNPPETREEAAEVFRLVTEAYAVLGDPKRREKYDREGHPPTASAAGSAATDKRSSAGVAPTTPPVPASPPAXXXXXXXXXSQQGHGGWGVPGGEGAWQGMPVGGGYDQ---GVXXXXXQAWMQHQQXXXXXXXXXPFQHAPSPFMHQQQFHQGGHFPPPPESAYAYGNQFVQQPYPFQQQQQQYQQHAPPSWSGYNFDDRGAGSYGAPASALVAPSLPPEPSSARPST-ELALQEDSPPAAGAGTYPNGFPHQAAAPLGTVAPLGMVAHHGGGGFPHPGAQSYALPPAAVAPPSTYPPSSEHVSTXXXXXXXXXXXXXXXXESSDSSESEDGDQDLAVARSEPRTAERXXXXXXXXXXXXXXXXXXXXXXXXXGSKKTPYPTETRYVPPQPERLNGNYYPKETRRQGE-EQRPQHYERPGLSRGSSGLVLQLRVGAKPRDGAPPPPTSVGPRRSSSTNSRGGSDGSMGGLLQEVDRMFSTVMGGGLLGGGISLGVDGERSGRGQSRGFSVDSGSSRGAGGGATRASMMSSHTVVDGRSRTLFARTERTVVNTDGTRETNVQEYVNNRDGGGSYKGRGTSASGSHRSSGSERAPSAAGQSESGRSATSSRRHSLKSLFGR 650
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1371.2744.1 vs. uniprot
Match: D8LSR9_ECTSI (Heat shock protein 40 like protein/ DnaJ domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSR9_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 5.350e-23
Identity = 53/93 (56.99%), Postives = 68/93 (73.12%), Query Frame = 1 
Query:   37 MPGKPCHYDVLGLERDASDEDIKRVYRKLALFWHPDKNTPDTREEATEVFRLVTEAYAVLGDPKRREKYDREGHPATAGKVDSAATEQRSTPG 315
            M GKPCHY+VLGLER AS  ++K+ YRK AL+WHPDKN P+ R++ATE+FRLV+EAY VLGDP+++  YD  GH   A      A +Q+S  G
Sbjct:    1 MAGKPCHYEVLGLERSASSGEVKKAYRKKALYWHPDKN-PNNRDQATEMFRLVSEAYEVLGDPEKKRFYDTYGHEGVAS-----AEQQQSAEG 87
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1371.2744.1 vs. uniprot
Match: A0A6H5JJG7_9PHAE (HSP40 like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJG7_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 6.020e-23
Identity = 52/93 (55.91%), Postives = 67/93 (72.04%), Query Frame = 1 
Query:   37 MPGKPCHYDVLGLERDASDEDIKRVYRKLALFWHPDKNTPDTREEATEVFRLVTEAYAVLGDPKRREKYDREGHPATAGKVDSAATEQRSTPG 315
            M GKPCHY+VLGL R AS  ++K+ YRK AL+WHPDKN P+ R++ATE+FRLV+EAY VLGDP+++  YD  GH   A      A +Q+S  G
Sbjct:    1 MAGKPCHYEVLGLARSASSGEVKKAYRKKALYWHPDKN-PNNRDQATEMFRLVSEAYEVLGDPEKKRFYDTYGHEGVAS-----AEQQQSAEG 87
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1371.2744.1 vs. uniprot
Match: A0A183LEN6_9TREM (J domain-containing protein n=7 Tax=Schistosoma TaxID=6181 RepID=A0A183LEN6_9TREM)

HSP 1 Score: 95.5 bits (236), Expect = 7.460e-18
Identity = 42/76 (55.26%), Postives = 58/76 (76.32%), Query Frame = 1 
Query:   52 CHYDVLGLERDASDEDIKRVYRKLALFWHPDKNTPDTREEATEVFRLVTEAYAVLGDPKRREKYDREGHPATAGKV 279
            C+Y +LG+E+ AS ++IK+ YR+LAL WHPDKN PD +EEA + F+L++EAY VL DPK+R+ YDR G    AG+ 
Sbjct:    5 CYYKILGIEKTASGDEIKKAYRRLALKWHPDKN-PDKKEEAEKCFKLISEAYEVLSDPKKRDIYDRRGRGPHAGEA 79
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1371.2744.1 vs. uniprot
Match: UPI00077A2B8B (dnaJ homolog subfamily B member 6-B-like n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A2B8B)

HSP 1 Score: 89.4 bits (220), Expect = 1.870e-17
Identity = 39/67 (58.21%), Postives = 55/67 (82.09%), Query Frame = 1 
Query:   55 HYDVLGLERDASDEDIKRVYRKLALFWHPDKNTPDTREEATEVFRLVTEAYAVLGDPKRREKYDREG 255
