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Homology
BLAST of mRNA_E-fasciculatus_F_contig10009.27.1 vs. uniprot
Match: A0A6H5K5V0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5V0_9PHAE) HSP 1 Score: 709 bits (1831), Expect = 1.870e-249 Identity = 368/425 (86.59%), Postives = 386/425 (90.82%), Query Frame = 1
Query: 58 ILSALASLHAQGLFHGHVTPGRILFSSPSRNELGAETAKLCYLEKAHGAGDAWQAGGTPVGAVDKDLRDADIVSLGLTVFAALMGDSGAAAGEPLESYRATTESTGVPELSPLGRQSLHTRKRFLPTREAIDLMLGTDPGMAIPSAVELLQHPWFPSDGAQEEDPMPLPLAPGQTVAVGPPAKPEDIPAGLPPTVPKLGGTGNGLGDSTRSSKKMGLGGSLSRSNS-RDESSLYIDMPDGSKALAAWLSKKTSARKTLAMKHSWQRRWFVLNPSTSMLLIYTHEVDLKASEPEASRRSSGGIPKAFPLDGAQVSPLLRPAVRDNSSSHAFCLVLEDRAERFPSMFLSFKSEKLMNVWLIAFQSVAEVRAAGTRGPGDHSSHADGSRRESTDAGGEGLDWWDDVSHQAQRVAHVTAASAFASGGGE 1329
+LSALASLHAQGLFHGHVTPGRI FSSPS NELGA TAKLCYLEKAHGAGDAWQAGG+PVG VDKDLRDADIVSLGLTVFAALMGDSGAAAGEPLESYRATTESTGVPELSPLGRQ REAIDLMLGTDPG+AIPSAVELLQHPWFPSDGA EE+PMPLPLAPGQTVAVGPPAKPEDIPAGLPPTVPKLGGTGNGLGDS+ S +K+GLGGSLSR++S DESSLYID+PDGSKALAAWL+KKTS RK LAMK SWQRRWFVLNPSTSMLLIYT EVDL ASEPEASRRSSGGIPKAFPLD A V+PL+RP V+DN SSHAFCLVLED+AERFPSM LSFKSEKLM+VWL+AFQSVAEVRAAGTRG G+HSS DG R S DAGGEGL WWDDVSHQAQRVAHVTAASAFA GGGE
Sbjct: 123 VLSALASLHAQGLFHGHVTPGRIFFSSPSHNELGAATAKLCYLEKAHGAGDAWQAGGSPVGTVDKDLRDADIVSLGLTVFAALMGDSGAAAGEPLESYRATTESTGVPELSPLGRQP----------REAIDLMLGTDPGVAIPSAVELLQHPWFPSDGAHEEEPMPLPLAPGQTVAVGPPAKPEDIPAGLPPTVPKLGGTGNGLGDSSGSLQKVGLGGSLSRASSGTDESSLYIDLPDGSKALAAWLAKKTSGRKALAMKSSWQRRWFVLNPSTSMLLIYTREVDLTASEPEASRRSSGGIPKAFPLDSAHVAPLIRPGVKDNLSSHAFCLVLEDKAERFPSMLLSFKSEKLMHVWLVAFQSVAEVRAAGTRGTGEHSSRGDGMERGSADAGGEGLGWWDDVSHQAQRVAHVTAASAFACGGGE 537
BLAST of mRNA_E-fasciculatus_F_contig10009.27.1 vs. uniprot
Match: D7FQQ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQQ4_ECTSI) HSP 1 Score: 569 bits (1466), Expect = 7.030e-197 Identity = 302/348 (86.78%), Postives = 313/348 (89.94%), Query Frame = 1
