mRNA_E-fasciculatus_F_contig13640.2701.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13640.2701.1
Unique NamemRNA_E-fasciculatus_F_contig13640.2701.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13640.2701.1 vs. uniprot
Match: D8LCZ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCZ5_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 1.290e-19
Identity = 38/40 (95.00%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:    1 PKVDIPRAGDIVVRGPDWAWGEQDGDAAGRGLVVGLATWG 120
            PKVD+PRAGD+VVRGPDWAWGEQDGDAAGRGLVVGLATWG
Sbjct: 1899 PKVDLPRAGDVVVRGPDWAWGEQDGDAAGRGLVVGLATWG 1938
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BLAST of mRNA_E-fasciculatus_F_contig13640.2701.1 vs. uniprot
Match: A0A6H5KT07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT07_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 3.280e-19
Identity = 37/40 (92.50%), Postives = 40/40 (100.00%), Query Frame = 1 
Query:    1 PKVDIPRAGDIVVRGPDWAWGEQDGDAAGRGLVVGLATWG 120
            PKVD+PRAGD+VVRGPDWAWGEQDGD+AGRGLVVGLATWG
Sbjct: 1932 PKVDLPRAGDVVVRGPDWAWGEQDGDSAGRGLVVGLATWG 1971
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BLAST of mRNA_E-fasciculatus_F_contig13640.2701.1 vs. uniprot
Match: X6MXB3_RETFI (MIB/HERC2 domain-containing protein (Fragment) n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6MXB3_RETFI)

HSP 1 Score: 50.1 bits (118), Expect = 4.180e-6
Identity = 19/31 (61.29%), Postives = 23/31 (74.19%), Query Frame = 1 
Query:   25 GDIVVRGPDWAWGEQDGDAAGRGLVVGLATW 117
            GD+VVRGPDW WG+QDG    +G+V GL  W
Sbjct:   94 GDLVVRGPDWKWGDQDGKPGMKGIVRGLRQW 124
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BLAST of mRNA_E-fasciculatus_F_contig13640.2701.1 vs. uniprot
Match: UPI001403D07D (E3 ubiquitin-protein ligase MIB2-like n=1 Tax=Petromyzon marinus TaxID=7757 RepID=UPI001403D07D)

HSP 1 Score: 47.0 bits (110), Expect = 7.980e-5
Identity = 16/29 (55.17%), Postives = 21/29 (72.41%), Query Frame = 1 
Query:   31 IVVRGPDWAWGEQDGDAAGRGLVVGLATW 117
            +V+RGPDW WG QDG   G+GLV+ +  W
Sbjct:  152 VVIRGPDWKWGNQDGGEGGKGLVLTIKGW 180
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BLAST of mRNA_E-fasciculatus_F_contig13640.2701.1 vs. uniprot
Match: S4RTC7_PETMA (RING-type E3 ubiquitin transferase n=1 Tax=Petromyzon marinus TaxID=7757 RepID=S4RTC7_PETMA)

HSP 1 Score: 47.0 bits (110), Expect = 7.990e-5
Identity = 16/29 (55.17%), Postives = 21/29 (72.41%), Query Frame = 1 
Query:   31 IVVRGPDWAWGEQDGDAAGRGLVVGLATW 117
            +V+RGPDW WG QDG   G+GLV+ +  W
Sbjct:  149 VVIRGPDWKWGNQDGGEGGKGLVLTIKGW 177
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13640.2701.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LCZ5_ECTSI1.290e-1995.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KT07_9PHAE3.280e-1992.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
X6MXB3_RETFI4.180e-661.29MIB/HERC2 domain-containing protein (Fragment) n=1... [more]
UPI001403D07D7.980e-555.17E3 ubiquitin-protein ligase MIB2-like n=1 Tax=Petr... [more]
S4RTC7_PETMA7.990e-555.17RING-type E3 ubiquitin transferase n=1 Tax=Petromy... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13640contigE-fasciculatus_F_contig13640:2293..2412 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.5
Seed ortholog evalue1.9e-16
Seed eggNOG ortholog2880.D8LCZ5
KEGG koko:K10614
KEGG Pathwayko04120,map04120
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
EC2.3.2.26
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size120
Cds size120
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927860.7672024-CDS-E-fasciculatus_F_contig13640:2292..24121622927860.7672024-CDS-E-fasciculatus_F_contig13640:2292..2412Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13640 2293..2412 -
1695995727.3304193-CDS-E-fasciculatus_F_contig13640:2292..24121695995727.3304193-CDS-E-fasciculatus_F_contig13640:2292..2412Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13640 2293..2412 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13640.2701.1prot_E-fasciculatus_F_contig13640.2701.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13640 2293..2412 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13640.2701.1

>prot_E-fasciculatus_F_contig13640.2701.1 ID=prot_E-fasciculatus_F_contig13640.2701.1|Name=mRNA_E-fasciculatus_F_contig13640.2701.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=40bp
PKVDIPRAGDIVVRGPDWAWGEQDGDAAGRGLVVGLATWG
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mRNA from alignment at E-fasciculatus_F_contig13640:2293..2412-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13640.2701.1 ID=mRNA_E-fasciculatus_F_contig13640.2701.1|Name=mRNA_E-fasciculatus_F_contig13640.2701.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=120bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13640:2293..2412- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCGAAGGTGGATATCCCGCGCGCCGGAGACATCGTGGTCCGTGGCCCGGA
CTGGGCGTGGGGCGAGCAGGACGGAGACGCCGCTGGGCGCGGGCTCGTGG
TGGGGCTGGCAACGTGGGGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13640:2293..2412-

>mRNA_E-fasciculatus_F_contig13640.2701.1 ID=mRNA_E-fasciculatus_F_contig13640.2701.1|Name=mRNA_E-fasciculatus_F_contig13640.2701.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=240bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13640:2293..2412- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCGAAGGTGGATATCCCGCGCGCCGGAGACATCGTGGTCCGTGGCCCGGA
CTGGGCGTGGGGCGAGCAGGACGGAGACGCCGCTGGGCGCGGGCTCGTGG
TGGGGCTGGCAACGTGGGGCCCGAAGGTGGATATCCCGCGCGCCGGAGAC
ATCGTGGTCCGTGGCCCGGACTGGGCGTGGGGCGAGCAGGACGGAGACGC
CGCTGGGCGCGGGCTCGTGGTGGGGCTGGCAACGTGGGGC
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