mRNA_E-fasciculatus_F_contig1365.2710.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1365.2710.1
Unique NamemRNA_E-fasciculatus_F_contig1365.2710.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1365.2710.1 vs. uniprot
Match: D8LKC1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKC1_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 2.480e-21
Identity = 39/40 (97.50%), Postives = 40/40 (100.00%), Query Frame = 1
Query:   52 QVMNAGNCKVLLHPQWGSAVYPASLFCTAPSDLVQRLLEE 171
            QVMNAGNCKVLLHPQWGSAVYPASLFCTAPSDLVQRLL+E
Sbjct:   22 QVMNAGNCKVLLHPQWGSAVYPASLFCTAPSDLVQRLLDE 61          
BLAST of mRNA_E-fasciculatus_F_contig1365.2710.1 vs. uniprot
Match: A0A6H5K3L9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3L9_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 6.030e-20
Identity = 39/40 (97.50%), Postives = 39/40 (97.50%), Query Frame = 1
Query:   52 QVMNAGNCKVLLHPQWGSAVYPASLFCTAPSDLVQRLLEE 171
            QVMNAGNCKVLLHPQWGSAVYPASLFCTAPSD VQRLLEE
Sbjct:  132 QVMNAGNCKVLLHPQWGSAVYPASLFCTAPSDFVQRLLEE 171          
BLAST of mRNA_E-fasciculatus_F_contig1365.2710.1 vs. uniprot
Match: A0A150H4A2_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150H4A2_GONPE)

HSP 1 Score: 64.3 bits (155), Expect = 4.560e-12
Identity = 32/59 (54.24%), Postives = 39/59 (66.10%), Query Frame = 1
Query:    1 TRLSGYSPNMPFLSICT--QVMNAGNCKVLLHPQWGSAVYPASLFCTAPSDLVQRLLEE 171
            T L+   P +P LS+    Q  NAG CKVLLHP WGSAVYPASLF  AP + +Q  +E+
Sbjct:   32 TDLNNVYPEVPALSVLMGYQTANAGCCKVLLHPVWGSAVYPASLFTEAPLEALQAAIED 90          
BLAST of mRNA_E-fasciculatus_F_contig1365.2710.1 vs. uniprot
Match: A0A835Z3S3_9STRA (Methylmalonic aciduria and homocystinuria type D protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3S3_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 3.870e-11
Identity = 28/39 (71.79%), Postives = 32/39 (82.05%), Query Frame = 1
Query:   52 QVMNAGNCKVLLHPQWGSAVYPASLFCTAPSDLVQRLLE 168
            QVMNAG C+VLLHP WGS VYPAS F TAP + V+R+LE
Sbjct:  111 QVMNAGMCRVLLHPTWGSHVYPASCFTTAPIEAVERVLE 149          
BLAST of mRNA_E-fasciculatus_F_contig1365.2710.1 vs. uniprot
Match: A0A6A5B3P0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5B3P0_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 8.990e-11
Identity = 24/38 (63.16%), Postives = 33/38 (86.84%), Query Frame = 1
Query:   58 MNAGNCKVLLHPQWGSAVYPASLFCTAPSDLVQRLLEE 171
            ++AG CK+L+HP+WG+AVYPASLF TAPSDLV  ++ +
Sbjct:   34 LSAGMCKILIHPEWGAAVYPASLFTTAPSDLVLDIVSK 71          
BLAST of mRNA_E-fasciculatus_F_contig1365.2710.1 vs. uniprot
Match: A0A8J4C3C3_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4C3C3_9CHLO)

HSP 1 Score: 62.0 bits (149), Expect = 1.670e-10
Identity = 32/51 (62.75%), Postives = 34/51 (66.67%), Query Frame = 1
Query:    1 TRLSGYSPNMPFLSICT--QVMNAGNCKVLLHPQWGSAVYPASLFCTAPSD 147
            T L+   P +P LSI    Q  NAG CKVLLHP WGSAVYPASLF  AP D
Sbjct:  103 TELNTVYPEVPALSILMGYQTANAGCCKVLLHPVWGSAVYPASLFTEAPQD 153          
BLAST of mRNA_E-fasciculatus_F_contig1365.2710.1 vs. uniprot
Match: A0A7S3XWY3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWY3_HETAK)

HSP 1 Score: 62.4 bits (150), Expect = 1.730e-10
Identity = 27/39 (69.23%), Postives = 32/39 (82.05%), Query Frame = 1
Query:   55 VMNAGNCKVLLHPQWGSAVYPASLFCTAPSDLVQRLLEE 171
            V+NAG C+VLLHP WGSAVYPA+LF TAP + V  +LEE
Sbjct:  140 VLNAGMCRVLLHPVWGSAVYPATLFTTAPHEAVAEVLEE 178          
BLAST of mRNA_E-fasciculatus_F_contig1365.2710.1 vs. uniprot
Match: A0A7S2CG30_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CG30_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 2.640e-10
Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = 1
Query:   52 QVMNAGNCKVLLHPQWGSAVYPASLFCTAPSDLVQRL 162
            QVMNAG CKVLLHP+WG AVYPA++F  AP D+V  L
Sbjct:  139 QVMNAGPCKVLLHPRWGGAVYPATMFTNAPEDVVLEL 175          
BLAST of mRNA_E-fasciculatus_F_contig1365.2710.1 vs. uniprot
Match: A0A8J4C5X7_9CHLO (Uncharacterized protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4C5X7_9CHLO)

