mRNA_E-fasciculatus_F_contig137.2736.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig137.2736.1 vs. uniprot
Match: D7FMH2_ECTSI (RibD_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMH2_ECTSI) HSP 1 Score: 630 bits (1626), Expect = 4.320e-223 Identity = 346/414 (83.57%), Postives = 364/414 (87.92%), Query Frame = 2
Query: 41 MRLDIWTALVVFSVLPQGTLSEFAVAARCQERSLEAGVFPVWPSGPSSSSYRGSSNGDVAAIAMDRNIAEPRVTMASEPGPTRINREASQSKHLAPAAAXXXXXXXXXXXXXXXXXXXXXXTATGTPVGEGATRFERGGAAVMASRGRGRGMPSVTLKLAMDRNGAVDDMAEGPKRFTSQASLDAVHRIRRDCEAVLVGVGTVVRDDPSLTVRRVPLHEGQTRQPMRVVLDRTLRLTGAQAGQNPRAILRDGHSSVVFYSAGCEDTEARAAELKADVKRSRAAVSDSSGKTEPDTSHQNASPVDFVGLPVQRPGAGVDLSGVLKALFERGIDHVLVEGGPSVARGFLSERLVDRAIIVRAPMEFSRPVPSDIETETLRSAGLELVGCTKWGDDEAECWTRPGLAWPGGGVGSWP 1282
MRLD+WTA V FSVLPQ TLSEFAVA R ++ SL+AGVF V PS PSSSSYRG+SNGDVAA AMDRNIA+ E GP RI+ E +QSKH+APAAA XXXXXX XXXXXXX G P+ EGATRFERGGAAV SRGRGRGMPSVTLKLAMDRNGAVDDM+EGPKRFTS ASLDAVHRIRRDCEAVLVGVGTVVRDDPSLTVRRVPL+ GQTRQP RVVLDRTLRLTGAQAGQNPRAILRDGHSS+VFYSAGCEDTEARAAELKADVKRSR AVSDS G+TEPDTSHQ +PVDFVG+PVQRPGAGVDLSGVL AL ERGIDHVLVEGGPSVARGFLSERLVDRAII+RAPMEF RPVPSDI T+TLR AGLELVGCTKWGDDEAECWTRPGL WPGGGVGSWP
Sbjct: 1 MRLDVWTAAVAFSVLPQETLSEFAVAGR-RQGSLDAGVFRVRPSCPSSSSYRGNSNGDVAATAMDRNIAKHH-----EAGPPRISSETTQSKHVAPAAAAAXXXXXXGRAGEAEXXXXXXXXXXGAPMAEGATRFERGGAAVTESRGRGRGMPSVTLKLAMDRNGAVDDMSEGPKRFTSPASLDAVHRIRRDCEAVLVGVGTVVRDDPSLTVRRVPLNGGQTRQPTRVVLDRTLRLTGAQAGQNPRAILRDGHSSLVFYSAGCEDTEARAAELKADVKRSRTAVSDSPGETEPDTSHQKLAPVDFVGMPVQRPGAGVDLSGVLGALLERGIDHVLVEGGPSVARGFLSERLVDRAIIIRAPMEFVRPVPSDIATDTLRRAGLELVGCTKWGDDEAECWTRPGLGWPGGGVGSWP 408
BLAST of mRNA_E-fasciculatus_F_contig137.2736.1 vs. uniprot
Match: A0A836CBN8_9STRA (Riboflavin biosynthesis protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBN8_9STRA) HSP 1 Score: 258 bits (660), Expect = 1.660e-79 Identity = 145/272 (53.31%), Postives = 181/272 (66.54%), Query Frame = 2
Query: 470 ASRGRGRGMPSVTLKLAMDRNGAVDDMAEGPKRFTSQASLDAVHRIRRDCEAVLVGVGTVVRDDPSLTVRRVPLHEGQTRQPMRVVLDRTLRLTGAQAGQNPRAILRDGH-SSVVFYSAGCEDTEARAAELKADVKRSRAAVSDSSGKTEPDTSHQNASPVDFVGLPVQRPGAGVDLSGVLKALFERGIDHVLVEGGPSVARGFLSERLVDRAIIVRAPMEFSRPVPSDIETETLRSAGLELVGCTKWGDDEAECWTRPGLAWPGGGVGSWP 1282
A+ G P VTLKLA+D+ GAVDD +E PKRFTS SLDAVHR+RRD AV+VGV TVVRD+PSLTVRRVPL +GQ +QP+RVVLDR LR+ A Q +L DGH ++V+F + +ARAAEL V PV +P P G L V++ L +RGI H++VEGGP +AR FLS++LVDRAIIV+AP++F +PVPS I+ LRSAGLEL+G T+WG DE ECW++PGL WP GGVG+WP
