mRNA_E-fasciculatus_F_contig1367.2720.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1367.2720.1
Unique NamemRNA_E-fasciculatus_F_contig1367.2720.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1367.2720.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1367contigE-fasciculatus_F_contig1367:13270..13488 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_002100.1
Exons1
Model size219
Cds size219
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927862.4616504-CDS-E-fasciculatus_F_contig1367:13269..134881622927862.4616504-CDS-E-fasciculatus_F_contig1367:13269..13488Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1367 13270..13488 +
1695995728.1525404-CDS-E-fasciculatus_F_contig1367:13269..134881695995728.1525404-CDS-E-fasciculatus_F_contig1367:13269..13488Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1367 13270..13488 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1367.2720.1prot_E-fasciculatus_F_contig1367.2720.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1367 13270..13488 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1367.2720.1

>prot_E-fasciculatus_F_contig1367.2720.1 ID=prot_E-fasciculatus_F_contig1367.2720.1|Name=mRNA_E-fasciculatus_F_contig1367.2720.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=73bp
RDRRRIGQTSVGGSVEGVGSRKHLGKANRDGIVSINSPFFTLSLSRTHTP
VFSLSIPHRFSPSLPSHSLCVP*
back to top

mRNA from alignment at E-fasciculatus_F_contig1367:13270..13488+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1367.2720.1 ID=mRNA_E-fasciculatus_F_contig1367.2720.1|Name=mRNA_E-fasciculatus_F_contig1367.2720.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=219bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1367:13270..13488+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGTGACAGGAGAAGAATCGGACAGACCTCAGTTGGTGGTTCTGTGGAAGG
AGTCGGAAGTCGGAAGCATCTCGGCAAGGCGAACCGAGATGGAATTGTTT
CCATTAATTCCCCATTTTTCACTCTCTCTCTCTCACGCACACACACACCT
GTCTTCTCTCTCTCAATTCCACATCGCTTCTCTCCCTCCCTCCCTTCCCA
CTCTCTCTGCGTGCCCTAA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1367:13270..13488+

>mRNA_E-fasciculatus_F_contig1367.2720.1 ID=mRNA_E-fasciculatus_F_contig1367.2720.1|Name=mRNA_E-fasciculatus_F_contig1367.2720.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=438bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1367:13270..13488+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGTGACAGGAGAAGAATCGGACAGACCTCAGTTGGTGGTTCTGTGGAAGG
AGTCGGAAGTCGGAAGCATCTCGGCAAGGCGAACCGAGATGGAATTGTTT
CCATTAATTCCCCATTTTTCACTCTCTCTCTCTCACGCACACACACACCT
GTCTTCTCTCTCTCAATTCCACATCGCTTCTCTCCCTCCCTCCCTTCCCA
CTCTCTCTGCGTGCCCTAACGTGACAGGAGAAGAATCGGACAGACCTCAG
TTGGTGGTTCTGTGGAAGGAGTCGGAAGTCGGAAGCATCTCGGCAAGGCG
AACCGAGATGGAATTGTTTCCATTAATTCCCCATTTTTCACTCTCTCTCT
CTCACGCACACACACACCTGTCTTCTCTCTCTCAATTCCACATCGCTTCT
CTCCCTCCCTCCCTTCCCACTCTCTCTGCGTGCCCTAA
back to top