            +YDVLG+ +++SD+DIK+ YRKLAL WHPDKN PD +++A E F+ ++EAY VL DP++R+ YDR G
Sbjct:    4 YYDVLGVPKNSSDQDIKKAYRKLALKWHPDKN-PDNKQQAEENFKEISEAYDVLSDPEKRQVYDRYG 69
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1371.2744.1 vs. uniprot
Match: A0A5K4F853_SCHMA (J domain-containing protein n=2 Tax=Schistosoma mansoni TaxID=6183 RepID=A0A5K4F853_SCHMA)

HSP 1 Score: 93.6 bits (231), Expect = 3.390e-17
Identity = 40/76 (52.63%), Postives = 57/76 (75.00%), Query Frame = 1 
Query:   52 CHYDVLGLERDASDEDIKRVYRKLALFWHPDKNTPDTREEATEVFRLVTEAYAVLGDPKRREKYDREGHPATAGKV 279
            C+Y +LG+++ AS ++IK+ YR+LAL WHPDKN PD +EEA + F+L++EAY VL DPK+R+ YDR G     G+ 
Sbjct:    5 CYYKILGIKKTASSDEIKKAYRRLALKWHPDKN-PDKKEEAEKCFKLISEAYEVLSDPKKRDMYDRRGRDPHIGEA 79
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1371.2744.1 vs. uniprot
Match: G5DZA0_9PIPI (Putative dnaj subfamily b member 6 (Fragment) n=1 Tax=Pipa carvalhoi TaxID=191480 RepID=G5DZA0_9PIPI)

HSP 1 Score: 89.0 bits (219), Expect = 4.940e-17
Identity = 43/73 (58.90%), Postives = 53/73 (72.60%), Query Frame = 1 
Query:   55 HYDVLGLERDASDEDIKRVYRKLALFWHPDKNTPDTREEATEVFRLVTEAYAVLGDPKRREKYDREGHPATAG 273
            +YDVLG++R+AS EDIK+ YRKLAL WHPDKN P+ +EEA   F+ V EAY VL D K+R+ YDR G     G
Sbjct:    4 YYDVLGVQRNASPEDIKKAYRKLALKWHPDKN-PENKEEAERRFKEVAEAYEVLSDAKKRDIYDRYGKEGLTG 75
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1371.2744.1 vs. uniprot
Match: A0A7S0M9M1_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M9M1_9CRYP)

HSP 1 Score: 88.2 bits (217), Expect = 7.120e-17
Identity = 43/75 (57.33%), Postives = 52/75 (69.33%), Query Frame = 1 
Query:   34 AMPGKPCHYDVLGLERDASDEDIKRVYRKLALFWHPDKNTPDTREEATEVFRLVTEAYAVLGDPKRREKYDREGH 258
            AMP   CHY+VLG+ RDAS  DI R Y+K AL WHPDKN PD + EA  +F+L+ EA  VL DP +R  YD+ GH
Sbjct:    2 AMPR--CHYEVLGVSRDASQADIMRAYKKQALKWHPDKN-PDRQTEAERMFKLINEAQQVLTDPDKRAHYDQYGH 73
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1371.2744.1 vs. uniprot
Match: A0A0S7LUK1_9TELE (DJC21 (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7LUK1_9TELE)

HSP 1 Score: 87.8 bits (216), Expect = 8.180e-17
Identity = 38/65 (58.46%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:   52 CHYDVLGLERDASDEDIKRVYRKLALFWHPDKNTPDTREEATEVFRLVTEAYAVLGDPKRREKYD 246
            CHY++LG++RDA D+D+K+ YRKLAL WHPDKN  +  EEA E F+L+  AY VL DP+ R  YD
Sbjct:    5 CHYEILGVKRDAGDDDLKKAYRKLALKWHPDKNL-ENAEEAAEQFKLIQAAYDVLSDPQERAWYD 68
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1371.2744.1 vs. uniprot
Match: Q86F63_SCHJA (DnaJ subfamily B member 6-A n=4 Tax=Schistosoma japonicum TaxID=6182 RepID=Q86F63_SCHJA)

HSP 1 Score: 92.0 bits (227), Expect = 1.160e-16
Identity = 39/68 (57.35%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:   52 CHYDVLGLERDASDEDIKRVYRKLALFWHPDKNTPDTREEATEVFRLVTEAYAVLGDPKRREKYDREG 255
            C+Y++LG+ + AS +DIK+ YR+LAL WHPDKN PD +EEA   F+L++EAY +L DPK+R  YDR G
