mRNA_E-fasciculatus_F_contig13695.2732.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13695.2732.1
Unique NamemRNA_E-fasciculatus_F_contig13695.2732.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13695.2732.1 vs. uniprot
Match: A0A6H5JHC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHC6_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 7.280e-26
Identity = 132/181 (72.93%), Postives = 137/181 (75.69%), Query Frame = 1 
Query:   22 GWVGEDXXXXXXXXXXEACTEEVGADLESTVLADQDGDEET-LSMDXXXXXXXXXDDASNTDTDGETAARGVMAETDTGRQAARSDRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDALPASPGSSEKFSSWKVGGRGLLGRGSAKKTGRLLV 561
            GW GED          +A T+EVG DLESTVLADQDGDEE    ++    XXXXX  ASNTD D ETAAR +MAET  GR A RS R            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDA PASPGSSEKFSSWKVGGRGLLGRGSAKKTGRLLV
Sbjct:  274 GWFGEDGADSGGG---DAATKEVGVDLESTVLADQDGDEEMETGLNDTVVXXXXXXXASNTDADSETAARAMMAETRAGRPAGRSGR-----CGAAVSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDASPASPGSSEKFSSWKVGGRGLLGRGSAKKTGRLLV 446
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BLAST of mRNA_E-fasciculatus_F_contig13695.2732.1 vs. uniprot
Match: D7G1G0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1G0_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 2.930e-24
Identity = 105/165 (63.64%), Postives = 105/165 (63.64%), Query Frame = 1 
Query:   70 EACTEEVGADLESTVLADQDGDEETLSMDXXXXXXXXXDDASNTDTDGETAARGVMAETDTGRQAARSDRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDALPASPGSSEKFSSWKVGGRGLLGRGSAKKTGRLLVT 564
            EA TEEVG DLESTVLADQ  D        XXXXXXX DDASNTDTD ETAAR VMAET  GR A RS R                                      XXXXXXXXXXXXXXXXXXXDA PASPGSSEKFSSWKVGGRGLLGRGSAKK GRLLVT
Sbjct:  315 EAPTEEVGVDLESTVLADQGPDXXXXXX--XXXXXXXDDDASNTDTDSETAARAVMAETSAGRPAGRSGR-------CGAAVSGGGGQCPAGDHDESRCDQQGPRPSSXXXXXXXXXXXXXXXXXXXDASPASPGSSEKFSSWKVGGRGLLGRGSAKKNGRLLVT 470
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13695.2732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHC6_9PHAE7.280e-2672.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1G0_ECTSI2.930e-2463.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13695contigE-fasciculatus_F_contig13695:718..1283 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size567
Cds size564
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927863.493527-CDS-E-fasciculatus_F_contig13695:717..12811622927863.493527-CDS-E-fasciculatus_F_contig13695:717..1281Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13695 718..1281 +
1695995728.6215432-CDS-E-fasciculatus_F_contig13695:717..12811695995728.6215432-CDS-E-fasciculatus_F_contig13695:717..1281Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13695 718..1281 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13695.2732.1prot_E-fasciculatus_F_contig13695.2732.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13695 718..1281 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13695.2732.1

