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Homology
BLAST of mRNA_E-fasciculatus_F_contig137.2737.1 vs. uniprot
Match: A0A6H5KAK1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAK1_9PHAE) HSP 1 Score: 540 bits (1390), Expect = 2.090e-184 Identity = 316/440 (71.82%), Postives = 344/440 (78.18%), Query Frame = 3
Query: 375 RGSWTWENERELHHPFNSRTHGLWGAGDVV---VGVVMGCGCSTHKSRVAAAKKEEDQGISAQAVGAFTPTSAKTNSDANKPTPELSPPKQQREFLKGMSPPSSSGGDISLGPSPVTPEPAHAVASTGTPPPTVWHEKGSGIAPESGGAITLVGLEPSKGGRQSGEAETGAINDEKEKEDGRTSRKRSIKLVSQPGELQVRLPRLSNQDPLPQIVPGTRGSADPLGILSRGNTLGPGLDTAFREDPTDVVVPTAAGPAAAGPDSGVRARGSSNKRTEDGPTPVKDTPGTHRGNNRIEEELVMTSVTPEDTIDEDILDAQRPVKDRWPRDNQAQKSPETTRSSRGYNDNDKDGPPPRLEARPALAAGAPGGVNTATFSSNHGARGGLNVVDFPDDDPYNNLGAGGGLHSSDARETWGATSGALTLLDADEEDFMETLLMES 1685
R SWT RE F T G G+GD+ VGVVMGCGCSTHK RVAAAKKE DQG S Q VG FTPT+ K + ANKPTP SPPKQQREFLKGMSP SS GGD LGPSPVTPE A+ +A+TGTPPPTV HEKGS APES A+TLVG+ S + GEAETGAI DE EKE+GR SRKRSIKLVSQPGE QVRLPRLSNQD LPQIVP TRGSAD LGILSRGNTLGPGLDTAFREDPT +VVPT A A A DSG A SS+KR+ED PT V + P THR +N I EE VMT VTPEDT+D+ +L+ QRPVKDRWP +N+A++SPETTR RG+ DGPPPRLEARPALAAGAPG VNTAT SSNHG R L+VVDFP DDP N+L AGGGLHSSDA ETWGATSGAL+LLDADEEDFMETLLMES
Sbjct: 9 RSSWT----RETSANFTHSTLGRTGSGDLWGHRVGVVMGCGCSTHKRRVAAAKKE-DQGTSVQTVGTFTPTTPKASPHANKPTPAPSPPKQQREFLKGMSPSSSFGGDT-LGPSPVTPESANVLAATGTPPPTVSHEKGSDTAPESDVAVTLVGVASSNSDHRLGEAETGAIKDETEKEEGRMSRKRSIKLVSQPGEPQVRLPRLSNQDSLPQIVPTTRGSADLLGILSRGNTLGPGLDTAFREDPTYIVVPTEAATAVAAHDSG--AISSSDKRSEDRPTGVIEIPATHRNDNTINEEFVMTPVTPEDTLDKGVLEEQRPVKDRWPWNNRARESPETTR--RGHXXXXXDGPPPRLEARPALAAGAPGEVNTATDSSNHGGRRSLSVVDFPGDDPCNDLSAGGGLHSSDAGETWGATSGALSLLDADEEDFMETLLMES 438
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Model size | 2100 |
| Cds size | 1212 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig137.2737.1 >prot_E-fasciculatus_F_contig137.2737.1 ID=prot_E-fasciculatus_F_contig137.2737.1|Name=mRNA_E-fasciculatus_F_contig137.2737.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=404bp
MGCGCSTHKSRVAAAKKEEDQGISAQAVGAFTPTSAKTNSDANKPTPELS
PPKQQREFLKGMSPPSSSGGDISLGPSPVTPEPAHAVASTGTPPPTVWHE
KGSGIAPESGGAITLVGLEPSKGGRQSGEAETGAINDEKEKEDGRTSRKR