Sbjct:    5 CYYEILGVHKTASGDDIKKAYRRLALKWHPDKN-PDKKEEAERQFKLISEAYEILSDPKKRNIYDRRG 71
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1371.2744.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7N3_9PHAE4.230e-26976.18J domain-containing protein n=2 Tax=Ectocarpus Tax... [more]
D8LSR9_ECTSI5.350e-2356.99Heat shock protein 40 like protein/ DnaJ domain co... [more]
A0A6H5JJG7_9PHAE6.020e-2355.91HSP40 like protein n=1 Tax=Ectocarpus sp. CCAP 131... [more]
A0A183LEN6_9TREM7.460e-1855.26J domain-containing protein n=7 Tax=Schistosoma Ta... [more]
UPI00077A2B8B1.870e-1758.21dnaJ homolog subfamily B member 6-B-like n=1 Tax=A... [more]
A0A5K4F853_SCHMA3.390e-1752.63J domain-containing protein n=2 Tax=Schistosoma ma... [more]
G5DZA0_9PIPI4.940e-1758.90Putative dnaj subfamily b member 6 (Fragment) n=1 ... [more]
A0A7S0M9M1_9CRYP7.120e-1757.33Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A0S7LUK1_9TELE8.180e-1758.46DJC21 (Fragment) n=1 Tax=Poeciliopsis prolifica Ta... [more]
Q86F63_SCHJA1.160e-1657.35DnaJ subfamily B member 6-A n=4 Tax=Schistosoma ja... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1371contigE-fasciculatus_F_contig1371:8323..14874 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score763.1
Seed ortholog evalue1.1e-217
Seed eggNOG ortholog2880.D7FJA7
EggNOG free text desc.zinc ion binding
EggNOG OGsKOG0717@1,KOG0717@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDnaJ domain containing protein
Ec32 orthologEc-12_008240.1
Exons6
Model size3485
Cds size1944
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1371.2744.1prot_E-fasciculatus_F_contig1371.2744.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1371 9828..14838 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927865.3024695-UTR-E-fasciculatus_F_contig1371:8322..98271622927865.3024695-UTR-E-fasciculatus_F_contig1371:8322..9827Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1371 8323..9827 -
1695995729.5317392-UTR-E-fasciculatus_F_contig1371:8322..98271695995729.5317392-UTR-E-fasciculatus_F_contig1371:8322..9827Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1371 8323..9827 -
1622927865.4083574-UTR-E-fasciculatus_F_contig1371:14838..148741622927865.4083574-UTR-E-fasciculatus_F_contig1371:14838..14874Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1371 14839..14874 -
1695995729.6081643-UTR-E-fasciculatus_F_contig1371:14838..148741695995729.6081643-UTR-E-fasciculatus_F_contig1371:14838..14874Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1371 14839..14874 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927865.3200564-CDS-E-fasciculatus_F_contig1371:9827..98981622927865.3200564-CDS-E-fasciculatus_F_contig1371:9827..9898Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1371 9828..9898 -
1695995729.5440016-CDS-E-fasciculatus_F_contig1371:9827..98981695995729.5440016-CDS-E-fasciculatus_F_contig1371:9827..9898Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1371 9828..9898 -
