mRNA_E-fasciculatus_F_contig137.2735.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig137.2735.1
Unique NamemRNA_E-fasciculatus_F_contig137.2735.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig137.2735.1 vs. uniprot
Match: D7FMH3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMH3_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 5.350e-45
Identity = 135/142 (95.07%), Postives = 137/142 (96.48%), Query Frame = 1 
Query:  106 GAFEDYDEEEVAALEAYMKTHPSKEEDKEALRKRAKELSASIGSGQGSEAKGGRTAGGNXXXXXXXXXXXXXXXXXXXEETIEYTDASGKLKFNKRPVSTAAGAAXXXXXXXXXXXXXXXXXXXXXXLNNAKLLSFGDDEDG 531
            GAFEDYDEEEVAALEAYMKTHPSKEEDKEALRKRA+ELSASIGSGQGSEAKGGRTAGGNXXXXXXXXXXXXXXXXXXXEE IEYTDASGKLKFNKRPVS AAG  XXXXXXXXXXXXXXXXXXXXXX +NAKLLSFGDDEDG
Sbjct:   37 GAFEDYDEEEVAALEAYMKTHPSKEEDKEALRKRARELSASIGSGQGSEAKGGRTAGGNXXXXXXXXXXXXXXXXXXXEEPIEYTDASGKLKFNKRPVSAAAGGXXXXXXXXXXXXXXXXXXXXXXXXSNAKLLSFGDDEDG 178
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BLAST of mRNA_E-fasciculatus_F_contig137.2735.1 vs. uniprot
Match: A0A6H5KEF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEF2_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 2.460e-15
Identity = 44/46 (95.65%), Postives = 45/46 (97.83%), Query Frame = 1 
Query:  106 GAFEDYDEEEVAALEAYMKTHPSKEEDKEALRKRAKELSASIGSGQ 243
            GAFEDYDEEEVAALEAYMKTHPSKEEDKEALRKRA+ELS SIGSGQ
Sbjct:  101 GAFEDYDEEEVAALEAYMKTHPSKEEDKEALRKRARELSVSIGSGQ 146
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig137.2735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMH3_ECTSI5.350e-4595.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KEF2_9PHAE2.460e-1595.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig137contigE-fasciculatus_F_contig137:10558..13083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-23_000300.1
Exons2
Model size1288
Cds size534
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig137.2735.1prot_E-fasciculatus_F_contig137.2735.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig137 10558..12329 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927863.8752563-CDS-E-fasciculatus_F_contig137:10557..108001622927863.8752563-CDS-E-fasciculatus_F_contig137:10557..10800Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig137 10558..10800 +
1695995728.792866-CDS-E-fasciculatus_F_contig137:10557..108001695995728.792866-CDS-E-fasciculatus_F_contig137:10557..10800Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig137 10558..10800 +
1622927863.8885813-CDS-E-fasciculatus_F_contig137:12038..123291622927863.8885813-CDS-E-fasciculatus_F_contig137:12038..12329Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig137 12039..12329 +