SIKLVSQPGELQVRLPRLSNQDPLPQIVPGTRGSADPLGILSRGNTLGPG
LDTAFREDPTDVVVPTAAGPAAAGPDSGVRARGSSNKRTEDGPTPVKDTP
GTHRGNNRIEEELVMTSVTPEDTIDEDILDAQRPVKDRWPRDNQAQKSPE
TTRSSRGYNDNDKDGPPPRLEARPALAAGAPGGVNTATFSSNHGARGGLN
VVDFPDDDPYNNLGAGGGLHSSDARETWGATSGALTLLDADEEDFMETLL
MES* back to topmRNA from alignment at E-fasciculatus_F_contig137:18094..22883+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig137.2737.1 ID=mRNA_E-fasciculatus_F_contig137.2737.1|Name=mRNA_E-fasciculatus_F_contig137.2737.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4790bp|location=Sequence derived from alignment at E-fasciculatus_F_contig137:18094..22883+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGGGATGTTTACAGCACGCCGATCGCGTTGATGTGCATGTCTTTGTTGTA
GCGTGTGCGTGCGATTCCCACTAGTATTGACTGGCTGCTAATGGGCTGGT
CGTTGAAGAGACGCCAGTCTTACCTTGACCGAAATCCCAGCATATAAGAA
GGCGCCGCCTAGTCTATTTGTTCCTGATTGTCGTCGGTGTTTTTTTCGTC
GCTCGACAAAGAGCGTTCGTTGAACGTGCTTGTCTTAGAGGGCAACAGCG
TCTAGCTGACTGAAGGCAATGCTATCTATGTGTTGTACATAGCCACCGGG
AGCGCGGTTTCATCTGTTGAGGCACGGGGCTGAATCACGAGGCTATCGTG
TATGCAATTGATTGGGCCGGAAGGAGAGGCAGTTGGACTTGGGAAAACGA
GCGCGAACTTCATCACCCATTCAACTCTCGGACGCACGGGCTCTGGGGGG
CTGGGGACGTCGTGGTGGGTGTTGTGATGGGGTGTGGGTGCTCGACGCAC
AAAAGCCGTGTCGCCGCTGCCAAAAAGGTGTGGACATACGGTAGTGTCAA
AACAATGTGGATAGAGTAGAGGTGCCAATCCAAAGCGTGTGTCGTAATCC
TCACTGCTGTATCGTTGCTGGTGTGCCCCATGTCTACTGCTGTAGATCAT
ACTATCGCGTGTCAGCAGTAGTGTCTTGCGGACATATAGGTATGAATATG
ATGTCAAAAGAGGAGATTATTGCAAAAGTCTACTGTACGATGTATAGTCT
ACGAGAACCTGACGTACACACTGCCGGAACCCTTACTTACTTCCACTTGT
ACGTAGCGGGGACCTACTGTAGGCGGTGCTACGATATGGAGCTGATCGGC
AAAACACACAAGCAACGTACAATCGGAGGCAGTTGTTTCGGCAGAAAACG
TCGCCGAGCTTTTCGTCTACGGTCGTTGCATTCGGAGGCTACAAGAATCA
TCTTATTTGCAACAACTTCTGACCGTCAGCAGTAAATGGCCCCTGTGAAC
CTACGCCTTCGTCTGATACACAGGGTAACTTAGTCTATTCGGGCTAGATC
TGACTTCGAAGAAGTTCTCCGTGATCCTTGATGCCCATTAAGCCCTCCTG
AACTCTCATGGGCACAACTGGTAGTTTACCTAACTCGCACAGCTGTGGTT
CCGAGAAACTTTATGGCACACCTTACAGACTGTCGCCTGCGTTTGAAATT
ATGATGTTTACGTTGCGAGGAGGAGGACCAAGGAATCAGTGCGCAAGCGG
TCGGGGCGTTCACCCCAACAAGTGCAAAGACAAACTCTGACGCAAATAAG
CCCACTCCAGAGCTATCGCCACCGAAGCAGCAGCGTGAGTTCTTGAAGGG
AATGTCACCGCCTTCGTCTTCTGGGGGTGACATTTCGTTGGGGCCATCCC
