mRNA_E-fasciculatus_F_contig13645.2704.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13645.2704.1
Unique NamemRNA_E-fasciculatus_F_contig13645.2704.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13645.2704.1 vs. uniprot
Match: A0A6H5KBQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBQ3_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 3.120e-30
Identity = 57/73 (78.08%), Postives = 61/73 (83.56%), Query Frame = 1 
Query:  283 LPSRRRAIQSSPSENMSSADRAALVTLFLSTDGANWKTKNNWNTDAGLATWTGVGLNHAGRVVELSLPNNNLH 501
            +P  RRA + SPSE MSS DRAAL+ LF STDGANWK K NWNTDAGLATW GV LNHAGRVVEL+LPNNNLH
Sbjct:    4 IPFFRRAFRRSPSEQMSSMDRAALIALFHSTDGANWKRKRNWNTDAGLATWEGVRLNHAGRVVELALPNNNLH 76
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BLAST of mRNA_E-fasciculatus_F_contig13645.2704.1 vs. uniprot
Match: A0A6H5K1I9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1I9_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 8.370e-30
Identity = 61/93 (65.59%), Postives = 64/93 (68.82%), Query Frame = 1 
Query:  277 WYLPSRRRAIQSSPSEN------------------MSSADRAALVTLFLSTDGANWKTKNNWNTDAGLATWTGVGLNHAGRVVELSLPNNNLH 501
            W+LP   RAIQ SPSE                   MSS DRAAL+ LF STDGANWK K+NWNTDAGLATW GV LNHAGRVVELSLPNNNLH
Sbjct:    8 WFLPFCPRAIQRSPSEQVPSMDFFRRAFQXXXXXKMSSIDRAALIALFRSTDGANWKWKSNWNTDAGLATWEGVSLNHAGRVVELSLPNNNLH 100
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BLAST of mRNA_E-fasciculatus_F_contig13645.2704.1 vs. uniprot
Match: A0A6H5K9E9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9E9_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 5.600e-29
Identity = 66/109 (60.55%), Postives = 71/109 (65.14%), Query Frame = 1 
Query:  211 AVREDPQPENPAARTSSSTQDDW------------YLPSRRRAIQSSPSENMSSADRAALVTLFLSTDGANWKTKNNWNTDAGLATWTGVGLNHAGRVVELSLPNNNLH 501
            A REDP  ENPAARTSS TQ D                SR   +       MSS DRAAL+ L+ STDGANWK K NWNT+AGLATW GV LNHAGRVVEL+LPNNNLH
Sbjct:   13 AEREDPTAENPAARTSSWTQGDKPGKPDGATTEPVSGSSREADMDHMTQAQMSSMDRAALIALYRSTDGANWKRKRNWNTEAGLATWQGVRLNHAGRVVELALPNNNLH 121
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BLAST of mRNA_E-fasciculatus_F_contig13645.2704.1 vs. uniprot
Match: A0A6H5JA93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA93_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 3.950e-27
Identity = 60/95 (63.16%), Postives = 63/95 (66.32%), Query Frame = 1 
Query:  280 YLPSRRRAIQSSPSENMSSADR---------------------AALVTLFLSTDGANWKTKNNWNTDAGLATWTGVGLNHAGRVVELSLPNNNLH 501
            YLP   RAIQSSPSE +SS DR                     AAL+ LF STDGANWK K NWNTDAGLATW GV LNHAGRVVEL+LPNNNLH
Sbjct:   12 YLPFCPRAIQSSPSEQVSSMDRIXXXXXXXXXXXXXXXXXXXXAALIALFHSTDGANWKRKRNWNTDAGLATWEGVRLNHAGRVVELALPNNNLH 106
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BLAST of mRNA_E-fasciculatus_F_contig13645.2704.1 vs. uniprot
Match: D7FUA0_ECTSI (Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA0_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 1.340e-26
Identity = 57/69 (82.61%), Postives = 60/69 (86.96%), Query Frame = 1 
Query:  295 RRAIQSSPSENMSSADRAALVTLFLSTDGANWKTKNNWNTDAGLATWTGVGLNHAGRVVELSLPNNNLH 501
            RRA QSSPSE +SS DRAALV LF STDGANWKT +NWNTDAGLATW GV +NHAGRVV LSLPNNNLH
Sbjct:   28 RRAFQSSPSELVSSMDRAALVALFRSTDGANWKTNSNWNTDAGLATWEGVKVNHAGRVVGLSLPNNNLH 96
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13645.2704.1 vs. uniprot