1622927865.3393815-CDS-E-fasciculatus_F_contig1371:10360..104721622927865.3393815-CDS-E-fasciculatus_F_contig1371:10360..10472Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1371 10361..10472 -
1695995729.5537627-CDS-E-fasciculatus_F_contig1371:10360..104721695995729.5537627-CDS-E-fasciculatus_F_contig1371:10360..10472Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1371 10361..10472 -
1622927865.3522484-CDS-E-fasciculatus_F_contig1371:11060..123501622927865.3522484-CDS-E-fasciculatus_F_contig1371:11060..12350Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1371 11061..12350 -
1695995729.5639467-CDS-E-fasciculatus_F_contig1371:11060..123501695995729.5639467-CDS-E-fasciculatus_F_contig1371:11060..12350Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1371 11061..12350 -
1622927865.3667483-CDS-E-fasciculatus_F_contig1371:12984..132901622927865.3667483-CDS-E-fasciculatus_F_contig1371:12984..13290Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1371 12985..13290 -
1695995729.5737295-CDS-E-fasciculatus_F_contig1371:12984..132901695995729.5737295-CDS-E-fasciculatus_F_contig1371:12984..13290Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1371 12985..13290 -
1622927865.3820212-CDS-E-fasciculatus_F_contig1371:13686..137461622927865.3820212-CDS-E-fasciculatus_F_contig1371:13686..13746Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1371 13687..13746 -
1695995729.5829928-CDS-E-fasciculatus_F_contig1371:13686..137461695995729.5829928-CDS-E-fasciculatus_F_contig1371:13686..13746Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1371 13687..13746 -
1622927865.3936355-CDS-E-fasciculatus_F_contig1371:14733..148381622927865.3936355-CDS-E-fasciculatus_F_contig1371:14733..14838Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1371 14734..14838 -
1695995729.5982149-CDS-E-fasciculatus_F_contig1371:14733..148381695995729.5982149-CDS-E-fasciculatus_F_contig1371:14733..14838Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1371 14734..14838 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1371.2744.1

>prot_E-fasciculatus_F_contig1371.2744.1 ID=prot_E-fasciculatus_F_contig1371.2744.1|Name=mRNA_E-fasciculatus_F_contig1371.2744.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=648bp
MPGKPCHYDVLGLERDASDEDIKRVYRKLALFWHPDKNTPDTREEATEVF
RLVTEAYAVLGDPKRREKYDREGHPATAGKVDSAATEQRSTPGVAPTAPS
APTPPPAAPTYPPAHASQQAHGGWGVPGGEGAWQGMPVGGGYDQYDQGVG
GGYDQAWMQQQQQQQQQPYPFQQAPSPFMHQQQFHQGGHFPPQPESAYAY
GNQFAQQPYPFQHQHQQYQQQAPPSWGTYDYDDRGAGSYGAPASALLAPS
LPPEPASAPPSTTELALQQDSPPAGGGAAYPNGFPHQAAAAHGIVAHHGG
GGFPHHGAQSYALPPAAVAPPSTYPPSSEPERALPPAARAPPSTYPPSSE
SSDSSESEDGDQDLAVARYESRSPERRVATTESRAPESRVATTSGRSIFR
RGSKKEPYPTETRYVPPQPARLNGNYYPKETRGREEGQQRPQHHERPGLS
RGSSGLVLKLHVGATPRDGAPPPPTSVGPRRSSSTNSRGGSEGSMGGLLQ
EVDRMFSTVMGGGMFGAGVSLDVAGEGSGRGQSRGFSVGSGSSRGAGGGG