>prot_E-fasciculatus_F_contig13695.2732.1 ID=prot_E-fasciculatus_F_contig13695.2732.1|Name=mRNA_E-fasciculatus_F_contig13695.2732.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=188bp
DDDGDGGGWVGEDGAGGGGGGGGEACTEEVGADLESTVLADQDGDEETLS
MDLNDTVVADDDDASNTDTDGETAARGVMAETDTGRQAARSDRGGGGAAV
KGSGGQCTAAAGGGDVESGGDRQALRPSSSTAPPEEGENPAAGGAAAGGG
DALPASPGSSEKFSSWKVGGRGLLGRGSAKKTGRLLVT
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mRNA from alignment at E-fasciculatus_F_contig13695:718..1283+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13695.2732.1 ID=mRNA_E-fasciculatus_F_contig13695.2732.1|Name=mRNA_E-fasciculatus_F_contig13695.2732.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=566bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13695:718..1283+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GATGATGATGGTGATGGTGGTGGTTGGGTCGGGGAGGACGGGGCCGGCGG
CGGCGGCGGCGGCGGCGGCGAAGCGTGCACGGAGGAGGTAGGCGCAGACC
TGGAGTCAACGGTTTTGGCGGACCAGGACGGCGATGAGGAGACGCTTAGC
ATGGACCTCAACGACACGGTCGTGGCAGACGACGACGATGCCAGCAATAC
GGATACCGACGGCGAGACCGCTGCTCGCGGTGTGATGGCGGAGACGGACA
CCGGGCGTCAGGCCGCGAGATCCGACCGGGGTGGTGGTGGTGCCGCCGTG
AAGGGTAGCGGTGGACAATGCACCGCCGCCGCAGGCGGCGGCGATGTTGA
AAGCGGTGGCGATCGACAAGCCCTCCGGCCGTCGTCCTCCACGGCACCAC
CGGAGGAAGGAGAAAACCCAGCAGCAGGCGGTGCTGCTGCTGGGGGAGGG
GACGCCTTGCCGGCATCCCCGGGGTCCTCGGAGAAGTTCTCGTCCTGGAA
GGTGGGCGGGAGAGGGCTGCTCGGGAGGGGCTCCGCGAAGAAGACCGGGA
GGCTGCTGGTCACGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13695:718..1283+

>mRNA_E-fasciculatus_F_contig13695.2732.1 ID=mRNA_E-fasciculatus_F_contig13695.2732.1|Name=mRNA_E-fasciculatus_F_contig13695.2732.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1128bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13695:718..1283+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GATGATGATGGTGATGGTGGTGGTTGGGTCGGGGAGGACGGGGCCGGCGG
CGGCGGCGGCGGCGGCGGCGAAGCGTGCACGGAGGAGGTAGGCGCAGACC
TGGAGTCAACGGTTTTGGCGGACCAGGACGGCGATGAGGAGACGCTTAGC
ATGGACCTCAACGACACGGTCGTGGCAGACGACGACGATGCCAGCAATAC
GGATACCGACGGCGAGACCGCTGCTCGCGGTGTGATGGCGGAGACGGACA
CCGGGCGTCAGGCCGCGAGATCCGACCGGGGTGGTGGTGGTGCCGCCGTG
AAGGGTAGCGGTGGACAATGCACCGCCGCCGCAGGCGGCGGCGATGTTGA
AAGCGGTGGCGATCGACAAGCCCTCCGGCCGTCGTCCTCCACGGCACCAC
CGGAGGAAGGAGAAAACCCAGCAGCAGGCGGTGCTGCTGCTGGGGGAGGG
GACGCCTTGCCGGCATCCCCGGGGTCCTCGGAGAAGTTCTCGTCCTGGAA
GGTGGGCGGGAGAGGGCTGCTCGGGAGGGGCTCCGCGAAGAAGACCGGGA
GGCTGCTGGTCACGGATGATGATGGTGATGGTGGTGGTTGGGTCGGGGAG
GACGGGGCCGGCGGCGGCGGCGGCGGCGGCGGCGAAGCGTGCACGGAGGA
GGTAGGCGCAGACCTGGAGTCAACGGTTTTGGCGGACCAGGACGGCGATG
AGGAGACGCTTAGCATGGACCTCAACGACACGGTCGTGGCAGACGACGAC
GATGCCAGCAATACGGATACCGACGGCGAGACCGCTGCTCGCGGTGTGAT
GGCGGAGACGGACACCGGGCGTCAGGCCGCGAGATCCGACCGGGGTGGTG
GTGGTGCCGCCGTGAAGGGTAGCGGTGGACAATGCACCGCCGCCGCAGGC
GGCGGCGATGTTGAAAGCGGTGGCGATCGACAAGCCCTCCGGCCGTCGTC
CTCCACGGCACCACCGGAGGAAGGAGAAAACCCAGCAGCAGGCGGTGCTG
CTGCTGGGGGAGGGGACGCCTTGCCGGCATCCCCGGGGTCCTCGGAGAAG
TTCTCGTCCTGGAAGGTGGGCGGGAGAGGGCTGCTCGGGAGGGGCTCCGC
GAAGAAGACCGGGAGGCTGCTGGTCACG
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