Match: A0A6H5KMQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ1_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 4.420e-26
Identity = 59/92 (64.13%), Postives = 63/92 (68.48%), Query Frame = 1 
Query:  280 YLPSRRRAIQSSPS------------------ENMSSADRAALVTLFLSTDGANWKTKNNWNTDAGLATWTGVGLNHAGRVVELSLPNNNLH 501
            YLP   RAI+SSPS                  E MSS DRAAL+ LF STDGANWK K+NWNTDAGLA+W GV LNHAGRVV LSLPNNNLH
Sbjct:   12 YLPFCPRAIESSPSDQVSSMDFLAEAFRRSRPEQMSSMDRAALIALFHSTDGANWKRKSNWNTDAGLASWEGVRLNHAGRVVGLSLPNNNLH 103
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BLAST of mRNA_E-fasciculatus_F_contig13645.2704.1 vs. uniprot
Match: D7FUA2_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUA2_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 2.520e-24
Identity = 54/74 (72.97%), Postives = 61/74 (82.43%), Query Frame = 1 
Query:  277 WYLPSRRRAIQSSPSENMSSADRAALVTLFLSTDGANWKTKNNWNTDAGLATWTGVGLNHAGRVVELSLPNNNL 498
            + +P  RRA +SSPSE +SS DRAALV LF STDGANWKT +NWNTDAGLATW GV +NHAGRVV L LP+NNL
Sbjct:    2 YRVPFFRRAFRSSPSEQVSSIDRAALVALFRSTDGANWKTNSNWNTDAGLATWKGVKVNHAGRVVGLILPDNNL 75
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BLAST of mRNA_E-fasciculatus_F_contig13645.2704.1 vs. uniprot
Match: A0A6H5KJF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJF4_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 2.700e-24
Identity = 48/58 (82.76%), Postives = 51/58 (87.93%), Query Frame = 1 
Query:  328 MSSADRAALVTLFLSTDGANWKTKNNWNTDAGLATWTGVGLNHAGRVVELSLPNNNLH 501
            MSS DRAAL+ LF STDGANWK K NWNT+AGLATW GV LNHAGRVVEL+LPNNNLH
Sbjct:    1 MSSMDRAALIALFHSTDGANWKRKRNWNTEAGLATWEGVRLNHAGRVVELALPNNNLH 58
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13645.2704.1 vs. uniprot
Match: A0A6H5KKN5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKN5_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 4.140e-24
Identity = 57/95 (60.00%), Postives = 61/95 (64.21%), Query Frame = 1 
Query:  280 YLPSRRRAIQSSPSENMSSADR---------------------AALVTLFLSTDGANWKTKNNWNTDAGLATWTGVGLNHAGRVVELSLPNNNLH 501
            Y P   RAIQSSPSE +SS DR                     AAL+ LF STDG+NWK K+NWNTDAGLATW GV LNHAGRVV L LPNNNLH
Sbjct:   26 YPPFCPRAIQSSPSEKVSSMDRVRFFRXXXXXXXXXXXXXXXXAALIALFHSTDGSNWKRKSNWNTDAGLATWEGVELNHAGRVVGLFLPNNNLH 120
[Close]
BLAST of mRNA_E-fasciculatus_F_contig13645.2704.1 vs. uniprot
Match: D8LF65_ECTSI (Hypothetical leucine-rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF65_ECTSI)

HSP 1 Score: 88.2 bits (217), Expect = 2.280e-19
Identity = 41/58 (70.69%), Postives = 48/58 (82.76%), Query Frame = 1 
Query:  328 MSSADRAALVTLFLSTDGANWKTKNNWNTDAGLATWTGVGLNHAGRVVELSLPNNNLH 501
            MS+ DRAAL+ LF STDGANWKT +NW+TDA LATW GV +N  GRVV+L LP+NNLH
Sbjct:    1 MSTMDRAALIALFRSTDGANWKTNSNWDTDAELATWAGVEVNDEGRVVQLILPDNNLH 58
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13645.2704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBQ3_9PHAE3.120e-3078.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1I9_9PHAE8.370e-3065.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9E9_9PHAE5.600e-2960.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JA93_9PHAE3.950e-2763.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUA0_ECTSI1.340e-2682.61Leucine Rich Repeat Protein n=1 Tax=Ectocarpus sil... [more]
A0A6H5KMQ1_9PHAE4.420e-2664.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUA2_ECTSI2.520e-2472.97Leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