ARASMMSSHTVVDGRSRTLFARTERTVVNTDGTRETNVQEYVNNQAGGGS
RRGRGTSASGSRRSSGSERAPSAAGASESGKSATSSKRHSLKSFFGR*
back to top

mRNA from alignment at E-fasciculatus_F_contig1371:8323..14874-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1371.2744.1 ID=mRNA_E-fasciculatus_F_contig1371.2744.1|Name=mRNA_E-fasciculatus_F_contig1371.2744.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=6552bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1371:8323..14874- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCACGCCTGCCTGCGCTGCACAGAGAGAGGAAGCCATGCCGGGCAAGCC
GTGCCACTATGATGTCCTTGGCCTTGAGCGAGATGCGAGCGATGAGGATA
TCAAACGGGTGTACCGCAAGCTGGCGCTCTTTTGGCATCCGGTGAGAGGA
GGCAACGAGAAAACGTGTTTGTCTTTTGTGTCTTTTTTGTGCACAACAAC
AAATGGATACTCATGCGGAGCCTCGGCTGCGCGCTCCCGCCGGCCCTTCT
TCAACAACACCAACCCTTCCCGCAGTGTGGGTGACATTTTTCTGGGGGGT
GTTGCTGCTGTGTTCAATTTCTTTCTTGGCCTAGAGTGGGTTTTCGTTGT
GCTGCCTGTCCAGCCACGTCCACGTCCAGCTCATCCTCTATTGGTTTGAC
GGAAAGGCGGAGTTTTCGGGAATCGGCGGGAACGGCGTTCCACAGAACAG
ACCGAGGACTGACCTCGCCATTTGAAGCAGCCGCTGCTATGCATACGTGT
CAGGGGTATCGATCGGTGGTGTTATGCGATTTTTCTCTTGGAGGTACTTG
CCTTCCGAAAGTAAGCAGCAAGGACCACGGAAAGACCCTCCCCGGCTCTG
TTGAAGTTGCCATAACCGGCTCCGGTCAAGAGTCAAAAGCGTCTTTTTTT
TTTTGTTGTTTCACCTGTGACCCTGTGACGTCGTGCACGAACGAACCACC
CACAGCCGGGGGGGTTGTGATGTACCTGATTGAAGTGTGCCTTCTCCAGA
ACATCGGAAATATCGACAATTGATTGGCGACTCGCTGGGTCTGAATTGAA
CGCACGCAAGTGGCTTCTAGATGCAGCATTGGGGAGGTGCTTCATTTCAA
CCAAACTGAAACAACTGCGCTGCAACTTGATTGCTCCGCACTTTCGGGAA
GTTCACGAGTTCAAAACGCCCCCCTTCTCCCGCTTATAGTCACATTGGTC
GACTAACTGCACGGTGTTCTTTCGGATGGCCGCAGCTCGTAGCGCGACTG
CTGTGTCGAAATCAAGTGTGTTCATTGCAGAATATCCAGCGCTGTTGCTC
AACTCTGCCGATGCGCCTACACTTGTAGTTCCAACCTCTCTTCCTTATGT
TAAAGCCCGCTACATATTCTGCACGCAGGACAAAAACACGCCGGACACGA
GGGAGGAGGCAACAGAGGTGTTCAGGCTAGTCACAGAGGTGCGCGCACAG
CTGTGTATTACGGAGTAGGGTTGACAGTTTCCGCGGGGGGGGGCGTTGAA
CGGGATGAACGCTGCTACGAGAGGCTACCGTTGGTTTCCTATAAGACTGG
ATTGACGGACACACCGCTTTTCGCTACTAGTGGAGCGGGATGCGCCATCA
CTGCATCGTGTTCGTTGACACAGCGTCTGGATGTTGTCGATGTGCGGAGT
TCCGCCGCGTTACAGCAGTAGATCCTCTTCCCTTCGACGTGTCCGATCAT
CGTTCTTTAGAGACAGCAGTGTCATGGGAAAGGTGATCTTAGCTGCTGCT
GCTTCTGCTGCTAGCTACTACAGACGGCCTTCGCTGCTGCACCCCCCTTG
CAATGCTACTATGCTCTCCTGCTCCCACTATCAGGCGTACGCTGTACTGG
GAGATCCGAAGCGGAGAGAAAAGTACGACCGCGAGGGTCACCCGGCGACG
GCTGGCAAGGTTGATTCCGCCGCAACAGAACAACGCTCGACCCCTGGCGT
CGCCCCTACGGCGCCGTCTGCGCCCACTCCCCCCCCTGCCGCACCCACCT
ACCCTCCAGCACATGCTTCTCAGCAAGCGCATGGCGGGTGGGGTGTCCCC
GGCGGTGAGGGAGCGTGGCAAGGCATGCCTGTCGGTGGCGGCTATGACCA
GTATGACCAGGGTGTCGGTGGTGGCTACGACCAGGCCTGGGTGAGAACTT
CACCTGCCCTTTGGGTGGTACGGGGTTTACGGCTCACCAGCTGTTATTCT
TTGCGGTTGGTTCCCAGTCGTGGTTTGCCTCACGTTTCGTGTGTTTTGCG
GCGTGATCGCCCGTTCAATACTTGAGTGACGTCCAGGCAGCTAGTCAGAG
AAACGTGTGGGAAAGTAGTGTGCCGTTCGGGTCGGTATGCATACGAACCT
ACACAGCAGTAGTTGGTTGTTCAGACGCTTCCACACGAGCATTCGTCTCT
TGATTGAAGGCAGGGTACTTGTAGATGCCAACTTTTGTGCGCGTGACCAT
GAAGACTGTCGGTTGGTGTTTTCGCCAAGTTTTTCCCCGATATCCTTGTC
CTTTGCAAAGCGAAATGGATTCATCTCGAATCATGACAACGCCTATATGG
CGACGGTGTTGCCTCTGTCGTCTGGCATGATCGGGAAACTCCACACTTCC