Sbjct: 3 ANGGAASSRPLVTLKLAVDQQGAVDDRSEAPKRFTSSESLDAVHRLRRDAGAVVVGVETVVRDNPSLTVRRVPLLDGQ-QQPLRVVLDRNLRIPEADQCQ----LLSDGHPTAVLFTNTPGTFVKARAAELMLSVL---------------------GLPVMIDDIPTDTPEDGCPLLTVVRFLGQRGISHIMVEGGPCIARQFLSDQLVDRAIIVKAPVKFQQPVPSGIDHSVLRSAGLELLGTTQWGPDEVECWSKPGLEWPNGGVGNWP 248
BLAST of mRNA_E-fasciculatus_F_contig137.2736.1 vs. uniprot
Match: I2CPJ6_NANGC (Riboflavin biosynthesis protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CPJ6_NANGC) HSP 1 Score: 192 bits (488), Expect = 6.210e-54 Identity = 121/271 (44.65%), Postives = 157/271 (57.93%), Query Frame = 2
Query: 476 RGRGRGMPSVTLKLAMDRNGAVDDMAEGPKRFTSQASLDAVHRIRRDCEAVLVGVGTVVRDDPSLTVRRVPLHEGQTRQPMRVVLDRTLRLTGAQAGQNPRAILRDGHSSVVFYSAGCEDTEARAAELKADVKRSRAAVSDSSGKTEPDTSHQNASPVDFVGLPVQRPGAGVDLSGVLKALFERGI-DHVLVEGGPSVARGFLSERLVDRAIIVRAPMEFSR-PVPSDIETETLRSAGLELVGCTKWGDDEAECWTRPGLAWPGGGVGSWP 1282
RG+G P VT+KLA+DR GAVDD P RFT +ASLDAVHR+RR+ EAV+VGV TVVRDDPSLTVRRVPL Q RQP+RVVLDR+LR+ + +L D H ++V+Y G RAA++ + + A V +D + P RP L VL L++ G+ +H++VEGGP A+ FL VDRA+I A MEF P+PS ++ L+ AGL +G G D CW+RP L WP + WP
Sbjct: 15 RGKGE-RPRVTVKLAVDRKGAVDDATLKPGRFTCEASLDAVHRLRRESEAVVVGVETVVRDDPSLTVRRVPLRPDQ-RQPIRVVLDRSLRIPYSST------LLNDRHRTLVYYVQG-PWRHMRAADIM--LSKFVAPVL-----------------IDCINEPELRPEDPAPLLEVLGRLYDMGVREHIMVEGGPRTAKAFLDAACVDRAVIFEAAMEFKGDPIPSGVDENVLKKAGLMYLGSYPSGVDMVHCWSRPDLPWPAQELSDWP 257
BLAST of mRNA_E-fasciculatus_F_contig137.2736.1 vs. uniprot
Match: A0A6U6BWZ9_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A6U6BWZ9_GUITH) HSP 1 Score: 189 bits (480), Expect = 4.480e-52 Identity = 108/265 (40.75%), Postives = 165/265 (62.26%), Query Frame = 2
Query: 494 MPSVTLKLAMDRNGAVDDMAEGPKRFTSQASLDAVHRIRRDCEAVLVGVGTVVRDDPSLTVRRVPLHEGQTRQPMRVVLDRTLRLTGAQAGQNPRAILRDGHSSVVFYSAGCEDTEARAAELKADVKRSRAAVSDSSGKTEPDTSHQNASPVDFVGLPVQRPGAGVDLSGVLKALFERGIDHVLVEGGPSVARGFLSERLVDRAIIVRAPMEFSR-PVPSDIETETLRSAGLELVGCTK-WGDDEAECWTRPGLAWPGGGVGSWP 1282
+P VTLK+A+D NGAVDD+ KRFTS+ SLDAVHR+RR +AVLVG+GTVVRDDPSLTVRRVPL EG+ QP+R V+D +L++ + ++RDG+ +V+F+S ++ + R +L ++++ + V F+ P + + +DL+ +L L G+ +++EGGP+ + FL ++LVDRAI++ AP++F + PVPS I+ L++AGL L+G + WG D W++ L WP + WP
Sbjct: 77 LPIVTLKIALDENGAVDDLGITSKRFTSEQSLDAVHRLRRCSDAVLVGIGTVVRDDPSLTVRRVPLLEGRE-QPLRAVIDPSLKI------EAHCKVMRDGYKTVIFHSDS-DEVDKRRIQLISELEATNQ--------------------VSFIPTPTNQHRS-LDLTSILGELSNLGVKELMLEGGPATVKRFLQQKLVDRAIVIVAPIKFDQLPVPSLIDHHVLKAAGLALLGEHQDWGKDSVSLWSKAQLQWPSPVISEWP 312
BLAST of mRNA_E-fasciculatus_F_contig137.2736.1 vs. uniprot