HSP 1 Score: 62.0 bits (149), Expect = 3.480e-10
Identity = 32/51 (62.75%), Postives = 34/51 (66.67%), Query Frame = 1
Query:    1 TRLSGYSPNMPFLSICT--QVMNAGNCKVLLHPQWGSAVYPASLFCTAPSD 147
            T L+   P +P LSI    Q  NAG CKVLLHP WGSAVYPASLF  AP D
Sbjct:  153 TELNTVYPEVPALSILMGYQTANAGCCKVLLHPVWGSAVYPASLFTEAPQD 203          
BLAST of mRNA_E-fasciculatus_F_contig1365.2710.1 vs. uniprot
Match: A0A7S0RSJ5_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas leiostraca TaxID=1034604 RepID=A0A7S0RSJ5_9CHLO)

HSP 1 Score: 60.8 bits (146), Expect = 4.570e-10
Identity = 25/36 (69.44%), Postives = 31/36 (86.11%), Query Frame = 1
Query:   61 NAGNCKVLLHPQWGSAVYPASLFCTAPSDLVQRLLE 168
            NAG CKVLLHP+WGSAVYPAS+F TAP+D +Q  ++
Sbjct:  126 NAGCCKVLLHPRWGSAVYPASMFTTAPADALQAAID 161          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1365.2710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LKC1_ECTSI2.480e-2197.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K3L9_9PHAE6.030e-2097.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A150H4A2_GONPE4.560e-1254.24Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
A0A835Z3S3_9STRA3.870e-1171.79Methylmalonic aciduria and homocystinuria type D p... [more]
A0A6A5B3P0_9STRA8.990e-1163.16Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A8J4C3C3_9CHLO1.670e-1062.75Uncharacterized protein n=1 Tax=Volvox reticulifer... [more]
A0A7S3XWY3_HETAK1.730e-1069.23Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2CG30_9STRA2.640e-1070.27Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A8J4C5X7_9CHLO3.480e-1062.75Uncharacterized protein n=1 Tax=Volvox reticulifer... [more]
A0A7S0RSJ5_9CHLO4.570e-1069.44Hypothetical protein n=1 Tax=Chlamydomonas leiostr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1365contigE-fasciculatus_F_contig1365:16300..16470 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.8
Seed ortholog evalue1.5e-15
Seed eggNOG ortholog2880.D8LKC1
EggNOG free text desc.Methylmalonic aciduria and homocystinuria type D protein
EggNOG OGs2E84A@1,2SEMT@2759
Ec32 ortholog descriptionMethylmalonic aciduria and homocystinuria type D protein
Ec32 orthologEc-01_009710.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size144
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927861.5697162-CDS-E-fasciculatus_F_contig1365:16299..164431622927861.5697162-CDS-E-fasciculatus_F_contig1365:16299..16443Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1365 16300..16443 -
1695995727.72474-CDS-E-fasciculatus_F_contig1365:16299..164431695995727.72474-CDS-E-fasciculatus_F_contig1365:16299..16443Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1365 16300..16443 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927861.5803185-UTR-E-fasciculatus_F_contig1365:16443..164701622927861.5803185-UTR-E-fasciculatus_F_contig1365:16443..16470Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1365 16444..16470 -
1695995727.7434673-UTR-E-fasciculatus_F_contig1365:16443..164701695995727.7434673-UTR-E-fasciculatus_F_contig1365:16443..16470Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1365 16444..16470 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1365.2710.1prot_E-fasciculatus_F_contig1365.2710.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1365 16300..16443 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1365.2710.1

>prot_E-fasciculatus_F_contig1365.2710.1 ID=prot_E-fasciculatus_F_contig1365.2710.1|Name=mRNA_E-fasciculatus_F_contig1365.2710.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=48bp
MPFLSICTQVMNAGNCKVLLHPQWGSAVYPASLFCTAPSDLVQRLLEE
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mRNA from alignment at E-fasciculatus_F_contig1365:16300..16470-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1365.2710.1 ID=mRNA_E-fasciculatus_F_contig1365.2710.1|Name=mRNA_E-fasciculatus_F_contig1365.2710.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=171bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1365:16300..16470- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACACGACTAAGCGGATATTCACCCAACATGCCCTTCCTTTCGATCTGCAC GCAGGTGATGAACGCGGGCAACTGTAAGGTCCTGCTGCACCCCCAGTGGG GCTCCGCCGTGTACCCGGCGAGTTTGTTCTGTACGGCCCCGTCGGACTTG GTGCAGCGTCTGCTGGAGGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1365:16300..16470-

>mRNA_E-fasciculatus_F_contig1365.2710.1 ID=mRNA_E-fasciculatus_F_contig1365.2710.1|Name=mRNA_E-fasciculatus_F_contig1365.2710.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=288bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1365:16300..16470- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCCTTCCTTTCGATCTGCACGCAGGTGATGAACGCGGGCAACTGTAA
GGTCCTGCTGCACCCCCAGTGGGGCTCCGCCGTGTACCCGGCGAGTTTGT
TCTGTACGGCCCCGTCGGACTTGGTGCAGCGTCTGCTGGAGGAGATGCCC
TTCCTTTCGATCTGCACGCAGGTGATGAACGCGGGCAACTGTAAGGTCCT
GCTGCACCCCCAGTGGGGCTCCGCCGTGTACCCGGCGAGTTTGTTCTGTA
CGGCCCCGTCGGACTTGGTGCAGCGTCTGCTGGAGGAG
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