TAGTTCGTGTCGCAGTCTTGCCGTAGCAGGGCGCGGGAAGTGTAGAGCTC
TTCCCAAGCAACATGGGAGGCTTACCTTGAGCCATGCGTGCAGCCATCTT
GTCCTCGAGGAGCAATCAATTGATGCAGACATGCCTCTTCCCCTCCCTAC
CCCGACGTGTTCCTCGATACGCAGATGCAACAGCAGCAGCAGCAGCAGCA
GCAGCCATACCCGTTCCAGCAGGCCCCCTCCCCGTTCATGCATCAACAGC
AGTTCCATCAAGGCGGCCACTTTCCCCCACAGCCTGAGAGCGCCTACGCC
TACGGCAACCAGTTTGCCCAGCAGCCGTATCCCTTTCAGCATCAGCATCA
GCAATACCAACAGCAAGCGCCGCCTTCGTGGGGAACGTACGACTACGACG
ACCGTGGCGCGGGCAGCTACGGCGCCCCCGCTTCAGCTCTTTTAGCGCCA
TCCCTACCCCCCGAACCCGCCTCGGCACCCCCTTCGACGACGGAACTGGC
GTTGCAGCAAGATTCGCCCCCGGCAGGGGGGGGTGCTGCTTACCCCAACG
GGTTCCCGCACCAGGCAGCTGCTGCTCATGGCATTGTCGCCCATCACGGT
GGCGGTGGGTTCCCGCACCACGGAGCCCAGTCGTACGCCCTGCCTCCTGC
GGCCGTGGCGCCGCCGAGTACCTACCCGCCGAGCTCCGAGCCCGAAAGGG
CACTCCCGCCGGCTGCTCGCGCGCCCCCCAGCACGTACCCACCAAGCTCG
GAATCCTCGGATAGCTCGGAGTCGGAAGACGGCGACCAGGACCTTGCCGT
TGCCCGTTACGAGTCACGGAGCCCGGAACGCAGGGTGGCAACGACCGAGT
CACGCGCCCCAGAGAGCAGAGTGGCAACAACCTCCGGGCGCAGTATTTTC
CGCCGCGGCTCTAAGAAGGAGCCTTACCCAACGGAAACCCGATACGTACC
GCCCCAGCCCGCCCGACTGAACGGCAACTACTACCCGAAGGAGACACGGG
GACGGGAGGAGGGGCAGCAGCGGCCGCAGCATCACGAGAGACCCGGTCTA
AGTCGCGGTAGTTCTGGGTTAGTGCTCAAGCTTCATGTCGGGGCGACACC
GCGGGACGGGGCTCCGCCCCCACCGACGTCTGTGGGACCCCGCCGCAGCA
GCAGTACCAATTCTCGGGGCGGCTCTGAGGGCAGCATGGGCGGACTTTTG
CAAGAGGTGGACCGCATGTTTTCCACAGTGATGGGGGGAGGCATGTTCGG
CGCTGGGGTCAGCCTGGACGTTGCAGGGGAAGGTTCCGGTAGGGGTCAGA
GCCGCGGCTTCAGCGTTGGCAGTGGCAGCAGTCGAGGGGCTGGAGGTGGA
GGTGCACGGGCCTCCATGATGTCGAGCCACACAGTGGTAGACGGTAGGTC
CAGGACCCTTTTTGCCCGCACGGAACGGACTGTGGTGAACACCGACGGCA
CGCGGGAAACCAACGTGAGTTTTATCCATCCGACAACAAGGTGTGTGTGA
AGTCTACGTGCCCGTTGTATAGGGTGCTGTTGCAGTGGGCTGAATAGTTC
ATTGGTTGCGCCTTTGTTCTGTTTCAAGCTTGGACTCGGCAAGAGCAGCG
GCATGTGGCTCGTCCTTCAGGCCGGACTCCGGTTTTTCTGGGAACCTGTT
CTTCGTAGACTGCCGTGCCTACTTGAACCCGTGCTTGCTTTGATTCCACC
CGCTTGAGCAAAGTGAGGCACATCAGCTCTCGGTAATGCGGTTGCATCTA
CTGTACATAAGCCCTTACTACGTCTATGAATACGACGTGACACATATATT
CTGACGACACCCCACGCTTGTGTGGCTCACACGTGCCACACATCACAAAA
CACCGTGAGCAGGAGATAGGTGAGATGGTCATCTCCTTGCTCCCAACTCA
TAGTGACGCGAGCCTGGCCCGCATTCTCCGTCCCCCCATCGTTGCCGCTC
TATGCACATGCAAAAGAAGAACCCACCTCCAACGACGCTCCTTTCGCCAC
CATCCCAACGCCACGTGCATGCTCGAACCCTTTCGCGCCGCTTTTTCGAC
AGGTCCAAGAATACGTGAACAACCAGGCCGGGGGGGGGTCGCGTAGAGGG
AGGGGGACGAGCGCTAGCGGCAGCCGTAGATCGTCGGGAAGTGAACGAGC
TCCGTCAGCGGCAGGTGCGTGACCAGAGAATCTTGGAACCAGGAGTTGGA
GCACCTATCGACCCCCGGTTTCGAATGACGCTTCTCTCGTTCTTACCAGC
CGACGTATGCTTTCCCCTCACATGTATGACGCGTGGGGAACGTGGCGAAG
ATTTGTCCTTACTCTTGTTGTTGCGGGCGGGGGTTATATGCTCGTGGTGG
TGCCCTGAGATCGGCGTTCCCGTCGTACAAGTGCAAACTTGCAAGTACGT
GTGGCCTTGCTTCTTAGCTGAAGGAGCGTGATCGGGTTCATTATCGAGTT
GAGGATTTGCCCCGTTCAGGTACACAGCGCCTGGTGACGATGGGCATGAG
AGATGTTCTCCATGGATAACTGGAAACCGCACGTCTGGAGGCCGTGCTGG
TGCTGTCCGTTTCTCGTCGAACACGTGTTGACAGCGTTTGTTTTGGTTGC
CGCCCGGAATGTGTGCGACTTTTCAGGTGCAAGCGAAAGCGGCAAGAGCG
CCACCTCCAGCAAGAGGCACAGCTTAAAGAGCTTTTTTGGGAGATGAAAC
AGCGACGGCGGTCGTCCATGGACAGTGGAGACACCGGCGATTCGAGCGTG
CTGTGTAGGCCCGAGAGTAGGGCTTGTTTTATTTTGGTATGCTTTCACGT
