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Homology
BLAST of mRNA_E-fasciculatus_F_contig13639.2698.1 vs. uniprot
Match: D8LL20_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL20_ECTSI) HSP 1 Score: 482 bits (1241), Expect = 3.880e-162 Identity = 267/294 (90.82%), Postives = 272/294 (92.52%), Query Frame = 1
Query: 16 KQVLPIPDGPSVSPPVALAHSHCPGWQRFTIWIAKKDGSVGALCPVVPQTAKVDSEELVGLWSSTCDTLVAARWEQEHQSGADSQQQSALDQEVARLEQQKGWLRETFSHVFDGQDKDG--------GALVARTPRHLVLQDRILAGRAGENAGAACGLAVLQGVGGXXXXXXXXXXXXXXXVVLAVAYREGWVDIALVPEGVSPRWSERAGQRVSCAV----GGGGETSGAVLESLDLAERVEDKTARRRQGLSLSTGGSGSWTLLAATPCRVASITVTWAGRIQRAAERARE 861
+QVLPIPDGP+VSPPVALAHSHCPGWQRFTIWIAKKDGSVGALCPVVPQTAKVDSEELVGLWS+TCDTLVAARWEQ HQSG DSQQQSALD+EVARLEQQKGWLRETFSHVF GQD DG GALVARTPRHLVLQDRILAGR GENAGAACGLAVLQGVGGXXXXXXXXXXXXXXXVVLAVAYREGWVDIALVP GVSPRWSERAGQRVSCA G GGETSGAVLESLDLAERVEDKTARRRQGLSLS GGS SWTLLAATPCRVAS+TVTWAGRIQRAAERARE
Sbjct: 263 EQVLPIPDGPNVSPPVALAHSHCPGWQRFTIWIAKKDGSVGALCPVVPQTAKVDSEELVGLWSATCDTLVAARWEQAHQSGTDSQQQSALDEEVARLEQQKGWLRETFSHVFYGQDNDGTAAAVPAGGALVARTPRHLVLQDRILAGRTGENAGAACGLAVLQGVGGXXXXXXXXXXXXXXXVVLAVAYREGWVDIALVPAGVSPRWSERAGQRVSCAAAAAGGSGGETSGAVLESLDLAERVEDKTARRRQGLSLSAGGSASWTLLAATPCRVASVTVTWAGRIQRAAERARE 556
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 861 |
| Cds size | 861 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig13639.2698.1 >prot_E-fasciculatus_F_contig13639.2698.1 ID=prot_E-fasciculatus_F_contig13639.2698.1|Name=mRNA_E-fasciculatus_F_contig13639.2698.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=287bp
MYVCTKQVLPIPDGPSVSPPVALAHSHCPGWQRFTIWIAKKDGSVGALCP
VVPQTAKVDSEELVGLWSSTCDTLVAARWEQEHQSGADSQQQSALDQEVA
RLEQQKGWLRETFSHVFDGQDKDGGALVARTPRHLVLQDRILAGRAGENA
GAACGLAVLQGVGGGAGGDAAEAAAAPPPVVLAVAYREGWVDIALVPEGV
SPRWSERAGQRVSCAVGGGGETSGAVLESLDLAERVEDKTARRRQGLSLS
TGGSGSWTLLAATPCRVASITVTWAGRIQRAAERARE back to topmRNA from alignment at E-fasciculatus_F_contig13639:1007..3348- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig13639.2698.1 ID=mRNA_E-fasciculatus_F_contig13639.2698.1|Name=mRNA_E-fasciculatus_F_contig13639.2698.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2342bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13639:1007..3348- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTACGTATGTACGAAACAGGTATTGCCGATCCCCGATGGGCCGAGCGT
GTCTCCGCCTGTCGCGCTGGCCCACAGCCACTGCCCCGGGTGGCAGCGCT
TCACCATTTGGATCGCGAAGAAGGATGGTTCGGTTGGCGCCCTGTGCCCT
GTGGTGCCGCAAACCGCAAAGGTCGATAGCGAGGAACTGGTGAGCTAAGG
CAACGGGGGTTGGAAACATAAGGGAGTGGTTGCTTGCTGTGTTGCGTCTC
TGTTGTACCCGGAGGTTTGGGGTTGGCCTGCGACAATTGCAAGCAAACTC
TTCCCCTGTAGAGTACTTGGTATAATAGTAGAAGGCATTGGAGATAAAAA
ATTTCATGGTGAGGGCAGTAATAACAACAGCGACGGCAGCGACGACGATG
ACAAGCAAATGTTGACATTGACGGCACCACTATTGCTTTTTGCGGCCATG
TCGTGGATGAACACGAGGGTGGGCGGCTACCCAATTGAAACCGCTAACCC
TAAAAAACCCAACCGTTCCCTCGTCTGCCCATACTATTCTAGCGTTTTTT
TGTTCGTGTAGTCTGCAGGGCGTGTCCTCACCGCTCTTTGTTAGGGGCGC
CCGGCGTGACATAAGTTCCGTCTCCTCTTGATGTGGCACAAGTCTTGGTC
CTGTGCGGTGCATGACGAAAAGCCTCTACCCGAAACTTGGCGTTATTTGA
TTTGATCGCTGTGTCCATAAGGTCGGGCTGTGGTCGTCCACGTGTGACAC
TTTGGTAGCTGCGCGATGGGAACAAGAGCATCAAAGCGGGGCGGACAGTC
AGGTACGGACTGCTGGTGTTGCTGGGACAGCAGGCTGGAAACTGAGGGGC
CGTGGGCGTACTGACGCGGCTCCGCCGCTCTTTCATCTCTCGTCGCACCC
GTTAAATGCCACGTTTTTTTTGCTGTACATGTCGTGGCTGAAAGAAAGCG
TCGCCCTCTCGGTCTCGGGGCTAGTACACGTTTCACCACCCCCACACGTC
GTAGACACCGTCACCCCTGAGCGATTAAACACCCGTCCCTTGGCGTTTAA
ATGCCGCGCCAGCAACAGAGCGCTCTGGACCAAGAGGTGGCACGGCTGGA
GCAGCAGAAGGGGTGGCTCAGAGAAACGTTCAGCCACGTGTTCGATGGAC
AGGTGAAGCTTAACCAGAGAGGAAGGGAAGGGTTAGGAGCCACGAACGCA
AGGGTGCGGTTAGGGGCATAATGTCGAAAGCATGTGCGGCAGGATGAAGG
CAGGGGCGAGCGGTGGGGGCGGAGGAGCAACGGGACCTCTGCGTGGACCT
TGCTTGCGCTGTGATCGCCACCCAACCAAAATGTTTGCAATCGGATGAGA
TGAAACTAAAACGAGTGTATGCTGTTCTAAGTCAAACATCTCGCGACGTC
GCCGTGCCACGCCTATTTATGTCTTTTCTTATCTTGCAATGCGACCGATC
GACCAACCCGTTCCTGCCCCCCCAACACTTGGCCCTTATCGAACCTACCC
CCCGCCATCGCAGGACAAGGACGGGGGAGCGTTGGTAGCTCGAACCCCTC
GCCACCTCGTGCTCCAGGACCGCATCCTAGCCGGGAGGGCCGGGGAGAAT
GCCGGCGCGGCGTGCGGCTTGGCGGTGCTCCAAGGAGTGGGCGGGGGAGC
GGGGGGGGATGCCGCGGAGGCGGCGGCCGCCCCGCCGCCGGTGGTGCTGG
CGGTGGCGTACAGGGAGGGGTGGGTGGACATCGCACTGGTGCCCGAGGGC
GTCAGTCCCAGGTGGGTGCTTAAGAACGCATAGCTTTTATGCTGCTGCCG
TTGTGGTCTTGTCGGTATGTACTTTTGTACATTCCGCTAGTCGGAGTTAA
ACACCCGGTGCGTGTTAATTAGATGTGTCGAAGTAGCTTGCTGTTACGTC
AGCTGTTCCTATCGTCATCGGTAGGTACCACCTCCCGCCACGAGGCGTGC
GTTTCACCGCCCCGCCCGCTTCCCCCTCCTCTCAAAACTCCCGAGGCAAA
CTCATCCCGGCTCCTCTTGCCCACCAAAGCAACGACAATCAAAATGACTT
ACTTGAATCGACCTGACTACGTCACATGTACCACCACAGGTGGTCCGAAC
GCGCCGGCCAGCGCGTCTCGTGCGCGGTGGGGGGAGGGGGGGAGACCTCG
GGGGCCGTCCTGGAGAGCCTGGACCTGGCGGAGCGCGTGGAGGACAAGAC
CGCCAGGAGGAGGCAAGGGCTGTCGCTCTCGACGGGGGGGTCGGGGTCGT
GGACGCTCCTGGCCGCCACGCCGTGCAGGGTGGCCTCTATCACGGTGACG
TGGGCGGGTCGTATCCAGAGGGCGGCGGAGCGCGCGAGGGAG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig13639:1007..3348- >mRNA_E-fasciculatus_F_contig13639.2698.1 ID=mRNA_E-fasciculatus_F_contig13639.2698.1|Name=mRNA_E-fasciculatus_F_contig13639.2698.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1722bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13639:1007..3348- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTACGTATGTACGAAACAGGTATTGCCGATCCCCGATGGGCCGAGCGT
GTCTCCGCCTGTCGCGCTGGCCCACAGCCACTGCCCCGGGTGGCAGCGCT
TCACCATTTGGATCGCGAAGAAGGATGGTTCGGTTGGCGCCCTGTGCCCT
GTGGTGCCGCAAACCGCAAAGGTCGATAGCGAGGAACTGATGTACGTATG
TACGAAACAGGTATTGCCGATCCCCGATGGGCCGAGCGTGTCTCCGCCTG
TCGCGCTGGCCCACAGCCACTGCCCCGGGTGGCAGCGCTTCACCATTTGG
ATCGCGAAGAAGGATGGTTCGGTTGGCGCCCTGTGCCCTGTGGTGCCGCA
AACCGCAAAGGTCGATAGCGAGGAACTGGTCGGGCTGTGGTCGTCCACGT
GTGACACTTTGGTAGCTGCGCGATGGGAACAAGAGCATCAAAGCGGGGCG
GACAGTCAGGTCGGGCTGTGGTCGTCCACGTGTGACACTTTGGTAGCTGC
GCGATGGGAACAAGAGCATCAAAGCGGGGCGGACAGTCAGCAACAGAGCG
CTCTGGACCAAGAGGTGGCACGGCTGGAGCAGCAGAAGGGGTGGCTCAGA
GAAACGTTCAGCCACGTGTTCGATGGACAGCAACAGAGCGCTCTGGACCA
AGAGGTGGCACGGCTGGAGCAGCAGAAGGGGTGGCTCAGAGAAACGTTCA
GCCACGTGTTCGATGGACAGGACAAGGACGGGGGAGCGTTGGTAGCTCGA
ACCCCTCGCCACCTCGTGCTCCAGGACCGCATCCTAGCCGGGAGGGCCGG
GGAGAATGCCGGCGCGGCGTGCGGCTTGGCGGTGCTCCAAGGAGTGGGCG
GGGGAGCGGGGGGGGATGCCGCGGAGGCGGCGGCCGCCCCGCCGCCGGTG
GTGCTGGCGGTGGCGTACAGGGAGGGGTGGGTGGACATCGCACTGGTGCC
CGAGGGCGTCAGTCCCAGGACAAGGACGGGGGAGCGTTGGTAGCTCGAAC
CCCTCGCCACCTCGTGCTCCAGGACCGCATCCTAGCCGGGAGGGCCGGGG
AGAATGCCGGCGCGGCGTGCGGCTTGGCGGTGCTCCAAGGAGTGGGCGGG
GGAGCGGGGGGGGATGCCGCGGAGGCGGCGGCCGCCCCGCCGCCGGTGGT
GCTGGCGGTGGCGTACAGGGAGGGGTGGGTGGACATCGCACTGGTGCCCG
AGGGCGTCAGTCCCAGGTGGTCCGAACGCGCCGGCCAGCGCGTCTCGTGC
GCGGTGGGGGGAGGGGGGGAGACCTCGGGGGCCGTCCTGGAGAGCCTGGA
CCTGGCGGAGCGCGTGGAGGACAAGACCGCCAGGAGGAGGCAAGGGCTGT
CGCTCTCGACGGGGGGGTCGGGGTCGTGGACGCTCCTGGCCGCCACGCCG
TGCAGGGTGGCCTCTATCACGGTGACGTGGGCGGGTCGTATCCAGAGGGC
GGCGGAGCGCGCGAGGGAGGTGGTCCGAACGCGCCGGCCAGCGCGTCTCG
TGCGCGGTGGGGGGAGGGGGGGAGACCTCGGGGGCCGTCCTGGAGAGCCT
GGACCTGGCGGAGCGCGTGGAGGACAAGACCGCCAGGAGGAGGCAAGGGC
TGTCGCTCTCGACGGGGGGGTCGGGGTCGTGGACGCTCCTGGCCGCCACG
CCGTGCAGGGTGGCCTCTATCACGGTGACGTGGGCGGGTCGTATCCAGAG
GGCGGCGGAGCGCGCGAGGGAG back to top
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