A0A6H5KJF4_9PHAE2.700e-2482.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KKN5_9PHAE4.140e-2460.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LF65_ECTSI2.280e-1970.69Hypothetical leucine-rich repeat protein n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13645contigE-fasciculatus_F_contig13645:496..2003 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score117.5
Seed ortholog evalue6.1e-24
Seed eggNOG ortholog2880.D7FUA0
KEGG koko:K04730,ko:K04733
KEGG Pathwayko04010,ko04064,ko04620,ko04621,ko04624,ko04722,ko05133,ko05140,ko05142,ko05145,ko05152,ko05162,ko05164,ko05169,map04010,map04064,map04620,map04621,map04624,map04722,map05133,map05140,map05142,map05145,map05152,map05162,map05164,map05169
KEGG ModuleM00686
GOsGO:0005575,GO:0005623,GO:0005886,GO:0005911,GO:0009506,GO:0016020,GO:0030054,GO:0042995,GO:0044464,GO:0055044,GO:0071944,GO:0090406,GO:0120025
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGs2QQYD@2759,COG4886@1
EC2.7.11.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001
Hectar predicted targeting categoryother localisation
Exons4
Model size504
Cds size501
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13645.2704.1prot_E-fasciculatus_F_contig13645.2704.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13645 496..2002 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927860.9395738-CDS-E-fasciculatus_F_contig13645:495..5681622927860.9395738-CDS-E-fasciculatus_F_contig13645:495..568Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13645 496..568 +
1695995727.400238-CDS-E-fasciculatus_F_contig13645:495..5681695995727.400238-CDS-E-fasciculatus_F_contig13645:495..568Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13645 496..568 +
1622927860.9541595-CDS-E-fasciculatus_F_contig13645:730..8021622927860.9541595-CDS-E-fasciculatus_F_contig13645:730..802Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13645 731..802 +
1695995727.4153585-CDS-E-fasciculatus_F_contig13645:730..8021695995727.4153585-CDS-E-fasciculatus_F_contig13645:730..802Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13645 731..802 +
1622927860.9664075-CDS-E-fasciculatus_F_contig13645:1262..13951622927860.9664075-CDS-E-fasciculatus_F_contig13645:1262..1395Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13645 1263..1395 +
1695995727.4265246-CDS-E-fasciculatus_F_contig13645:1262..13951695995727.4265246-CDS-E-fasciculatus_F_contig13645:1262..1395Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13645 1263..1395 +
1622927860.9766917-CDS-E-fasciculatus_F_contig13645:1779..20021622927860.9766917-CDS-E-fasciculatus_F_contig13645:1779..2002Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13645 1780..2002 +
1695995727.4387114-CDS-E-fasciculatus_F_contig13645:1779..20021695995727.4387114-CDS-E-fasciculatus_F_contig13645:1779..2002Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13645 1780..2002 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13645.2704.1

>prot_E-fasciculatus_F_contig13645.2704.1 ID=prot_E-fasciculatus_F_contig13645.2704.1|Name=mRNA_E-fasciculatus_F_contig13645.2704.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=167bp
GPIPESLGALSELKTLAMEDNKLTGPIPEELGALDSLEYLCLHSNQLSGG
PAEGESLESWRARLRQQEQAAVREDPQPENPAARTSSSTQDDWYLPSRRR
AIQSSPSENMSSADRAALVTLFLSTDGANWKTKNNWNTDAGLATWTGVGL
NHAGRVVELSLPNNNLH