GTTGTATGAAAACGCTGCATGCAGTACTGTCCGACTTGCTGATTTTTATT
GCCGGCAGATTATTCCACAACTGTATCATCTTCATGGGCTGTTTATTGAA
ATACCTTTTGCGAGTGACCTGGTGAGAAAAGCAAGAACGAAGCCGTGTCG
ACATCGAAGGGGGCACATCTAACTGGAGTAGTGGACTGGCGTACATGTTT
TACTTGCTCTGCCGAGTTTCTTGGGCAGATGGTGCGTAGCAGCAGACAAG
GTTTTGTTGAAAGGATGCCTTCGTCCATTGGCTTCTGCCCCGTGTACCTC
GCATGCAGGTTCCAAGACGAAAGGGGACGATGCAGTTGTTTTGTCGTATT
TATTGGTGGTTTGAAATGTTTGTGTGCTTCGAAGGCCCCGCGATAGGTGG
GGTGCCATGCAGAGGACGGTAGCGGTTCATTGGATTTTAATTTGAACAGT
TGAAGAGGGGACGCAGCTGGGTTTTGTGGTTGCATGTTCCGGCGAGGTAT
GCGTGAAGCATTGTTTCACATTTGGTATGGTGGTTAGTAGGCGTTCGTCG
GATGCGCTGCTTTGACCAATTTCATTTCTAGTCTTGCCTGATGTACCCTG
TATTTTAAATCCTTTGTACCACAGGCTTGATTGGCTTGTACAAAAGATCA
ACGTGCTTGTTTGGTTTGAGGGTTGTTTTTGTGTGCCGTCGTTTCGAGGA
AGATGCCCCGACCAGGGGCAGTTTGCAGTGCTTAACACCGAGTGCTTGAT
TCACACCTGCGTTGTCGAAGGACGATGGTGCTATCATGTCGTGTGAGCAC
GTCTAAATTTAAGAGCATCATCTTGAACATTGGGGAGGCAAACTGTTCCT
TTGATTGGTTCCGATTCTGGGTTAGCAATCTCTTCCGCTTATGCACACGA
CCACGAGACAGATGGTTGGATGAGTTCTTTATTTTCCCGAGACTCAAATT
CATTCATGGTGTTGCTCGGACACTGCGAGCTGCGGCACTGACTGGAAAAG
ACGCGAGAAGCAGTCTCTTTCACACCACACGTTCATGCAGCGATGATCGC
CATGATTGATCAACCCCCACGTTCACCTCTCTCTGTGTCCCTATCGCAGC
CGTTGCACCCGAAGGACTGCGCAGGATACTTCACTTGGCGGAGTGCCACT
CTCTCTCCCGTACAAGGATATGTCAAGAAGAGAACCGGATTATTCTTGGA
AGCCATCGGCACAGCAGCATGACAAGCCATCTCCCAAAGTGGATCCTTTT
CGAATGTCGAGGGCATTAGTTCATGGCACGCGCGACGGGCCATTCTCTTC
ATTGCTTAGTTGACTCGGAGGGCTACCATACACCAATATTCTTGTCGCAT
AGTCTTAGCGTTGTGAATATATACATGCGGGAGAAGTGATAAACGAGCAC
CC
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1371:8323..14874-

>mRNA_E-fasciculatus_F_contig1371.2744.1 ID=mRNA_E-fasciculatus_F_contig1371.2744.1|Name=mRNA_E-fasciculatus_F_contig1371.2744.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3888bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1371:8323..14874- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCGGGCAAGCCGTGCCACTATGATGTCCTTGGCCTTGAGCGAGATGC
GAGCGATGAGGATATCAAACGGGTGTACCGCAAGCTGGCGCTCTTTTGGC
ATCCGATGCCGGGCAAGCCGTGCCACTATGATGTCCTTGGCCTTGAGCGA
GATGCGAGCGATGAGGATATCAAACGGGTGTACCGCAAGCTGGCGCTCTT
TTGGCATCCGGACAAAAACACGCCGGACACGAGGGAGGAGGCAACAGAGG
TGTTCAGGCTAGTCACAGAGGACAAAAACACGCCGGACACGAGGGAGGAG
GCAACAGAGGTGTTCAGGCTAGTCACAGAGGCGTACGCTGTACTGGGAGA
TCCGAAGCGGAGAGAAAAGTACGACCGCGAGGGTCACCCGGCGACGGCTG
GCAAGGTTGATTCCGCCGCAACAGAACAACGCTCGACCCCTGGCGTCGCC
CCTACGGCGCCGTCTGCGCCCACTCCCCCCCCTGCCGCACCCACCTACCC
TCCAGCACATGCTTCTCAGCAAGCGCATGGCGGGTGGGGTGTCCCCGGCG
GTGAGGGAGCGTGGCAAGGCATGCCTGTCGGTGGCGGCTATGACCAGTAT
GACCAGGGTGTCGGTGGTGGCTACGACCAGGCCTGGGCGTACGCTGTACT
GGGAGATCCGAAGCGGAGAGAAAAGTACGACCGCGAGGGTCACCCGGCGA
CGGCTGGCAAGGTTGATTCCGCCGCAACAGAACAACGCTCGACCCCTGGC
GTCGCCCCTACGGCGCCGTCTGCGCCCACTCCCCCCCCTGCCGCACCCAC
CTACCCTCCAGCACATGCTTCTCAGCAAGCGCATGGCGGGTGGGGTGTCC
CCGGCGGTGAGGGAGCGTGGCAAGGCATGCCTGTCGGTGGCGGCTATGAC
CAGTATGACCAGGGTGTCGGTGGTGGCTACGACCAGGCCTGGATGCAACA
GCAGCAGCAGCAGCAGCAGCAGCCATACCCGTTCCAGCAGGCCCCCTCCC
CGTTCATGCATCAACAGCAGTTCCATCAAGGCGGCCACTTTCCCCCACAG