Match: A0A832V5V4_9ARCH (Bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD n=2 Tax=Archaea TaxID=2157 RepID=A0A832V5V4_9ARCH) HSP 1 Score: 185 bits (469), Expect = 1.020e-49 Identity = 110/263 (41.83%), Postives = 150/263 (57.03%), Query Frame = 2
Query: 494 MPSVTLKLAMDRNGAVDDMAEGPKRFTSQASLDAVHRIRRDCEAVLVGVGTVVRDDPSLTVRRVPLHEGQTRQPMRVVLDRTLRLTGAQAGQNPRAILRDGHSSVVFYSAGCEDTEARAAELKADVKRSRAAVSDSSGKTEPDTSHQNASPVDFVGLPVQRPGAGVDLSGVLKALFERGIDHVLVEGGPSVARGFLSERLVDRAIIVRAPMEFSRPVPSDIETETLRSAGLELVGCTKWGDDEAECWTRPGLAWPGGGVGSWP 1282
+P VTLK+A+D+NGAVDD AE RFTSQ SLDAVHR+R+D +A++VGVGTV+RD+PSLTVRR+ L EG+ QP+RVVLDR L+ I+ D H +++F+ G E+ A S N V+ L R +GVDL +L L +RG VL+EGGP AR FL+ VDR ++++A ++FS+P P + E +AGL+ + WG D W++ GL WP V WP
Sbjct: 155 IPLVTLKVAIDKNGAVDDRAEDSFRFTSQESLDAVHRLRKDVDAIIVGVGTVLRDNPSLTVRRIELGEGK--QPLRVVLDRELKTP------IDSIIVNDDHDTLIFHVEGREEKIAAL------------------------NSRNN---VEVHKLQSARNHSGVDLHLLLSLLGDRGYQEVLLEGGPETARRFLAAETVDRVVLIKADVDFSQPFPLSLGDEDFSAAGLQRLSDVHWGVDTVSRWSKAGLGWP---VDGWP 379
BLAST of mRNA_E-fasciculatus_F_contig137.2736.1 vs. uniprot
Match: A0A7S4EBC2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EBC2_9STRA) HSP 1 Score: 174 bits (440), Expect = 9.840e-47 Identity = 115/247 (46.56%), Postives = 134/247 (54.25%), Query Frame = 2
Query: 503 VTLKLAMDRNGAVDDMAEGPKRFTSQASLDAVHRIRRDCEAVLVGVGTVVRDDPSLTVRRVPLHEGQTRQPMRVVLDRTLRLTGAQAGQNPRAILRDGHSSVVFYSAGCEDTEARAAELKADVKRSRAAVSDSSGKTEPDTSHQNASPVDFVGLPVQRPGAGVDLSGVLKALFERGIDHVLVEGGPSVARGFLSERLVDRAIIVRAPMEFS-RPVPSDIETETLRSAGLELVGCTKWGDDEAECWTR 1240
VTLKLAMDRNGAVDD+ + +RFTS ASLDAVHR+RR C+AVLVG TV RDDPSLTVRRVPL +T QP+RVVL R A AG +L DG +VVF D AA L GVL+ L RG++H++VEGGP AR FLS LVDRAI+VRAP+ F+ +PVPS I TLRSAGL D+ WTR
Sbjct: 65 VTLKLAMDRNGAVDDLGDKAERFTSPASLDAVHRLRRHCDAVLVGASTVARDDPSLTVRRVPLAP-RTAQPLRVVLGRA----PADAG-----LLTDGLETVVFSKDDGLDGAGAAA-----------------------------------------------LPGVLRELHRRGVNHLMVEGGPQTARYFLSAGLVDRAIVVRAPVAFADKPVPSGITAATLRSAGLSFHSRRDVSGDDTHVWTR 254
BLAST of mRNA_E-fasciculatus_F_contig137.2736.1 vs. uniprot
Match: A0A842P3K4_9EURY (Bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD n=1 Tax=Euryarchaeota archaeon TaxID=2026739 RepID=A0A842P3K4_9EURY) HSP 1 Score: 175 bits (443), Expect = 4.180e-46 Identity = 103/263 (39.16%), Postives = 149/263 (56.65%), Query Frame = 2
Query: 494 MPSVTLKLAMDRNGAVDDMAEGPKRFTSQASLDAVHRIRRDCEAVLVGVGTVVRDDPSLTVRRVPLHEGQTRQPMRVVLDRTLRLTGAQAGQNPRAILRDGHSSVVFYSAGCEDTEARAAELKADVKRSRAAVSDSSGKTEPDTSHQNASPVDFVGLPVQRPGAGVDLSGVLKALFERGIDHVLVEGGPSVARGFLSERLVDRAIIVRAPMEFSRPVPSDIETETLRSAGLELVGCTKWGDDEAECWTRPGLAWPGGGVGSWP 1282