CGGTGACTCCGGAACCGGCGCATGCCGTAGCGTCCACTGGTACACCACCA
CCGACTGTATGGCACGAAAAAGGGAGCGGTATTGCACCAGAAAGCGGCGG
CGCTATAACGCTAGTGGGGCTGGAGCCTTCAAAAGGTGGTCGCCAATCGG
GTGAAGCTGAGACAGGCGCGATCAATGACGAGAAGGAGAAAGAAGACGGA
CGGACGTCGAGAAAGAGGTCTATCAAGTTGGTCTCACAGCCTGGAGAGCT
TCAGGTAGAAACGGGGCCGTATCTCGGCGCATGTAACACATGTTGTGGCT
GTCAACAAACTGTTGGCCTGGAATACACGTCTGCACTTTGAAAACCACAC
GAAACAAAGCACCTACATAGATTGATCAGCTCTTCCAATCAGCGGGTGTG
TACCCGAGCCGCGCCCCCCGCTTCTAGAGTAACCCGCTCTACGGTCATTG
CTTAGTTAGGCCGCTTGCTTGGGGAAACACATGTATCCTCCACCCTGAAA
GCGTCGGGTCAAATAGCTAAGCGTGAAAACATCGGCTGCTTGCTCAATAC
ATACGGAATGCAGGTCCGACTTCCAAGACTCTCCAACCAAGACCCATTGC
CGCAAATAGTGCCGGGAACCAGAGGTTCTGCCGATCCTCTTGGCATACTC
AGCAGAGGAAACACGCTCGGGCCGGGTCTCGATACCGCTTTTCGGGAAGA
TCCTACTGATGTTGTGGTCCCTACCGCCGCCGGCCCCGCCGCTGCCGGCC
CCGATAGCGGGGTCAGGGCGAGGGGCAGCAGCAACAAGCGCACCGAGGAT
GGGCCAACACCAGTGAAGGACACCCCAGGGACACACAGGGGTAACAACAG
GATCGAGGAGGTGAGAACCGAGCACTCTACCTCTTGCCTCGGGTTTGTTC
CAGGCAGCGGTCAAAAAGGATGCTGGTATTTAGTGCTTTGTGTTGCCCGT
TTTTGCCAGATAAGCGCACCGGAAGCTCAATCCGCCAGCACTGCCACGGG
ATCAGTCTCTACTTGCTCGCTTCAACCTTGACAGAGTAGAGCAGCGAATG
TCGCACACGCCCATGTGGCTTTCGACAGCGCGACCACCCTTCCAAGGAAC
GAAATACAACCGAAGTAAAGCACACCCGGCACCCTCCTCTTCTTGCTCTT
CTTGTTTGTGGGGCCTGGACGCATAGCCTGTCGACAACGGGTTAAGTTCT
TGCGGAACGACGAGCATTCTTGGTCCATCACCATTTCTCGAAAAATTCGC
TATCCGAACGGCGGTAGAACCAACTCCGCACATGCATGGAACAGTTTACT
GCCGGGTGAAACTTCGAGATATGTTCACGACCGGTCTCATTCGAGCAAGT
TGGATCGGTTGCTACTCCAAATGGCGGACCTCTGACTGTGACCTTGGGCT
CTTTTTTCGGGACAACGTGATGATCTTTGGCAGGAGTTAGTAATGACCTC
GGTGACGCCGGAAGACACAATCGACGAAGACATCCTCGATGCGCAAAGGC
CTGTGAAGGATAGATGGCCACGGGACAATCAGGCTCAGAAATCTCCTGAA
ACGACTAGAAGGTGCGTTTGTGTGCGATACGCGCACACCCGCGCACCCTC
ATGAGGAAAAACGTTGCGTGCCATACATGCAGCATGGTCCAACAACCAGA
AATTATAAGCTTGTTTGTAGTAATTGTTTTACACGAGGAAGAAATCGTGT
CCCATGCCCGAGTTGTCGATATGTACGGAAGCGTAGGGACTCAGGGCGCC
AGAGCCGATACGAATGTATGCTAAATTTCTTGACGATATTTTTCCAACGT
GTCACTATTCGGCGCTGGGCGCTTACGCGTGATGGAGGCGTGGAACGAGA
AACAAACGCGGTCGCACTTTGTTGGGTGAAAAGAAGCACAACTACCGCAT
TGCGACCAAGGCACGCATTGAAAAATTGAGTGGGTGAAAAATTGTTGGGC
TTGCTTGTAGCAGCAGACGTGCAACAACTTCTCCAGATATCTGTGAGTCA
GTGTGATGCCAACGTGTTGTGTGCCTTACCCTGACTGAAGACGTAATCCA
CAAGACGTGGCATGCTGTAGGATGGGGTATGGGTGCCTGCCAACGTACAC
GGACGTACGGCGTCAGCCTAATGAGACTGGCGGCTGATGCTCTGCAGGTA
TCAGGTCATCACAGTCAAATAAATAAAGTAAACATCGAGTGTACTTTTTC
GCGCGGATCGTTATCTCTTTCCAGCAGCAGGGGGTACAACGACAACGACA
AGGATGGACCTCCTCCTAGGCTGGAAGCAAGACCAGCCCTCGCAGCAGGG
GCTCCTGGTGGGGTGAATACAGCGACATTTAGCTCCAACCACGGCGCGAG
AGGCGGTCTTAACGTAGTCGATTTTCCCGATGACGACCCTTACAATAATC
TTGGTGCCGGAGGTGGACTGCATTCTTCGGATGCTCGCGAGACTTGGGGA
GCGACCAGGTGAGAGAAGCCGGCGCGCGACATCTTTGCTAGTATTGCCGC
ACCCGGGCGTCCCCTTCGCTCTAGGGCGATTCTTGGCAGCTCTTCAACAT
CTATGAACAATGAAGCTAACGTAACACCTTGATACAAAAATGTTTGAGAC
AAGCTACGGGCGTTTGACGACATTCCCTTTCTAAGTAAAATGAAAAGTTT
TTTTTAACAGTCCTTGAATTTGCTTAGTCCATTGCGTTTGAGAAGCAACC
ACAGTCCACTCTCAACGTTTCCGTGAATTGCTACACAAGCCTGCTGCTGT
GGGCGTCCCGTAACGTTTGCAACGTATACATCCTTGGTTTTTCACCGCCG
TTCGGAATGAAACAAACCTTTACTTCCGCGTATGGCTACCAGCAGGTAAA
CAATGCCCCTTTGCCCTCCTGACTGGTTGCGTACGTTGCTCTCTCCTGTT
TCTTTCGGCAGCGGAGCTTTGACACTGCTGGATGCGGACGAAGAGGATTT
CATGGAGACCTTGTTGATGGAAAGTTGAAGGGGAACGGAGGAGGGCGTCG
TTACGTCATTAATTGTTCTTTAATGTTGCGGCTGTCTTGATACTATATTC
CTCCTGTGGCTTGGCCTCCATTCTGTACCGGTGACCTACATGAAGCTCTC
GTCTGATTGCGGCCTGAAGCCTGGTGGTCCATCTGCCTTGGTGTAGTCAG
ACTCCACAGAATGCAGAACCAGATAAAAAACTCTTGTTTTGCACAACCTT
GTTCCTTGCTTGATCAGTGGGGAAAGCAAAAGGGTGCGTAGCACTTTGTA
TGGGTAGGGTTCAAGCTTCTTTCACCTCGTGAAAATCGAACCCTCAATAT
CTTAGCTTCCAAATTCTTAAGTGGTGGCACAGGTTCTGTGGTCGTTTTAC
TCTTCAATTGCCCGAGGCCCACCAGGCCACCCGGGGCCAG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig137:18094..22883+ >mRNA_E-fasciculatus_F_contig137.2737.1 ID=mRNA_E-fasciculatus_F_contig137.2737.1|Name=mRNA_E-fasciculatus_F_contig137.2737.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2424bp|location=Sequence derived from alignment at E-fasciculatus_F_contig137:18094..22883+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGGTGTGGGTGCTCGACGCACAAAAGCCGTGTCGCCGCTGCCAAAAA
GATGGGGTGTGGGTGCTCGACGCACAAAAGCCGTGTCGCCGCTGCCAAAA
AGGAGGAGGACCAAGGAATCAGTGCGCAAGCGGTCGGGGCGTTCACCCCA
ACAAGTGCAAAGACAAACTCTGACGCAAATAAGCCCACTCCAGAGCTATC
GCCACCGAAGCAGCAGCGTGAGTTCTTGAAGGGAATGTCACCGCCTTCGT
CTTCTGGGGGTGACATTTCGTTGGGGCCATCCCCGGTGACTCCGGAACCG
GCGCATGCCGTAGCGTCCACTGGTACACCACCACCGACTGTATGGCACGA
AAAAGGGAGCGGTATTGCACCAGAAAGCGGCGGCGCTATAACGCTAGTGG
GGCTGGAGCCTTCAAAAGGTGGTCGCCAATCGGGTGAAGCTGAGACAGGC
GCGATCAATGACGAGAAGGAGAAAGAAGACGGACGGACGTCGAGAAAGAG
GTCTATCAAGTTGGTCTCACAGCCTGGAGAGCTTCAGGAGGAGGACCAAG
GAATCAGTGCGCAAGCGGTCGGGGCGTTCACCCCAACAAGTGCAAAGACA
AACTCTGACGCAAATAAGCCCACTCCAGAGCTATCGCCACCGAAGCAGCA
GCGTGAGTTCTTGAAGGGAATGTCACCGCCTTCGTCTTCTGGGGGTGACA
TTTCGTTGGGGCCATCCCCGGTGACTCCGGAACCGGCGCATGCCGTAGCG
TCCACTGGTACACCACCACCGACTGTATGGCACGAAAAAGGGAGCGGTAT
TGCACCAGAAAGCGGCGGCGCTATAACGCTAGTGGGGCTGGAGCCTTCAA
AAGGTGGTCGCCAATCGGGTGAAGCTGAGACAGGCGCGATCAATGACGAG
AAGGAGAAAGAAGACGGACGGACGTCGAGAAAGAGGTCTATCAAGTTGGT
CTCACAGCCTGGAGAGCTTCAGGTCCGACTTCCAAGACTCTCCAACCAAG
ACCCATTGCCGCAAATAGTGCCGGGAACCAGAGGTTCTGCCGATCCTCTT
GGCATACTCAGCAGAGGAAACACGCTCGGGCCGGGTCTCGATACCGCTTT
TCGGGAAGATCCTACTGATGTTGTGGTCCCTACCGCCGCCGGCCCCGCCG
CTGCCGGCCCCGATAGCGGGGTCAGGGCGAGGGGCAGCAGCAACAAGCGC
ACCGAGGATGGGCCAACACCAGTGAAGGACACCCCAGGGACACACAGGGG
TAACAACAGGATCGAGGAGGTCCGACTTCCAAGACTCTCCAACCAAGACC
CATTGCCGCAAATAGTGCCGGGAACCAGAGGTTCTGCCGATCCTCTTGGC
ATACTCAGCAGAGGAAACACGCTCGGGCCGGGTCTCGATACCGCTTTTCG
GGAAGATCCTACTGATGTTGTGGTCCCTACCGCCGCCGGCCCCGCCGCTG
CCGGCCCCGATAGCGGGGTCAGGGCGAGGGGCAGCAGCAACAAGCGCACC
GAGGATGGGCCAACACCAGTGAAGGACACCCCAGGGACACACAGGGGTAA
CAACAGGATCGAGGAGGAGTTAGTAATGACCTCGGTGACGCCGGAAGACA
CAATCGACGAAGACATCCTCGATGCGCAAAGGCCTGTGAAGGATAGATGG
CCACGGGACAATCAGGCTCAGAAATCTCCTGAAACGACTAGAAGGAGTTA
GTAATGACCTCGGTGACGCCGGAAGACACAATCGACGAAGACATCCTCGA
TGCGCAAAGGCCTGTGAAGGATAGATGGCCACGGGACAATCAGGCTCAGA
AATCTCCTGAAACGACTAGAAGCAGCAGGGGGTACAACGACAACGACAAG
GATGGACCTCCTCCTAGGCTGGAAGCAAGACCAGCCCTCGCAGCAGGGGC
TCCTGGTGGGGTGAATACAGCGACATTTAGCTCCAACCACGGCGCGAGAG
GCGGTCTTAACGTAGTCGATTTTCCCGATGACGACCCTTACAATAATCTT
GGTGCCGGAGGTGGACTGCATTCTTCGGATGCTCGCGAGACTTGGGGAGC
GACCAGCAGCAGGGGGTACAACGACAACGACAAGGATGGACCTCCTCCTA
GGCTGGAAGCAAGACCAGCCCTCGCAGCAGGGGCTCCTGGTGGGGTGAAT
ACAGCGACATTTAGCTCCAACCACGGCGCGAGAGGCGGTCTTAACGTAGT
CGATTTTCCCGATGACGACCCTTACAATAATCTTGGTGCCGGAGGTGGAC
TGCATTCTTCGGATGCTCGCGAGACTTGGGGAGCGACCAGCGGAGCTTTG
ACACTGCTGGATGCGGACGAAGAGGATTTCATGGAGACCTTGTTGATGGA
AAGTTGACGGAGCTTTGACACTGCTGGATGCGGACGAAGAGGATTTCATG
GAGACCTTGTTGATGGAAAGTTGA back to top
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