1695995728.8009636-CDS-E-fasciculatus_F_contig137:12038..123291695995728.8009636-CDS-E-fasciculatus_F_contig137:12038..12329Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig137 12039..12329 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927863.8997576-UTR-E-fasciculatus_F_contig137:12329..130831622927863.8997576-UTR-E-fasciculatus_F_contig137:12329..13083Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig137 12330..13083 +
1695995728.809046-UTR-E-fasciculatus_F_contig137:12329..130831695995728.809046-UTR-E-fasciculatus_F_contig137:12329..13083Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig137 12330..13083 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig137.2735.1

>prot_E-fasciculatus_F_contig137.2735.1 ID=prot_E-fasciculatus_F_contig137.2735.1|Name=mRNA_E-fasciculatus_F_contig137.2735.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=178bp
MPGQGRGRDRDSNQGAAEGRGGNGGGGAGGGGGSGGAFEDYDEEEVAALE
AYMKTHPSKEEDKEALRKRAKELSASIGSGQGSEAKGGRTAGGNGGAAGP
GSAGGAPKAPPPPEETIEYTDASGKLKFNKRPVSTAAGAAAGKSGESGKG
SKKKTKRAKLAKLNNAKLLSFGDDEDG*
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mRNA from alignment at E-fasciculatus_F_contig137:10558..13083+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig137.2735.1 ID=mRNA_E-fasciculatus_F_contig137.2735.1|Name=mRNA_E-fasciculatus_F_contig137.2735.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2526bp|location=Sequence derived from alignment at E-fasciculatus_F_contig137:10558..13083+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCCGGGCAAGGCCGTGGCCGAGATAGAGATTCCAACCAAGGCGCAGC
GGAGGGCAGGGGTGGGAACGGAGGGGGAGGGGCAGGCGGCGGGGGCGGGA
GCGGAGGCGCTTTTGAGGATTATGACGAAGAGGAGGTGGCGGCTTTGGAG
GCGTACATGAAGACGCACCCCAGCAAAGAAGAAGACAAAGAGGCCTTGCG
AAAACGCGCAAAAGAACTCTCAGCTAGCATAGGCTCTGGTCAGGTGATGA
AGTGCCCCGGGTGTGTGTACGTGTACCAACAACAGGAGGAGCAGCAATGT
TCGTCCCAAGCGATTGAATTCAGTTCGCCTTGCTAAAGGGGGCGCGTCAG
ATGCACCGAAAAACGTCCTACCAAGGATGTTGCAGTCGCAGTCGCTCGTT
GACTTCTCGAGTAGTACTAAATACTCGAATTCGCATTCAGCGTCAACCGT
TGCTTTGCGGGAAAAATAGTTTACAACGCGTTCTGGAGATGGCATGCAGC
TCTTGTGCACCGAAGTAGACGGCAACCCTATGTAGTCGGCACACACGAAA
TAGTGTGAGGTTCCACTACGAGGCTCACTACAGGGTGGCCACGCCCCTTG
GGGACAATAGTTCAAGGTTGAGGTTTGCTCGGTCAACATATTTCGTGTCG
CCGGCGGCCTCGAACGTCCGTGGAATGGTGGCTGTAACCCGCAGTCCTGT
ATGCAGTATCCCGTCAAGTTCGTGGTTTATAAATCAGTGATCAGTAGCAG
TGGTCAGACGTTGTGAAGCCTCCACGTACTCAACAGATCCCCTCAACCCT
TTGCAATGGCAAGGTTTCTACCTCGTTGTGATTTCTTAGTATATAGTCTA
GTGGTGAGCAATACTTAGTATTATAGTCTAGTGGTGAGCAATATTGAACT
ATCACGCTTATCCCTACACCTCAGCAGCAGGCATGGGGGATAGACGTATG
GGCGTCGATGTACATGCGTATCTGACGTACAGTACTGCAGCAGCAAATGT
ATTGTTGGCCATGTGTGAGAGTGAGAGTGAGATGTGTGCAGACATATGTG
TGTGATGACGAGCAAGGGGTTTGTTGCCGACGCGGTGCATTTTCCCCGCA
GCTCAATGTGACGGCGTTCGCCCTATCATATGTGCCATACTGGCTAATAG
CACCTTAGTGGATAGCGGTACGTAATTGACCGCGAAGGTGCGAGCGAGTT
TGGCCCTCAAACCTCCAACACTATTGGAATACACGGGTTCCTTTCTCGTG
TGTTGTTTGTTGTTGTTTCTCACATTAGCTCTAAAAAAAAAAGAAAGATG