CCTGAGAGCGCCTACGCCTACGGCAACCAGTTTGCCCAGCAGCCGTATCC
CTTTCAGCATCAGCATCAGCAATACCAACAGCAAGCGCCGCCTTCGTGGG
GAACGTACGACTACGACGACCGTGGCGCGGGCAGCTACGGCGCCCCCGCT
TCAGCTCTTTTAGCGCCATCCCTACCCCCCGAACCCGCCTCGGCACCCCC
TTCGACGACGGAACTGGCGTTGCAGCAAGATTCGCCCCCGGCAGGGGGGG
GTGCTGCTTACCCCAACGGGTTCCCGCACCAGGCAGCTGCTGCTCATGGC
ATTGTCGCCCATCACGGTGGCGGTGGGTTCCCGCACCACGGAGCCCAGTC
GTACGCCCTGCCTCCTGCGGCCGTGGCGCCGCCGAGTACCTACCCGCCGA
GCTCCGAGCCCGAAAGGGCACTCCCGCCGGCTGCTCGCGCGCCCCCCAGC
ACGTACCCACCAAGCTCGGAATCCTCGGATAGCTCGGAGTCGGAAGACGG
CGACCAGGACCTTGCCGTTGCCCGTTACGAGTCACGGAGCCCGGAACGCA
GGGTGGCAACGACCGAGTCACGCGCCCCAGAGAGCAGAGTGGCAACAACC
TCCGGGCGCAGTATTTTCCGCCGCGGCTCTAAGAAGGAGCCTTACCCAAC
GGAAACCCGATACGTACCGCCCCAGCCCGCCCGACTGAACGGCAACTACT
ACCCGAAGGAGACACGGGGACGGGAGGAGGGGCAGCAGCGGCCGCAGCAT
CACGAGAGACCCGGTCTAAGTCGCGGTAGTTCTGGGTTAGTGCTCAAGCT
TCATGTCGGGGCGACACCGCGGGACGGGGCTCCGCCCCCACCGACGTCTG
TGGGACCCCGCCGCAGCAGCAGTACCAATTCTCGGGGCGGCTCTGAGGGC
AGCATGGGCGGACTTTTGCAAGAGGTGGACCGCATGTTTTCCACAGTGAT
GGGGGGAGGCATGTTCGGCGCTGGGGTCAGCCTGGACGTTGCAGGGGAAG
GTTCCGGTAGGGGTCAGAGCCGCGGCTTCAGCGTTGGCAGTGGCAGCAGT
CGAGGGGCTGGAGGTGGAGGTGCACGGGCCTCCATGATGTCGAGCCACAC
AGTGGTAGACGGTAGGTCCAGGACCCTTTTTGCCCGCACGGAACGGACTG
TGGTGAACACCGACGGCACGCGGGAAACCAACATGCAACAGCAGCAGCAG
CAGCAGCAGCAGCCATACCCGTTCCAGCAGGCCCCCTCCCCGTTCATGCA
TCAACAGCAGTTCCATCAAGGCGGCCACTTTCCCCCACAGCCTGAGAGCG
CCTACGCCTACGGCAACCAGTTTGCCCAGCAGCCGTATCCCTTTCAGCAT
CAGCATCAGCAATACCAACAGCAAGCGCCGCCTTCGTGGGGAACGTACGA
CTACGACGACCGTGGCGCGGGCAGCTACGGCGCCCCCGCTTCAGCTCTTT
TAGCGCCATCCCTACCCCCCGAACCCGCCTCGGCACCCCCTTCGACGACG
GAACTGGCGTTGCAGCAAGATTCGCCCCCGGCAGGGGGGGGTGCTGCTTA
CCCCAACGGGTTCCCGCACCAGGCAGCTGCTGCTCATGGCATTGTCGCCC
ATCACGGTGGCGGTGGGTTCCCGCACCACGGAGCCCAGTCGTACGCCCTG
CCTCCTGCGGCCGTGGCGCCGCCGAGTACCTACCCGCCGAGCTCCGAGCC
CGAAAGGGCACTCCCGCCGGCTGCTCGCGCGCCCCCCAGCACGTACCCAC
CAAGCTCGGAATCCTCGGATAGCTCGGAGTCGGAAGACGGCGACCAGGAC
CTTGCCGTTGCCCGTTACGAGTCACGGAGCCCGGAACGCAGGGTGGCAAC
GACCGAGTCACGCGCCCCAGAGAGCAGAGTGGCAACAACCTCCGGGCGCA
GTATTTTCCGCCGCGGCTCTAAGAAGGAGCCTTACCCAACGGAAACCCGA
TACGTACCGCCCCAGCCCGCCCGACTGAACGGCAACTACTACCCGAAGGA
GACACGGGGACGGGAGGAGGGGCAGCAGCGGCCGCAGCATCACGAGAGAC
CCGGTCTAAGTCGCGGTAGTTCTGGGTTAGTGCTCAAGCTTCATGTCGGG
GCGACACCGCGGGACGGGGCTCCGCCCCCACCGACGTCTGTGGGACCCCG
CCGCAGCAGCAGTACCAATTCTCGGGGCGGCTCTGAGGGCAGCATGGGCG
GACTTTTGCAAGAGGTGGACCGCATGTTTTCCACAGTGATGGGGGGAGGC
ATGTTCGGCGCTGGGGTCAGCCTGGACGTTGCAGGGGAAGGTTCCGGTAG
GGGTCAGAGCCGCGGCTTCAGCGTTGGCAGTGGCAGCAGTCGAGGGGCTG
GAGGTGGAGGTGCACGGGCCTCCATGATGTCGAGCCACACAGTGGTAGAC
GGTAGGTCCAGGACCCTTTTTGCCCGCACGGAACGGACTGTGGTGAACAC
CGACGGCACGCGGGAAACCAACGTCCAAGAATACGTGAACAACCAGGCCG
GGGGGGGGTCGCGTAGAGGGAGGGGGACGAGCGCTAGCGGCAGCCGTAGA
TCGTCGGGAAGTGAACGAGCTCCGTCAGCGGCAGGTCCAAGAATACGTGA
ACAACCAGGCCGGGGGGGGGTCGCGTAGAGGGAGGGGGACGAGCGCTAGC
GGCAGCCGTAGATCGTCGGGAAGTGAACGAGCTCCGTCAGCGGCAGGTGC
AAGCGAAAGCGGCAAGAGCGCCACCTCCAGCAAGAGGCACAGCTTAAAGA
GCTTTTTTGGGAGATGAGTGCAAGCGAAAGCGGCAAGAGCGCCACCTCCA
GCAAGAGGCACAGCTTAAAGAGCTTTTTTGGGAGATGA
back to top