mRNA_E-fasciculatus_F_contig13659.2713.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13659.2713.1
Unique NamemRNA_E-fasciculatus_F_contig13659.2713.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13659.2713.1 vs. uniprot
Match: D7G6M4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6M4_ECTSI)

HSP 1 Score: 386 bits (991), Expect = 2.280e-128
Identity = 211/238 (88.66%), Postives = 214/238 (89.92%), Query Frame = 1 
Query:    4 NAFTPQVGSFVFRIYDASDPVGTLATSHAWQVDAQGRDVELSLRFVLNQLRSTDGKGSVMGALAQLSHLLGHLETAPPQRYNRSVGSALWNAVTSARKQLKGVKLTSSGKGXXXXXXXXXANREKDSAADDRKLRAVHGAVWCVLNAIVKNPAAGALLAEAPPQMDPFNININRKGASLPCVAVCRLWQSTFCLFEEHYFETPQALAQHYKDDFGFTPSETRLEDIDQGVLRSLTDQV 717
            N F  QVGSFVFRIYDASDPVGTLATSHAWQVDAQGRDVELSLRFVLNQLRSTDGKGSVMGALAQLSHLLGHLETAPPQRYNRSVGSALWNAVTSARKQLKGVKLTSSGKGXXXXXXXXX NR+KDSAADDRKLRAVHGAVWCVLNAIVKNPAAGALLAEAPPQMDPFNIN  RKGASLPCVAVCRLWQ               ALA+HYKDDFGFTPSE RLEDIDQ VL SLTDQ+
Sbjct:   69 NCFYAQVGSFVFRIYDASDPVGTLATSHAWQVDAQGRDVELSLRFVLNQLRSTDGKGSVMGALAQLSHLLGHLETAPPQRYNRSVGSALWNAVTSARKQLKGVKLTSSGKGXXXXXXXXXXNRDKDSAADDRKLRAVHGAVWCVLNAIVKNPAAGALLAEAPPQMDPFNIN--RKGASLPCVAVCRLWQ---------------ALAKHYKDDFGFTPSEARLEDIDQAVLSSLTDQM 289
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BLAST of mRNA_E-fasciculatus_F_contig13659.2713.1 vs. uniprot
Match: A0A6H5KFD0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFD0_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.490e-23
Identity = 53/74 (71.62%), Postives = 54/74 (72.97%), Query Frame = 1 
Query:  496 MDPFNININRKGASLPCVAVCRLWQSTFCLFEEHYFETPQALAQHYKDDFGFTPSETRLEDIDQGVLRSLTDQV 717
            MDPFN N  RKGASLPCVAVCRLWQ               ALA+HYKDDFGFTPSE RLEDIDQ VLRSLTDQV
Sbjct:    1 MDPFNTN--RKGASLPCVAVCRLWQ---------------ALAKHYKDDFGFTPSEARLEDIDQAVLRSLTDQV 57
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BLAST of mRNA_E-fasciculatus_F_contig13659.2713.1 vs. uniprot
Match: A0A4D9DCB2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DCB2_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 3.840e-7
Identity = 36/103 (34.95%), Postives = 62/103 (60.19%), Query Frame = 1 
Query:    1 LNAFTPQ-VGSFVFRIYDASDPVGTLATSHAWQVDAQGRDVELSLRFVLNQLRSTDGKGSVMGALAQLSHLLGHLETAPPQRYNRSVGSALWNAVTSARKQLK 306
            ++ + P+  G FVFR++DA DPV T ATS  + V+ +GRDVE +LR + +QL+    + +++  L+Q + LL  +    P   +R + S LW  +  + +Q+K
Sbjct:  690 VSFYAPRSAGVFVFRLFDAKDPVRTHATSQVFLVEVRGRDVEGNLRLISSQLKE---RKTLVAGLSQYAFLLRGMAPHAP---SRQLQSLLWTCLLLSVQQIK 786
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BLAST of mRNA_E-fasciculatus_F_contig13659.2713.1 vs. uniprot
Match: W7TXG0_9STRA (PAP/25A-associated n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TXG0_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 7.040e-6
Identity = 34/103 (33.01%), Postives = 61/103 (59.22%), Query Frame = 1 
Query:    1 LNAFTPQ-VGSFVFRIYDASDPVGTLATSHAWQVDAQGRDVELSLRFVLNQLRSTDGKGSVMGALAQLSHLLGHLETAPPQRYNRSVGSALWNAVTSARKQLK 306
            ++ + P+  G FVFR++DA DPV T ATS  + V+ + R+VE +LR + +QL+    + +++  L+Q + LL  +    P   +R + S LW  +  + +Q+K