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mRNA from alignment at E-fasciculatus_F_contig13645:496..2003+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13645.2704.1 ID=mRNA_E-fasciculatus_F_contig13645.2704.1|Name=mRNA_E-fasciculatus_F_contig13645.2704.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1508bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13645:496..2003+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGACCCATCCCCGAGTCGCTTGGAGCTCTCAGCGAGCTGAAGACGCTTGC
TATGGAGGATAACAAGCTCACTGGTGAGATAGGATAATGTGGGAAGAATG
ATTACTTTTGTGGCTCGGTCCGTGGTAGGTGGCACCGATGTTTAACTAGC
CCGCCGTATCTAGATGTTTACCTACACCCAGTCTACAGCTGCGAACTAAC
GTGCTCTCACCATTTCGCTCGTTCGTTATGTGCAGGGCCCATCCCGGAAG
AGCTTGGAGCTCTGGACAGTTTGGAATATCTTTGTCTCCACAGCAACCAA
CTCTCAGGTTAGGCAGAGTGTAATATTGTACAACAGGTGGCGTCCCAGGA
AAGCCTAAACCTTTCCATAGATGTTTGTGGGCTATGTAAAGAAATCATCT
CTGGGAAGTCGTGCATCGGTTGCTGGATCCGAGGCTGTCTATTCCGTCAA
CCAAGATATTGGTGCAGACACTCGATCCGGCACCATGGAGGCTCGGTCTC
TTTCCGCGCGCTCTTTCTACATATACATCTCTCGTTGTAACTATAAGAGC
GTGTTATGATGATGCTGACAAGGACACGGCCGGGAAGGTCGTGCAAAAGC
AAAGTCATTGAAAGCACAGTAGGGTGGGGAAGCAGATATTTGACACAAAT
GTATATGGGCTCTTCTTGTGGTATTGCGTAACTCGTCCACCGCCGTGACG
AGTGAAAGTTTCTTATAGGGCGGACGTGCATATCATTTCACTCACGCCTG
GTGTTCGTGCTACTCAGGAGGGCCGGCGGAGGGCGAGAGTCTTGAATCGT
GGAGGGCAAGACTGCGGCAGCAGGAGCAGGCAGCTGTACGCGAAGACCCA
CAACCAGAAAACCCCGCCGCGCGCACCAGTTCCTCGACACAAGACGACTG
GTCTGTTTCGCACCATCTGTTGTAGGCGCCGTTCTATGCCGTCCGGCATA
TATGCTTGAGGACAGCCGGGCTCACATACAAGCAAGTCTGTATCTTGCCT
CCTGCGGTGTTTCTTGCCTTCAATTATCACGCGAAAAGGACCTCCCATCT
TTTTGTGTGTACTCACTGCTATGCGGTTTTTACTTCTGTAATGCTATACG
TTTGGCCACTCCCAGCAGGGTTGGTCCCATGATCAGAGCCAGAAGGTTTC
ATGATTTTTCTCGCTGAGTCTAGTCGCTTCATATTGTAGCCACTGTCGTG
TAACCGAGCGCCACACGACACGGTGTTGAAGACACTCTGACTCGCTTCTT
TTGTTTTGTCGCTATTGTCTCCCTCTCGTCGCAGGTATCTTCCTTCTCGC
CGTCGTGCAATCCAAAGCAGCCCCTCGGAGAATATGTCTTCCGCAGATCG
TGCCGCACTGGTTACGCTGTTTCTTTCGACCGATGGAGCGAATTGGAAGA
CGAAAAACAACTGGAACACGGATGCGGGGCTAGCTACTTGGACGGGGGTC
GGACTCAACCACGCGGGCCGCGTGGTGGAGCTGTCTCTGCCGAACAACAA
CCTCCATG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13645:496..2003+

>mRNA_E-fasciculatus_F_contig13645.2704.1 ID=mRNA_E-fasciculatus_F_contig13645.2704.1|Name=mRNA_E-fasciculatus_F_contig13645.2704.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1002bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13645:496..2003+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGACCCATCCCCGAGTCGCTTGGAGCTCTCAGCGAGCTGAAGACGCTTGC
TATGGAGGATAACAAGCTCACTGGGACCCATCCCCGAGTCGCTTGGAGCT
CTCAGCGAGCTGAAGACGCTTGCTATGGAGGATAACAAGCTCACTGGGCC
CATCCCGGAAGAGCTTGGAGCTCTGGACAGTTTGGAATATCTTTGTCTCC
ACAGCAACCAACTCTCAGGGCCCATCCCGGAAGAGCTTGGAGCTCTGGAC
AGTTTGGAATATCTTTGTCTCCACAGCAACCAACTCTCAGGAGGGCCGGC
GGAGGGCGAGAGTCTTGAATCGTGGAGGGCAAGACTGCGGCAGCAGGAGC
AGGCAGCTGTACGCGAAGACCCACAACCAGAAAACCCCGCCGCGCGCACC
AGTTCCTCGACACAAGACGACTGGAGGGCCGGCGGAGGGCGAGAGTCTTG
AATCGTGGAGGGCAAGACTGCGGCAGCAGGAGCAGGCAGCTGTACGCGAA
GACCCACAACCAGAAAACCCCGCCGCGCGCACCAGTTCCTCGACACAAGA
CGACTGGTATCTTCCTTCTCGCCGTCGTGCAATCCAAAGCAGCCCCTCGG
AGAATATGTCTTCCGCAGATCGTGCCGCACTGGTTACGCTGTTTCTTTCG
ACCGATGGAGCGAATTGGAAGACGAAAAACAACTGGAACACGGATGCGGG
GCTAGCTACTTGGACGGGGGTCGGACTCAACCACGCGGGCCGCGTGGTGG
AGCTGTCTCTGCCGAACAACAACCTCCATGTATCTTCCTTCTCGCCGTCG
TGCAATCCAAAGCAGCCCCTCGGAGAATATGTCTTCCGCAGATCGTGCCG
CACTGGTTACGCTGTTTCTTTCGACCGATGGAGCGAATTGGAAGACGAAA
AACAACTGGAACACGGATGCGGGGCTAGCTACTTGGACGGGGGTCGGACT
CAACCACGCGGGCCGCGTGGTGGAGCTGTCTCTGCCGAACAACAACCTCC
AT
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