GGGAGCCCGTGGTCTCAAAACAAAATGAAGAAAGAAAGACCAGCTACCGC
ACCAAACGAGAAAGAGCGTCGAGGTGTGTGTCTGCCGGTCATGACTGTTC
GGAACGATAGTGTTGAAAACCTTCCCCCTTCTTGGCTCCCGAACCGACAA
ACGTTCGAATTGCCGCTCCCATTTGACGCAGGGTTCAGAAGCAAAGGGCG
GCAGAACAGCGGGGGGAAACGGGGGCGCGGCAGGACCAGGGTCGGCAGGA
GGTGCACCCAAAGCACCGCCTCCCCCAGAAGAGACTATCGAGTACACAGA
TGCATCGGGGAAGTTGAAGTTCAACAAGCGGCCCGTTTCTACTGCTGCAG
GTGCGGCAGCAGGCAAGAGTGGGGAAAGTGGCAAAGGGTCCAAAAAGAAG
ACAAAGCGGGCAAAACTGGCCAAGCTGAATAATGCCAAGCTGCTTTCTTT
CGGAGACGACGAGGACGGATGAACGTGGTTGAGGTGGAGCTCTTGTCGTG
CAAGAACCATGATACTGGTATCGATCGATTAGCCGCAGAGACGGTCGATT
AGGATGAAGGTTCGGTGTCAAGGACTTCCTGACTCTCGAAGAGTCTCACC
ATCACAACTTTGTTGGCAGTGGCGGCGGGCGCGGCAGCAACAGCGGTAGC
ATCTGGGTGGGGTGAAGTCCCACCCATACTTTGAATGTGCGAGGCCAATC
GAGATTTCGTTGTGTGGTTCGGTCGTGCCACCGTTGTGACGTGCAGGCAG
GCCTGGAATCTGCTGTTTGTGGGTCGAAGCCAAAATTGTCTGTAAACATG
GAGACCCTTCAGCGTGTCAGCTACAGCAGCGGCAGCAAGGAGACGCGTGA
AAAATGTTGTACAAAGAGACCCCTTGCTTCTCTGCTGCAACAGCGTGCAC
CTGTAGGAGAGACGGCCCTCTCACCTCACACGAAGCCGATGCTCAGACTG
AGGCTCACTCTCTTGTACACGTCGGAAGCAAGCAACCGTAGGTGTATGTG
AACCACTACATAGACTTTGCTAGGCACTACTGCTGTATGTACCTGTGAGA
CAGCCAACGCAACCATGCACTGCAGCTAATCTCGGTTAAGCCCGAGGCAA
GTTTGCCTGAGCGGTGTAAGAATGTATGAATTGGGGTTCAGCAGCGTCCA
GGCAGAGCGCATGCAGCATAATCGGGAAGGACGTGCAATCGCATGGCCGT
GCACGACATTTTAGAGTGTTTGATTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig137:10558..13083+

>mRNA_E-fasciculatus_F_contig137.2735.1 ID=mRNA_E-fasciculatus_F_contig137.2735.1|Name=mRNA_E-fasciculatus_F_contig137.2735.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1068bp|location=Sequence derived from alignment at E-fasciculatus_F_contig137:10558..13083+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCCGGGCAAGGCCGTGGCCGAGATAGAGATTCCAACCAAGGCGCAGC
GGAGGGCAGGGGTGGGAACGGAGGGGGAGGGGCAGGCGGCGGGGGCGGGA
GCGGAGGCGCTTTTGAGGATTATGACGAAGAGGAGGTGGCGGCTTTGGAG
GCGTACATGAAGACGCACCCCAGCAAAGAAGAAGACAAAGAGGCCTTGCG
AAAACGCGCAAAAGAACTCTCAGCTAGCATAGGCTCTGGTCAGATGCCCG
GGCAAGGCCGTGGCCGAGATAGAGATTCCAACCAAGGCGCAGCGGAGGGC
AGGGGTGGGAACGGAGGGGGAGGGGCAGGCGGCGGGGGCGGGAGCGGAGG
CGCTTTTGAGGATTATGACGAAGAGGAGGTGGCGGCTTTGGAGGCGTACA
TGAAGACGCACCCCAGCAAAGAAGAAGACAAAGAGGCCTTGCGAAAACGC
GCAAAAGAACTCTCAGCTAGCATAGGCTCTGGTCAGGGTTCAGAAGCAAA
GGGCGGCAGAACAGCGGGGGGAAACGGGGGCGCGGCAGGACCAGGGTCGG
CAGGAGGTGCACCCAAAGCACCGCCTCCCCCAGAAGAGACTATCGAGTAC
ACAGATGCATCGGGGAAGTTGAAGTTCAACAAGCGGCCCGTTTCTACTGC
TGCAGGTGCGGCAGCAGGCAAGAGTGGGGAAAGTGGCAAAGGGTCCAAAA
AGAAGACAAAGCGGGCAAAACTGGCCAAGCTGAATAATGCCAAGCTGCTT
TCTTTCGGAGACGACGAGGACGGATGAGGTTCAGAAGCAAAGGGCGGCAG
AACAGCGGGGGGAAACGGGGGCGCGGCAGGACCAGGGTCGGCAGGAGGTG
CACCCAAAGCACCGCCTCCCCCAGAAGAGACTATCGAGTACACAGATGCA
TCGGGGAAGTTGAAGTTCAACAAGCGGCCCGTTTCTACTGCTGCAGGTGC
GGCAGCAGGCAAGAGTGGGGAAAGTGGCAAAGGGTCCAAAAAGAAGACAA
AGCGGGCAAAACTGGCCAAGCTGAATAATGCCAAGCTGCTTTCTTTCGGA
GACGACGAGGACGGATGA
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