Query: 289 TVFAALMGDSGAAAGEPLESYRATTESTGVPELSPLGRQSLHTRKRFLPTREAIDLMLGTDPGMAIPSAVELLQHPWFPSDGAQEEDPMPLPLAPGQTVAVGPPAKPEDIPAGLPPTVPKLGGTGNGLGDSTRSSKKMGLGGSLSR-SNSRDESSLYIDMPDGSKALAAWLSKKTSARKTLAMKHSWQRRWFVLNPSTSMLLIYTHEVDLKASEPEASRRSSGGIPKAFPLDGAQVSPLLRPAVRDNSSSHAFCLVLEDRAERFPSMFLSFKSEKLMNVWLIAFQSVAEVRAAGTRGPGDHSSHADGSRRESTDAGGEGLDWWDDVSHQAQRVAHVTAASAFASGGGE 1329
T +ALMGDSGAAAGEPLESYRATTESTGVPELSPLGR EAIDLMLGTDPGMAIPSAVELLQHPWFPSDGA+EE+PMPLPLAPGQTVAVGPPAKPEDIPAGLPPTVPKLGGTGNGLGDS+ S KK+GLGGSLSR S+S DESSLYIDMPDGSKALAAWL+KKTS RKTLAMK SWQRRWFVLNPSTSMLLIYT EVDL ASEPEASRRSSGGIPKAFPLD A VSPL+RP VRDNSSSHAFCLVLED AERFPSMFLSFKSEKLM+VWLIAFQSVAEVRAAGTRG G+HSSHADG + S DA GEGL WWDDVSHQAQRVAHVTAASAFA GGGE
Sbjct: 14 TRISALMGDSGAAAGEPLESYRATTESTGVPELSPLGR-------------EAIDLMLGTDPGMAIPSAVELLQHPWFPSDGAEEEEPMPLPLAPGQTVAVGPPAKPEDIPAGLPPTVPKLGGTGNGLGDSSGSLKKVGLGGSLSRASSSTDESSLYIDMPDGSKALAAWLAKKTSGRKTLAMKSSWQRRWFVLNPSTSMLLIYTREVDLTASEPEASRRSSGGIPKAFPLDSAHVSPLIRPGVRDNSSSHAFCLVLEDEAERFPSMFLSFKSEKLMHVWLIAFQSVAEVRAAGTRGTGNHSSHADGMGKGSADAVGEGLGWWDDVSHQAQRVAHVTAASAFACGGGE 348
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Peptidase C19, ubiquitin-specific peptidase, DUSP domain |
| Ec32 ortholog | Ec-01_000120.1 |
| Exons | 6 |
| Model size | 1329 |
| Cds size | 1329 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10009.27.1 >prot_E-fasciculatus_F_contig10009.27.1 ID=prot_E-fasciculatus_F_contig10009.27.1|Name=mRNA_E-fasciculatus_F_contig10009.27.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=443bp
PPTAATTSRIYTIRDLSNSILSALASLHAQGLFHGHVTPGRILFSSPSRN ELGAETAKLCYLEKAHGAGDAWQAGGTPVGAVDKDLRDADIVSLGLTVFA ALMGDSGAAAGEPLESYRATTESTGVPELSPLGRQSLHTRKRFLPTREAI DLMLGTDPGMAIPSAVELLQHPWFPSDGAQEEDPMPLPLAPGQTVAVGPP AKPEDIPAGLPPTVPKLGGTGNGLGDSTRSSKKMGLGGSLSRSNSRDESS LYIDMPDGSKALAAWLSKKTSARKTLAMKHSWQRRWFVLNPSTSMLLIYT HEVDLKASEPEASRRSSGGIPKAFPLDGAQVSPLLRPAVRDNSSSHAFCL VLEDRAERFPSMFLSFKSEKLMNVWLIAFQSVAEVRAAGTRGPGDHSSHA DGSRRESTDAGGEGLDWWDDVSHQAQRVAHVTAASAFASGGGE back to topmRNA from alignment at E-fasciculatus_F_contig10009:984..5010+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig10009.27.1 ID=mRNA_E-fasciculatus_F_contig10009.27.1|Name=mRNA_E-fasciculatus_F_contig10009.27.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4027bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10009:984..5010+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) CCCCCCACTGCCGCCACGACGTCGCGAATATACACTATACGTGACCTCTC
GAACAGCATCCTCTCAGCGCTAGCCTCGCTGCACGCTCAAGGGCTGTTCC
ACGGACACGTCACCCCGGGGAGGATACTCTTCTCGTCCCCTAGCCGCAAC
GAGCTAGGGGCTGAGACGGCAAAGCTGTGCTACTTGGAGAAGGCGCACGG
GGCCGGCGATGCTTGGCAAGCGGGCGGGACTCCTGTGGGCGCGGTGGACA
AGGACCTCAGGTGAAGTACAAGGCAGCAATTGGCATGCGTGCGTGTGTGT
TTCTTTGCTTGTCAAGGGTTACAATAGGGTTGGGGGCAGCGAAAACCGGC
TGAAAATGAAGACGTCTGTCCGTCTAGCACAACACAGCGGGGTACAGGAA
GGCGAACGAACACGCTGACATGATCGTTCGTGGTGTGGACTTGGCCAGCA
GCATTTCAGAATTTTCTTGGCCACCTCCAGTAGTAGTAGAAGTGGCGTCT
GCGTCTGACAGGTATATAGTAGAGCCTGGTAAAACGCCGCGACGACCAGT
ATATAGTAGAAAGTTGAACGGAAAACGGGTTTGCCGGAAGATGCTAGATG
CTAGATGCTTGCTGATAGATGATAGATGATAGATGCGATGGGCATACTCA
TGACTGGGACTCATGCATGCCTGCCTTACTGTATGCATGCCTCAATCTCG
CCATCTTGCGCGATCGTTTGTATTGTGTGTTTTTTCTGCAAGGGATGCGG
ACATAGTGTCCTTGGGCCTGACCGTGTTCGCGGCTCTGATGGGGGATTCC
GGGGCGGCGGCGGGCGAGCCTTTGGAGAGCTATCGCGCGACTACGGAGAG
CACGGGGGTGCCCGAGCTGTCTCCCCTTGGCAGGCAAGTAAAATAGATAC
CCTACCGCCTGTTGTGGTGTGTTGCTGAATAGACACATCTCATGGCTCTC
GCCGGTACGGTCGACATTAGGGCAGGCAAAAAGGGTTGATCATTTTGCGT
CGCCCCCTTCTTCAGCAGCAGCCCAAGTCTTACGTATCCGGTGTAAGGAG
GGGCAGACTAAGGTGGAAAACAATCTCGTGCAATGATATGATTCGTGTCG
CCTGGAACGAGGTAAGGTACCTAGCCAAGCTTTGCAACAACCTGTCCGGC
ATGCGTATCTCGTGGTGGCGACCGAGACGCTGTACTTGTTGCTGCCCCCC
CCACCCCCGCCCACGGGTGCATTCCGGACAGTGCGCTGGCGGAGGCGCTT
GGCTGTAAGAAAACAACCGGCTATTTTCCCTCTGCACGAAAGGCGTTTAG
GTTAGACTCTGCGCGAGGATAAATTGAAAAGAGCTTACACACGCGTAAAC
GCTTTTTGCCCACCAGGGAAGCTATCGACCTGATGCTGGGCACGGACCCC
GGGATGGCGATCCCTTCCGCAGTGGAACTCCTCCAGCACCCCTGGTTCCC
CTCGGACGGAGCGCAAGAGGAGGACCCCATGCCCCTGCCTCTCGCGCCCG
GGCAAACGGTGGCCGTAGGCCCCCCCGCGAAGCCGGAGGACATACCCGCG
GGCCTCCCGCCTACGGTGCCCAAGCTGGGGGGTACGGGCAATGGGCTGGG
TGATTCCACGCGGAGCTCGAAGAAGATGGGGCTGGGGGGGTCGCTATCAC
GTTCGAACTCCAGGGACGAGTCGTCGCTGTATATCGACATGCCGGACGGG
AGCAAGGCCTTGGCCGCTTGGCTGTCCAAGAAGACGAGCGCGAGGAAGAC
GCTGGCGATGAAGCACTCATGGTGAGTGGTGTGAGTGCTGAGCGACGATA
CAATAGCCGAGCCGTCCCGACTCTGCAAGCGAATGTCGCCGCACGACACT
GCAAGAATTGGTTGTTGCCCCGACATTTGCGTAGGAAGGGTGCCAGCACT
CCGGCGGCAGACGCTGATTTGGTGGCGTAAAGATATAACGATCCTTCAAC
TGACCAGCCGTGGGTACTGTATTTCATGACTGCCTCGGTGGCGTCCCTGT
GGTGGCGCCGCGGCCCATAGCCTGGTGTCGGTGCGAGGGGGGCTCTCTGT
TTCGAGTGCGGTCCCACTGTCCGCTACAGTAGGCTTGACGTGGTGCACCA
CACACTTGCTTCAAATCGTTGCCTGCACTTTTTGTAGCTGCTCAACGTGC
CGCATGGTATGCATACTAATGTTCGTTCTGCTGTCGCACGCACGCACACA
CACCACCCTTCCTTTTCCCGGAATACAACAGGCAACGGCGGTGGTTTGTC
CTCAACCCGTCGACTTCGATGCTGCTCATCTACACGCATGAAGTAGACCT
GAAAGCATCCGAGCCTGAGGCAAGCAGGCGCTCCTCCGGCGGCATCCCCA
AGGCCTTCCCTCTCGACGGTGCACAAGTGAGTCAGTCTTCCTGTCTTCCT
GCCTTGTTGTCCCTCATGTTCCGGCGGATCAGCCTGGCTATTTGGTTGTG
TGATAGTGTGATAGTGTGATAGTGTGAGTTGTACCACCGTTCACTGGCAG
GTGTCTAACCCGCGAGTGCGTAGCAGCTCAGGAGTGTAAAGATATAGATA
AGCGCGTCGTGCTTGCTATCTGGAAGGCCCGTGAGAAGAAGTCACTTACT
ATTTATGTTAAGTCTTGTTGGGGCAGCAGCTGTTGCTGTTGCCTCGATAC
TCGATACTCGATACTCGATAGGAATGAATCGCAAAGGTGGGAGGCGGATA
CGCCGCCTCAAGCGGGGCTACTATACAGATCCTGTTCCCTGTTTTATCCT
TCCTCGGGGAGTTGCATCTCCCCGAACCTTCTATGAGGAGCCATTCTCTT
CTAAGGGCCGTGTACTCATCTAAATCATACCTTACCCCACCAGCCCACCC
TGGAGGTTCTCAAACGCAGGTTCTAATAAACCTCGGCGCTTGACAAGAAT
TGTCGAATCCCAAAAATGAAAGTATCGAGAAGGCGGGGCTCCAAAACAAC
GTAATTCACCGTCCCACACCTCTCACTCGATGGGTCGCAAGACCATTGTT
TGACCTCCAAAAGAAGGCACAGGATGAGGGGTTTTTTGGTGCTTGGGTGC
TGCTGGACGTGTACGTGTCTTGGTTCGAAAAAAGGCGAAAAGGCGAAAAG
GCGAAAAGGAGGCGGTCACTCTTCCGGTGCCGGTGAAGTGACGTCATGGT
CATGGTGGGATGGACCGCCGCACCTTTCCGCAAAGAGCATGTCGTATGTC
GTACAGCTGTAGACTATTGTATTGGATTGGCGTGGTGTCATTTTCATTTT
GTACGCTCATCTGTGTTCCCCTCAACACAACACAACACAACACGGCAGGT
CTCGCCCTTGCTACGGCCGGCAGTCAGGGATAACTCGTCGTCTCACGCCT
TTTGCTTGGTGCTGGAGGATAGGGCGGAGCGCTTCCCTTCCATGTTCCTG
TCCTTCAAGTCCGAAAAGGTGCGGGGCATGCGCCACTGTACATGAAACGT
CTTCTTCTTGTCCCCCTCGGCTAGTGCTACTAATGAAACAAGATACGCGT
ATTGTAAAATAGCTGTAAACGTCTTTGCCAGTGTGTGTACGAGGAACAGT
TTCTTGCCGCGGGGGGGGATCTGTCTGGCCTTGTGGTTGCTCACGGCATC
AATAGTGGCCTTGTTGCGTACCCACGGCGCCACTCCTTACAACGGCCTGC
TGACGGACGGTCGGCGATTTTTCCGGCCTTGACCGACGTTTATCTCGTGT
GCCGCCTGGTTCTCCCCTCCCTCCCTCCCCCCGCCACGCTACCCTCTCTC
CTCTGGCGACCATTGAACGGATGTGCGGATGCCTGCCGCAATATCCGTGC
AACATCAGCTCATGAACGTGTGGCTCATCGCCTTCCAGTCGGTGGCGGAG
GTTAGAGCTGCAGGAACGCGCGGCCCCGGGGACCATTCAAGCCATGCGGA
CGGTAGTCGGAGGGAGAGTACGGACGCGGGCGGAGAAGGGTTGGACTGGT
GGGATGACGTCAGCCACCAGGCGCAGAGGGTGGCTCATGTAACGGCGGCT
TCTGCATTCGCGTCGGGGGGGGGGGAG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig10009:984..5010+ >mRNA_E-fasciculatus_F_contig10009.27.1 ID=mRNA_E-fasciculatus_F_contig10009.27.1|Name=mRNA_E-fasciculatus_F_contig10009.27.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2658bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10009:984..5010+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) CCCCCCACTGCCGCCACGACGTCGCGAATATACACTATACGTGACCTCTC GAACAGCATCCTCTCAGCGCTAGCCTCGCTGCACGCTCAAGGGCTGTTCC ACGGACACGTCACCCCGGGGAGGATACTCTTCTCGTCCCCTAGCCGCAAC GAGCTAGGGGCTGAGACGGCAAAGCTGTGCTACTTGGAGAAGGCGCACGG GGCCGGCGATGCTTGGCAAGCGGGCGGGACTCCTGTGGGCGCGGTGGACA AGGACCTCAGCCCCCCACTGCCGCCACGACGTCGCGAATATACACTATAC GTGACCTCTCGAACAGCATCCTCTCAGCGCTAGCCTCGCTGCACGCTCAA GGGCTGTTCCACGGACACGTCACCCCGGGGAGGATACTCTTCTCGTCCCC TAGCCGCAACGAGCTAGGGGCTGAGACGGCAAAGCTGTGCTACTTGGAGA AGGCGCACGGGGCCGGCGATGCTTGGCAAGCGGGCGGGACTCCTGTGGGC GCGGTGGACAAGGACCTCAGGGATGCGGACATAGTGTCCTTGGGCCTGAC CGTGTTCGCGGCTCTGATGGGGGATTCCGGGGCGGCGGCGGGCGAGCCTT TGGAGAGCTATCGCGCGACTACGGAGAGCACGGGGGTGCCCGAGCTGTCT CCCCTTGGCAGGCAAGGATGCGGACATAGTGTCCTTGGGCCTGACCGTGT TCGCGGCTCTGATGGGGGATTCCGGGGCGGCGGCGGGCGAGCCTTTGGAG AGCTATCGCGCGACTACGGAGAGCACGGGGGTGCCCGAGCTGTCTCCCCT TGGCAGGCAAAGCTTACACACGCGTAAACGCTTTTTGCCCACCAGGGAAG CTATCGACCTGATGCTGGGCACGGACCCCGGGATGGCGATCCCTTCCGCA GTGGAACTCCTCCAGCACCCCTGGTTCCCCTCGGACGGAGCGCAAGAGGA GGACCCCATGCCCCTGCCTCTCGCGCCCGGGCAAACGGTGGCCGTAGGCC CCCCCGCGAAGCCGGAGGACATACCCGCGGGCCTCCCGCCTACGGTGCCC AAGCTGGGGGGTACGGGCAATGGGCTGGGTGATTCCACGCGGAGCTCGAA GAAGATGGGGCTGGGGGGGTCGCTATCACGTTCGAACTCCAGGGACGAGT CGTCGCTGTATATCGACATGCCGGACGGGAGCAAGGCCTTGGCCGCTTGG CTGTCCAAGAAGACGAGCGCGAGGAAGACGCTGGCGATGAAGCACTCATG AGCTTACACACGCGTAAACGCTTTTTGCCCACCAGGGAAGCTATCGACCT GATGCTGGGCACGGACCCCGGGATGGCGATCCCTTCCGCAGTGGAACTCC TCCAGCACCCCTGGTTCCCCTCGGACGGAGCGCAAGAGGAGGACCCCATG CCCCTGCCTCTCGCGCCCGGGCAAACGGTGGCCGTAGGCCCCCCCGCGAA GCCGGAGGACATACCCGCGGGCCTCCCGCCTACGGTGCCCAAGCTGGGGG GTACGGGCAATGGGCTGGGTGATTCCACGCGGAGCTCGAAGAAGATGGGG CTGGGGGGGTCGCTATCACGTTCGAACTCCAGGGACGAGTCGTCGCTGTA TATCGACATGCCGGACGGGAGCAAGGCCTTGGCCGCTTGGCTGTCCAAGA AGACGAGCGCGAGGAAGACGCTGGCGATGAAGCACTCATGGCAACGGCGG TGGTTTGTCCTCAACCCGTCGACTTCGATGCTGCTCATCTACACGCATGA AGTAGACCTGAAAGCATCCGAGCCTGAGGCAAGCAGGCGCTCCTCCGGCG GCATCCCCAAGGCCTTCCCTCTCGACGGTGCACAAGCAACGGCGGTGGTT TGTCCTCAACCCGTCGACTTCGATGCTGCTCATCTACACGCATGAAGTAG ACCTGAAAGCATCCGAGCCTGAGGCAAGCAGGCGCTCCTCCGGCGGCATC CCCAAGGCCTTCCCTCTCGACGGTGCACAAGTCTCGCCCTTGCTACGGCC GGCAGTCAGGGATAACTCGTCGTCTCACGCCTTTTGCTTGGTGCTGGAGG ATAGGGCGGAGCGCTTCCCTTCCATGTTCCTGTCCTTCAAGTCCGAAAAG GTCTCGCCCTTGCTACGGCCGGCAGTCAGGGATAACTCGTCGTCTCACGC CTTTTGCTTGGTGCTGGAGGATAGGGCGGAGCGCTTCCCTTCCATGTTCC TGTCCTTCAAGTCCGAAAAGCTCATGAACGTGTGGCTCATCGCCTTCCAG TCGGTGGCGGAGGTTAGAGCTGCAGGAACGCGCGGCCCCGGGGACCATTC AAGCCATGCGGACGGTAGTCGGAGGGAGAGTACGGACGCGGGCGGAGAAG GGTTGGACTGGTGGGATGACGTCAGCCACCAGGCGCAGAGGGTGGCTCAT GTAACGGCGGCTTCTGCATTCGCGTCGGGGGGGGGGGAGCTCATGAACGT GTGGCTCATCGCCTTCCAGTCGGTGGCGGAGGTTAGAGCTGCAGGAACGC GCGGCCCCGGGGACCATTCAAGCCATGCGGACGGTAGTCGGAGGGAGAGT ACGGACGCGGGCGGAGAAGGGTTGGACTGGTGGGATGACGTCAGCCACCA GGCGCAGAGGGTGGCTCATGTAACGGCGGCTTCTGCATTCGCGTCGGGGG GGGGGGAG back to top
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