Sbjct:  261 VSFYAPRSAGVFVFRLFDAKDPVRTHATSQVFLVEVRDREVEGNLRLISSQLKE---RKTLVAGLSQFAFLLRGMAPYAP---SRQLQSLLWTCLQLSVQQIK 357
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13659.2713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G6M4_ECTSI2.280e-12888.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KFD0_9PHAE1.490e-2371.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4D9DCB2_9STRA3.840e-734.95Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
W7TXG0_9STRA7.040e-633.01PAP/25A-associated n=1 Tax=Nannochloropsis gaditan... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13659contigE-fasciculatus_F_contig13659:558..3135 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score390.2
Seed ortholog evalue7e-106
Seed eggNOG ortholog2880.D7G6M4
KEGG koko:K13291
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003824,GO:0005488,GO:0006139,GO:0006378,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010628,GO:0016070,GO:0016071,GO:0016073,GO:0016074,GO:0016180,GO:0016740,GO:0016772,GO:0016779,GO:0019219,GO:0019222,GO:0031123,GO:0031124,GO:0031126,GO:0031323,GO:0031325,GO:0034470,GO:0034641,GO:0034660,GO:0043144,GO:0043170,GO:0043628,GO:0043629,GO:0043631,GO:0044237,GO:0044238,GO:0045935,GO:0046483,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050265,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060147,GO:0060148,GO:0060255,GO:0060964,GO:0060966,GO:0060968,GO:0065007,GO:0070569,GO:0070920,GO:0071050,GO:0071076,GO:0071704,GO:0080090,GO:0090065,GO:0090304,GO:0097159,GO:0140098,GO:1900368,GO:1900370,GO:1901360,GO:1901363,GO:1903705
EggNOG free text desc.RNA uridylyltransferase activity
EggNOG OGsCOG5260@1,KOG2277@2759
EC2.7.7.52
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUridyltransferase
Ec32 orthologEc-00_010010.1
Exons4
Model size717
Cds size717
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13659.2713.1prot_E-fasciculatus_F_contig13659.2713.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13659 558..3135 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927861.806301-CDS-E-fasciculatus_F_contig13659:557..7821622927861.806301-CDS-E-fasciculatus_F_contig13659:557..782Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13659 558..782 +
1695995727.8301077-CDS-E-fasciculatus_F_contig13659:557..7821695995727.8301077-CDS-E-fasciculatus_F_contig13659:557..782Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13659 558..782 +
1622927861.8178837-CDS-E-fasciculatus_F_contig13659:1433..16261622927861.8178837-CDS-E-fasciculatus_F_contig13659:1433..1626Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13659 1434..1626 +
1695995727.8407228-CDS-E-fasciculatus_F_contig13659:1433..16261695995727.8407228-CDS-E-fasciculatus_F_contig13659:1433..1626Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13659 1434..1626 +
1622927861.8301606-CDS-E-fasciculatus_F_contig13659:2210..23621622927861.8301606-CDS-E-fasciculatus_F_contig13659:2210..2362Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13659 2211..2362 +