+P VTLK+A+D NGAVDD AE RFTS+ SL+AVHR+R+D +A++VG+GT++RD+PSLTVRR+ + G +QP+RV+LDR L+ I+ DGH++++ + E R E+ A R V+ L R +GVDL +L L +RG VL+EGGP AR F++ LVDR II++ +FS+ P + + R+AGL +G ++WG D + W+R L WP WP
Sbjct: 143 IPLVTLKIAVDSNGAVDDRAEDSFRFTSEESLNAVHRLRKDVDAIIVGIGTIIRDNPSLTVRRIEM--GLGKQPLRVILDRELKTP------LDSTIVNDGHNTLILH------VEGREGEIAALDSRET---------------------VEVQKLQSARSHSGVDLHLLLSLLGDRGFQEVLLEGGPETARRFIAAGLVDRLIIIQTKAQFSQGFPLSLGDDDFRNAGLVRLGDSEWGGDSVQRWSREDLNWP---AEDWP 367
BLAST of mRNA_E-fasciculatus_F_contig137.2736.1 vs. uniprot
Match: K0RZ71_THAOC (RibD_C domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RZ71_THAOC) HSP 1 Score: 174 bits (441), Expect = 5.330e-46 Identity = 113/265 (42.64%), Postives = 149/265 (56.23%), Query Frame = 2
Query: 503 VTLKLAMDRN---GAVDDMAEGPKRFTSQASLDAVHRIRRDCEAVLVGVGTVVRDDPSLTVRRVPLHEGQTRQPMRVVLDRTLRLTGAQAGQNPRAILRDGHSSVVFYSAGCEDTEARAAELKADVKRSRAAVSDSSGKTEPDTSHQNASP-VDFVGLPVQRPGAG-VDLSGVLKALFERGIDHVLVEGGPSVARGFLSERLVDRAIIVRAPMEFSRPVPSDIETETLRSAGLELVGCTKWGDDEAECWTRPGLAWPGGGVGSWP 1282
VTLK+A D + G D +RFTS SLD VHR+RR+ AVLVG GTV +DD SLTVRRV L+EGQ+ QP+RVVLD TL + G + +L+DG S+++++S+ E E D H SP VD V + G+ + VL+ L RG+ H++VEGGP+ AR FL +VDRAI+VRAP++F PVP+++ ETL AGLE++G G D E W R G WP G WP
Sbjct: 122 VTLKMAFDSSPEWGVADLSETKSERFTSPESLDMVHRLRRESSAVLVGRGTVEKDDCSLTVRRVKLNEGQS-QPIRVVLDPTLSILGGRKF----TLLKDGLSTIIYHSS--EHNE--------------------------DGRHLATSPDVDLVEMTTGASGSNCLSPREVLRDLESRGLRHIMVEGGPATARAFLEAGVVDRAILVRAPVQFQIPVPAEMNEETLGRAGLEMIGSGDMGGDTIEYWVRKGSTWP---AGEWP 350
BLAST of mRNA_E-fasciculatus_F_contig137.2736.1 vs. uniprot
Match: A0A6V8EGV0_9ARCH (Bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD n=4 Tax=Archaea TaxID=2157 RepID=A0A6V8EGV0_9ARCH) HSP 1 Score: 172 bits (435), Expect = 5.320e-45 Identity = 103/254 (40.55%), Postives = 137/254 (53.94%), Query Frame = 2
Query: 497 PSVTLKLAMDRNGAVDDMAEGPKRFTSQASLDAVHRIRRDCEAVLVGVGTVVRDDPSLTVRRVPLHEGQTRQPMRVVLDRTLRLTGAQAGQNPRAILRDGHSSVVFYSAGCEDTEARAAELKADVKRSRAAVSDSSGKTEPDTSHQNASPVDFVGLPVQRPGAGVDLSGVLKALFERGIDHVLVEGGPSVARGFLSERLVDRAIIVRAPMEFSRPVPSDIETETLRSAGLELVGCTKWGDDEAECWTRPGLAWP 1258
P VTLK AMD NG VD E P RFTS+ SLDA HR+RR C+A+LVGV T++RD+PSL +RR+PL G++ QP+RVVLDRTLR+ +L DG ++V ++ + G+ + GVDLS +L+ L + GI +LVEGGP V F+ E LVDRAII+++P E S I L GL LV T+WG+D + W+RP L+WP
