mRNA_E-fasciculatus_F_contig13647.2706.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13647.2706.1
Unique NamemRNA_E-fasciculatus_F_contig13647.2706.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13647.2706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13647contigE-fasciculatus_F_contig13647:2..813 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size812
Cds size510
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13647.2706.1prot_E-fasciculatus_F_contig13647.2706.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13647 11..520 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927861.10313-UTR-E-fasciculatus_F_contig13647:1..101622927861.10313-UTR-E-fasciculatus_F_contig13647:1..10Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13647 2..10 +
1695995727.4769762-UTR-E-fasciculatus_F_contig13647:1..101695995727.4769762-UTR-E-fasciculatus_F_contig13647:1..10Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13647 2..10 +
1622927861.1400218-UTR-E-fasciculatus_F_contig13647:520..8131622927861.1400218-UTR-E-fasciculatus_F_contig13647:520..813Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13647 521..813 +
1695995727.498215-UTR-E-fasciculatus_F_contig13647:520..8131695995727.498215-UTR-E-fasciculatus_F_contig13647:520..813Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig13647 521..813 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927861.1250885-CDS-E-fasciculatus_F_contig13647:10..5201622927861.1250885-CDS-E-fasciculatus_F_contig13647:10..520Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13647 11..520 +
1695995727.4847488-CDS-E-fasciculatus_F_contig13647:10..5201695995727.4847488-CDS-E-fasciculatus_F_contig13647:10..520Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13647 11..520 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13647.2706.1

>prot_E-fasciculatus_F_contig13647.2706.1 ID=prot_E-fasciculatus_F_contig13647.2706.1|Name=mRNA_E-fasciculatus_F_contig13647.2706.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=170bp
MKKRGTVLVLCVVIICAWYAGGRERVSRVWLWCRVVIFFVALVMHRSRGR
GGALSGAISGTRLSRSPNPGQILVEISCIVENPWEMAASDLGLARLDAHT
RYPEFAEIDANLNFLRLQLSCACVFICVFHKERAAPPIKQHLGVVVFRSV
YQVFVATEGTKESHYGLRH*
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mRNA from alignment at E-fasciculatus_F_contig13647:2..813+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13647.2706.1 ID=mRNA_E-fasciculatus_F_contig13647.2706.1|Name=mRNA_E-fasciculatus_F_contig13647.2706.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=812bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13647:2..813+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTCAGCATAATGAAGAAAAGGGGGACTGTATTGGTGCTTTGTGTTGTGAT
TATTTGCGCTTGGTATGCGGGGGGGAGGGAACGCGTTAGTCGCGTGTGGC
TATGGTGTCGTGTTGTTATTTTTTTCGTTGCGCTTGTTATGCATCGGTCG
CGGGGGCGCGGGGGCGCGTTGTCGGGTGCGATCTCCGGGACGAGACTGTC
GCGATCGCCGAATCCGGGACAGATTTTGGTCGAGATCTCGTGTATAGTAG
AAAACCCGTGGGAGATGGCAGCTTCCGATCTTGGCTTGGCGAGACTTGAC
GCGCACACGAGATACCCGGAATTTGCTGAGATTGATGCAAACTTGAACTT
TTTGAGACTCCAACTCTCTTGTGCGTGCGTTTTTATTTGCGTTTTTCACA
AGGAAAGAGCAGCACCGCCGATCAAGCAGCATTTAGGTGTTGTTGTGTTT
CGATCAGTTTACCAAGTGTTTGTTGCAACAGAAGGAACGAAAGAATCTCA
CTACGGACTGCGGCACTGAAAGCTCGTCGCCAACAGCTCTGCCGCGTAGA
TACAACTGCGCCGACGAAATCGTGCAGGGCGATGTGCCCAGCACCCTGTT
GTTGGTGTTGTTCTTGTGGATGTTGTCTTGGACAGCACTGAACCGGTTCC
AGCTATTTTCGTCGGACGTCAGTCATCTGGGGAAGAAAGGGAAGAAACGT
TACACCAAAGACGAGGGACTACACAGTACAGCAGCACTAGTGCCTACACG
AGACGGGACACAAAAGGGACGGTTGTTTCACAGCCGCCTTTTTAGCAGAG
CAGTGATTCGGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13647:2..813+

>mRNA_E-fasciculatus_F_contig13647.2706.1 ID=mRNA_E-fasciculatus_F_contig13647.2706.1|Name=mRNA_E-fasciculatus_F_contig13647.2706.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1020bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13647:2..813+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAAGAAAAGGGGGACTGTATTGGTGCTTTGTGTTGTGATTATTTGCGC
TTGGTATGCGGGGGGGAGGGAACGCGTTAGTCGCGTGTGGCTATGGTGTC
GTGTTGTTATTTTTTTCGTTGCGCTTGTTATGCATCGGTCGCGGGGGCGC
GGGGGCGCGTTGTCGGGTGCGATCTCCGGGACGAGACTGTCGCGATCGCC
GAATCCGGGACAGATTTTGGTCGAGATCTCGTGTATAGTAGAAAACCCGT
GGGAGATGGCAGCTTCCGATCTTGGCTTGGCGAGACTTGACGCGCACACG
AGATACCCGGAATTTGCTGAGATTGATGCAAACTTGAACTTTTTGAGACT
CCAACTCTCTTGTGCGTGCGTTTTTATTTGCGTTTTTCACAAGGAAAGAG
CAGCACCGCCGATCAAGCAGCATTTAGGTGTTGTTGTGTTTCGATCAGTT
TACCAAGTGTTTGTTGCAACAGAAGGAACGAAAGAATCTCACTACGGACT
GCGGCACTGAATGAAGAAAAGGGGGACTGTATTGGTGCTTTGTGTTGTGA
TTATTTGCGCTTGGTATGCGGGGGGGAGGGAACGCGTTAGTCGCGTGTGG
CTATGGTGTCGTGTTGTTATTTTTTTCGTTGCGCTTGTTATGCATCGGTC
GCGGGGGCGCGGGGGCGCGTTGTCGGGTGCGATCTCCGGGACGAGACTGT
CGCGATCGCCGAATCCGGGACAGATTTTGGTCGAGATCTCGTGTATAGTA
GAAAACCCGTGGGAGATGGCAGCTTCCGATCTTGGCTTGGCGAGACTTGA
CGCGCACACGAGATACCCGGAATTTGCTGAGATTGATGCAAACTTGAACT
TTTTGAGACTCCAACTCTCTTGTGCGTGCGTTTTTATTTGCGTTTTTCAC
AAGGAAAGAGCAGCACCGCCGATCAAGCAGCATTTAGGTGTTGTTGTGTT
TCGATCAGTTTACCAAGTGTTTGTTGCAACAGAAGGAACGAAAGAATCTC
ACTACGGACTGCGGCACTGA
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