1695995727.8488455-CDS-E-fasciculatus_F_contig13659:2210..23621695995727.8488455-CDS-E-fasciculatus_F_contig13659:2210..2362Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13659 2211..2362 +
1622927861.8440294-CDS-E-fasciculatus_F_contig13659:2988..31351622927861.8440294-CDS-E-fasciculatus_F_contig13659:2988..3135Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13659 2989..3135 +
1695995727.8591309-CDS-E-fasciculatus_F_contig13659:2988..31351695995727.8591309-CDS-E-fasciculatus_F_contig13659:2988..3135Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13659 2989..3135 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13659.2713.1

>prot_E-fasciculatus_F_contig13659.2713.1 ID=prot_E-fasciculatus_F_contig13659.2713.1|Name=mRNA_E-fasciculatus_F_contig13659.2713.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=239bp
LNAFTPQVGSFVFRIYDASDPVGTLATSHAWQVDAQGRDVELSLRFVLNQ
LRSTDGKGSVMGALAQLSHLLGHLETAPPQRYNRSVGSALWNAVTSARKQ
LKGVKLTSSGKGGGGGGGGGTANREKDSAADDRKLRAVHGAVWCVLNAIV
KNPAAGALLAEAPPQMDPFNININRKGASLPCVAVCRLWQSTFCLFEEHY
FETPQALAQHYKDDFGFTPSETRLEDIDQGVLRSLTDQV
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mRNA from alignment at E-fasciculatus_F_contig13659:558..3135+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13659.2713.1 ID=mRNA_E-fasciculatus_F_contig13659.2713.1|Name=mRNA_E-fasciculatus_F_contig13659.2713.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2578bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13659:558..3135+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTGAACGCTTTCACCCCACAGGTCGGGTCGTTCGTGTTCCGCATCTACGA
CGCGAGCGATCCGGTGGGCACCCTGGCGACGAGCCACGCGTGGCAGGTGG
ACGCGCAGGGGAGAGACGTGGAGCTAAGCCTGAGGTTCGTGCTCAACCAG
CTCCGCAGCACCGACGGGAAGGGGTCGGTCATGGGGGCACTCGCCCAGCT
CTCTCACTTACTGGGACACCTCGAGGTGAGCAGCGAAGCATGGCGGCGGA
AGAACGGAAGGGGTGTTCGTATTTGCGGTGGCGGTCGGGTTGGTTTTTTT
GGATCCCTAGCGCCATACCTGTTGTCGCCTGGTGGCAAGGCAGGGTGGGG
GGGGGACGGGGGCGGGGGGGGTAGGGGGTGACGCTTGTCGTTGTTTGTAT
TCCCGACACACAGCCAACGGGAGGCGAGGCTTGCGTGCTTGTCTCTTGGC
GTCTTACTGTATCCTTGCTTCGAAAAAATCATACAACGTGCCCACGCCAT
TTTCCCCTTACGTAGGCGTGCTACCCCCGCCCCCGTCTCCTGTCCTGACT
TTCGTCCCCTCCCTCTGGGGCATGCACCCATGGTATATAGCTGGTTTGGC
GCAGCGAAACGCAAGGATGATGACCAAGCTTCTGGTTCACCCTTGTGAAA
CGTAGTACTGTAGACTGGGCCGACGAAAACTTATCTCTTCGTCCCAGCAT
TATTGCAGGGACCCCAAGGTCAACGGTCTAACGACTTCCGGCATGCGTTT
ACATGAGCACGCCCACCCTCTGGGGCATGCATACGCGGGCCACCGTGCGT
ACATATATATTTTATTCGGTATCGAGATCGATGAGCTTGTGGTCGACCCT
ACCCTCTTTTCCGCTCCTGCGCGCAGACCGCCCCGCCCCAGCGGTACAAC
CGCTCCGTGGGGAGCGCGCTCTGGAACGCCGTGACTTCGGCCCGCAAGCA
GCTCAAGGGCGTCAAGCTCACGTCTTCTGGCAAGGGTGGCGGCGGCGGCG
GCGGCGGCGGGACGGCGAACCGTGAGAAGGATTCTGCCGCTGACGACCGC
AAGCTGAGAGCTGTCCATGGTGAGAAGAGAGAGAGAGAAAGAGAGAGATA
GGGGGCGAGCGAGATATGTAGGGGAGAGAGACAGACAGACAGACAGACAG
ACAGACAGACAGGGAGTCAGACAGGGAGTCAGACAGGGAGTCAGACAGGA
AGACAGGGAGACAGGGCGAGATAGACAGGGAGTCAGACAGGAAGACAGGG
AGAAAGGAGAAAGAGAAGGGCGGGGTAAGAAGGGGGTACGCGGGGGAGGG
GAGGAGGGCGGTGGGTGTTCCTTTCGCTCCCGAAGACGTTGTAAAGATGT
TCTTGAGGCCACGTCGCCGCAAACTTGATTGTGGGCTTGGACGCCAGTCA
GGCGGATGAGCAGGAGCAAGATTGAGAGGCGGAGTCGATAGCGATTTTGT
GGGGTACTGTACCGTACCGTGGCTTGGATGGCTTGGAACCGCTTGCTGAG
GGTATGCAGTATGCAGGCAACCGAGTACAGTAGGTACATTTTTTAATACG
CCGGTTGGTGCATACATGCATATCTACGACCACACCTGAGTTAAGATCGT
CCTTCGATTTTTTTCTCCCACCACTCTCTCCCGTATCCGTCTGCCGATTG
CAGGGGCCGTGTGGTGCGTGTTGAACGCCATCGTCAAGAACCCCGCGGCC
GGCGCTCTCCTGGCGGAAGCCCCGCCGCAGATGGACCCCTTCAACATCAA
CATCAACAGGAAGGGGGCCAGCCTGCCCTGCGTGGCGGTGTGCAGGCTCT
GGCAGGTGAGGAGGAGAAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGGTC
GTCGTCGTCGCTGCGACGAGAGCGGTTCGTTTGGTTGTGACGAGGGGCGT
TCGTTGGGTTTGTGACGAGGCGTTTGTTGGTTGTGAGAGACGAGGGACGT
TCGTTCGTTCGTTCTGGTTTGATGGGGCTTTCGTTCGTTCGCTCGTTCCA
TTCACTCCATCCTCAGAGCTGCTTGCTGCACCTGTTGAGCTATGCTGTCC
GTGCTTGTCTCAAGCTCTTGACCCTTTTTTAGGCTTGCGTGTCGTGGACC
TGTTCGTTTGGATGGTGTCCAAGTCAAAAGTGGCGTGCGCCTTCTACTGT
GCTGTCGGTGTTTCGGTACAATGCCTCACGTGTGTATTTTACAACTATTT
TTCTATGAATTTCGTCTTCTTCGGAGCACGTTCTGCCCTTTCTATGGCTG
TGCTGTGCGTGTTTCGGTACCATACCTCATGTGCGTGTGTTTTTACCACA
TTTTTTTCGATTTCGTCTTTTTCCAGAGCACCTTCGGTACAATACCTCAC
CTTACTTGGGTACAATAATACCTCACGTTACGTATGTTTTTTACCCCCTT
TGCTTTGTCAATTTCGTCTTTTGTTTTTCAGAGCACCTTCTGCCTTTTCG
AGGAGCACTACTTCGAAACCCCGCAGGCTCTGGCCCAGCACTACAAGGAC
GACTTCGGCTTCACCCCTAGCGAGACGCGCTTGGAGGACATCGACCAGGG
CGTGCTGCGCTCTCTCACGGATCAGGTT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13659:558..3135+

>mRNA_E-fasciculatus_F_contig13659.2713.1 ID=mRNA_E-fasciculatus_F_contig13659.2713.1|Name=mRNA_E-fasciculatus_F_contig13659.2713.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1434bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13659:558..3135+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTGAACGCTTTCACCCCACAGGTCGGGTCGTTCGTGTTCCGCATCTACGA
CGCGAGCGATCCGGTGGGCACCCTGGCGACGAGCCACGCGTGGCAGGTGG
ACGCGCAGGGGAGAGACGTGGAGCTAAGCCTGAGGTTCGTGCTCAACCAG
CTCCGCAGCACCGACGGGAAGGGGTCGGTCATGGGGGCACTCGCCCAGCT
CTCTCACTTACTGGGACACCTCGAGTTGAACGCTTTCACCCCACAGGTCG
GGTCGTTCGTGTTCCGCATCTACGACGCGAGCGATCCGGTGGGCACCCTG
GCGACGAGCCACGCGTGGCAGGTGGACGCGCAGGGGAGAGACGTGGAGCT
AAGCCTGAGGTTCGTGCTCAACCAGCTCCGCAGCACCGACGGGAAGGGGT
CGGTCATGGGGGCACTCGCCCAGCTCTCTCACTTACTGGGACACCTCGAG
ACCGCCCCGCCCCAGCGGTACAACCGCTCCGTGGGGAGCGCGCTCTGGAA
CGCCGTGACTTCGGCCCGCAAGCAGCTCAAGGGCGTCAAGCTCACGTCTT
CTGGCAAGGGTGGCGGCGGCGGCGGCGGCGGCGGGACGGCGAACCGTGAG
AAGGATTCTGCCGCTGACGACCGCAAGCTGAGAGCTGTCCATGACCGCCC
CGCCCCAGCGGTACAACCGCTCCGTGGGGAGCGCGCTCTGGAACGCCGTG
ACTTCGGCCCGCAAGCAGCTCAAGGGCGTCAAGCTCACGTCTTCTGGCAA
GGGTGGCGGCGGCGGCGGCGGCGGCGGGACGGCGAACCGTGAGAAGGATT
CTGCCGCTGACGACCGCAAGCTGAGAGCTGTCCATGGGGCCGTGTGGTGC
GTGTTGAACGCCATCGTCAAGAACCCCGCGGCCGGCGCTCTCCTGGCGGA
AGCCCCGCCGCAGATGGACCCCTTCAACATCAACATCAACAGGAAGGGGG
CCAGCCTGCCCTGCGTGGCGGTGTGCAGGCTCTGGCAGGGGCCGTGTGGT
GCGTGTTGAACGCCATCGTCAAGAACCCCGCGGCCGGCGCTCTCCTGGCG
GAAGCCCCGCCGCAGATGGACCCCTTCAACATCAACATCAACAGGAAGGG
GGCCAGCCTGCCCTGCGTGGCGGTGTGCAGGCTCTGGCAGAGCACCTTCT
GCCTTTTCGAGGAGCACTACTTCGAAACCCCGCAGGCTCTGGCCCAGCAC
TACAAGGACGACTTCGGCTTCACCCCTAGCGAGACGCGCTTGGAGGACAT
CGACCAGGGCGTGCTGCGCTCTCTCACGGATCAGGTTAGCACCTTCTGCC
TTTTCGAGGAGCACTACTTCGAAACCCCGCAGGCTCTGGCCCAGCACTAC
AAGGACGACTTCGGCTTCACCCCTAGCGAGACGCGCTTGGAGGACATCGA
CCAGGGCGTGCTGCGCTCTCTCACGGATCAGGTT
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