Sbjct: 156 PLVTLKAAMDFNGVVD--GENPGRFTSEESLDAAHRLRRHCDAILVGVNTIIRDNPSLNIRRIPL--GKSGQPLRVVLDRTLRIP------TEATVLNDGGETIVVHTQQSDR-----------------------------------------GVILPSGTGGVDLSALLEHLGDIGIQELLVEGGPVVWAQFIEEGLVDRAIIIQSPNELGEGPRSGISDSKLSEVGLSLVEQTQWGEDSVQFWSRPELSWP 358
BLAST of mRNA_E-fasciculatus_F_contig137.2736.1 vs. uniprot
Match: A0A7C7HSY4_9ARCH (Bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD n=4 Tax=Archaea TaxID=2157 RepID=A0A7C7HSY4_9ARCH) HSP 1 Score: 171 bits (434), Expect = 1.030e-44 Identity = 104/262 (39.69%), Postives = 143/262 (54.58%), Query Frame = 2
Query: 497 PSVTLKLAMDRNGAVDDMAEGPKRFTSQASLDAVHRIRRDCEAVLVGVGTVVRDDPSLTVRRVPLHEGQTRQPMRVVLDRTLRLTGAQAGQNPRAILRDGHSSVVFYSAGCEDTEARAAELKADVKRSRAAVSDSSGKTEPDTSHQNASPVDFVGLPVQRPGAGVDLSGVLKALFERGIDHVLVEGGPSVARGFLSERLVDRAIIVRAPMEFSRPVPSDIETETLRSAGLELVGCTKWGDDEAECWTRPGLAWPGGGVGSWP 1282
P VTLK+A DRNGAVDD+A KRFTS SLDAVHR+RRDC+A+++GV T+VRD+PSLTVRR+ L G RQP+R++LDR LR +L D H +++ ++ G + E T+ + V+ V L GVDL+ VL L +R ++VEGG AR FL+ L+DRAII+R EF+ P+ IE++ L L + WG D + W++ L WP +WP
Sbjct: 154 PLVTLKIATDRNGAVDDLALASKRFTSPDSLDAVHRLRRDCDAIIIGVETIVRDNPSLTVRRIELGHG--RQPVRIILDRALRTP------LDSTVLADEHQTMILHTEG---------------------------EYENITALSSRENVEVVCLKSADSHNGVDLNRVLALLGDREFQEIMVEGGAETARRFLAAGLIDRAIIIRTEDEFTTPLTLGIESDHLIDKDLAIYREVDWGGDRVQLWSKEKLEWP---CPNWP 377 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig137.2736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig137.2736.1 >prot_E-fasciculatus_F_contig137.2736.1 ID=prot_E-fasciculatus_F_contig137.2736.1|Name=mRNA_E-fasciculatus_F_contig137.2736.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=415bp MRLDIWTALVVFSVLPQGTLSEFAVAARCQERSLEAGVFPVWPSGPSSSSback to top mRNA from alignment at E-fasciculatus_F_contig137:13268..17951- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig137.2736.1 ID=mRNA_E-fasciculatus_F_contig137.2736.1|Name=mRNA_E-fasciculatus_F_contig137.2736.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4684bp|location=Sequence derived from alignment at E-fasciculatus_F_contig137:13268..17951- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig137:13268..17951- >mRNA_E-fasciculatus_F_contig137.2736.1 ID=mRNA_E-fasciculatus_F_contig137.2736.1|Name=mRNA_E-fasciculatus_F_contig137.2736.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2490bp|location=Sequence derived from alignment at E-fasciculatus_F_contig137:13268..17951- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |