mRNA_E-fasciculatus_F_contig13638.2696.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13638.2696.1
Unique NamemRNA_E-fasciculatus_F_contig13638.2696.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13638.2696.1 vs. uniprot
Match: A0A6H5KMH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMH1_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 3.400e-21
Identity = 63/103 (61.17%), Postives = 69/103 (66.99%), Query Frame = 1 
Query:    4 RASGQQQQPNGIIGHEAAGRPASGGSSVSSGVGEWGDSRHEAAGHWSVDHGHHPGHVGVGDGDGPRLLRGSGRGE---FPVGYPFH-EKRMRVSGGERHAHML 300
            RA   QQQP    G + AGRP S GSSVSSG+GEWGDSRH+AAG W VD  HHPG +GV  GDGPRL   + R     FP GYPFH EK MRV GG   AHM+
Sbjct:  181 RAGRHQQQPQHPEGVDLAGRPNSVGSSVSSGMGEWGDSRHDAAGDWPVDQ-HHPGSIGVA-GDGPRLRHTANRDSTRNFPAGYPFHGEKEMRVGGGP--AHMM 279
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13638.2696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KMH1_9PHAE3.400e-2161.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13638contigE-fasciculatus_F_contig13638:1614..1958 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size346
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927860.1212673-CDS-E-fasciculatus_F_contig13638:1613..19581622927860.1212673-CDS-E-fasciculatus_F_contig13638:1613..1958Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13638 1614..1958 +
1695995726.9931812-CDS-E-fasciculatus_F_contig13638:1613..19581695995726.9931812-CDS-E-fasciculatus_F_contig13638:1613..1958Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13638 1614..1958 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13638.2696.1prot_E-fasciculatus_F_contig13638.2696.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13638 1614..1958 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13638.2696.1

>prot_E-fasciculatus_F_contig13638.2696.1 ID=prot_E-fasciculatus_F_contig13638.2696.1|Name=mRNA_E-fasciculatus_F_contig13638.2696.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=115bp
SRASGQQQQPNGIIGHEAAGRPASGGSSVSSGVGEWGDSRHEAAGHWSVD
HGHHPGHVGVGDGDGPRLLRGSGRGEFPVGYPFHEKRMRVSGGERHAHML
RGEEAAAHHELPRHF
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mRNA from alignment at E-fasciculatus_F_contig13638:1614..1958+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13638.2696.1 ID=mRNA_E-fasciculatus_F_contig13638.2696.1|Name=mRNA_E-fasciculatus_F_contig13638.2696.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=345bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13638:1614..1958+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGCCGTGCAAGCGGGCAGCAGCAGCAACCCAACGGCATCATCGGCCATGA
GGCCGCCGGTCGACCGGCCTCCGGGGGTTCGTCGGTTTCATCCGGGGTCG
GAGAGTGGGGCGATTCGCGACACGAGGCGGCCGGCCATTGGTCAGTGGAT
CATGGTCATCACCCTGGCCACGTAGGCGTAGGCGATGGCGATGGCCCTCG
TCTTCTTCGCGGCAGCGGCCGGGGGGAATTCCCCGTCGGTTACCCGTTCC
ACGAGAAGAGGATGCGGGTCAGCGGCGGGGAGAGACACGCCCACATGCTG
AGAGGCGAAGAAGCTGCGGCGCATCATGAGCTACCGCGTCATTTC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13638:1614..1958+

>mRNA_E-fasciculatus_F_contig13638.2696.1 ID=mRNA_E-fasciculatus_F_contig13638.2696.1|Name=mRNA_E-fasciculatus_F_contig13638.2696.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=690bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13638:1614..1958+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGCCGTGCAAGCGGGCAGCAGCAGCAACCCAACGGCATCATCGGCCATGA
GGCCGCCGGTCGACCGGCCTCCGGGGGTTCGTCGGTTTCATCCGGGGTCG
GAGAGTGGGGCGATTCGCGACACGAGGCGGCCGGCCATTGGTCAGTGGAT
CATGGTCATCACCCTGGCCACGTAGGCGTAGGCGATGGCGATGGCCCTCG
TCTTCTTCGCGGCAGCGGCCGGGGGGAATTCCCCGTCGGTTACCCGTTCC
ACGAGAAGAGGATGCGGGTCAGCGGCGGGGAGAGACACGCCCACATGCTG
AGAGGCGAAGAAGCTGCGGCGCATCATGAGCTACCGCGTCATTTCAGCCG
TGCAAGCGGGCAGCAGCAGCAACCCAACGGCATCATCGGCCATGAGGCCG
CCGGTCGACCGGCCTCCGGGGGTTCGTCGGTTTCATCCGGGGTCGGAGAG
TGGGGCGATTCGCGACACGAGGCGGCCGGCCATTGGTCAGTGGATCATGG
TCATCACCCTGGCCACGTAGGCGTAGGCGATGGCGATGGCCCTCGTCTTC
TTCGCGGCAGCGGCCGGGGGGAATTCCCCGTCGGTTACCCGTTCCACGAG
AAGAGGATGCGGGTCAGCGGCGGGGAGAGACACGCCCACATGCTGAGAGG
CGAAGAAGCTGCGGCGCATCATGAGCTACCGCGTCATTTC
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