mRNA_E-fasciculatus_F_contig13638.2697.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13638.2697.1
Unique NamemRNA_E-fasciculatus_F_contig13638.2697.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13638.2697.1 vs. uniprot
Match: A0A6H5KMH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMH1_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 2.880e-16
Identity = 75/135 (55.56%), Postives = 80/135 (59.26%), Query Frame = 1 
Query:    1 QQQRQGWPRRHLLGTPXXXXXELYRLPQLDDAAAAVSLRDAGGPEPATXXXXXXXXXXPL-RKASVLDDTISLGQQHRTDADRAEPSSRLEPPLPKTEPVAAPSPKRHAGDRGDEAGNDENNNTGDNDESEMAAG 402
            Q Q+Q W   H  GT      ELYRLPQL  A       D G PEPAT  XXXXXXXX   R  SV DDT SL QQH TDAD    SSRLEPP+ K+EPV APSP+R AG RGDE   D+       D SEMA G
Sbjct:  317 QHQQQRWRGTHEWGTLPPAPPELYRLPQLGKAVP----HDVGVPEPATPSXXXXXXXXXXXRNTSVSDDTPSLEQQH-TDADS---SSRLEPPIAKSEPVEAPSPERPAGQRGDEV--DDKGAGAGVDGSEMAGG 441
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BLAST of mRNA_E-fasciculatus_F_contig13638.2697.1 vs. uniprot
Match: D7FWU9_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWU9_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 1.120e-11
Identity = 43/64 (67.19%), Postives = 48/64 (75.00%), Query Frame = 1 
Query:  181 RKASVLDDTISLGQQHRTDADRAEPSSRLEPPLPKTEPVAAPSPKRHAGDRGDEAGNDENNNTG 372
            RKASVLDDT SL Q+H TDAD    SSRL PPL K+EPV APSP+RHAG RGDE    ++N TG
Sbjct:  121 RKASVLDDTSSLQQEH-TDADS---SSRLRPPLAKSEPVEAPSPERHAGQRGDEV---DDNGTG 177
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13638.2697.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KMH1_9PHAE2.880e-1655.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWU9_ECTSI1.120e-1167.19EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13638contigE-fasciculatus_F_contig13638:2124..2553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size430
Cds size429
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927860.0713987-CDS-E-fasciculatus_F_contig13638:2123..25521622927860.0713987-CDS-E-fasciculatus_F_contig13638:2123..2552Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13638 2124..2552 +
1695995726.9848242-CDS-E-fasciculatus_F_contig13638:2123..25521695995726.9848242-CDS-E-fasciculatus_F_contig13638:2123..2552Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13638 2124..2552 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13638.2697.1prot_E-fasciculatus_F_contig13638.2697.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13638 2124..2552 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13638.2697.1

>prot_E-fasciculatus_F_contig13638.2697.1 ID=prot_E-fasciculatus_F_contig13638.2697.1|Name=mRNA_E-fasciculatus_F_contig13638.2697.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=143bp
QQQRQGWPRRHLLGTPPPPPPELYRLPQLDDAAAAVSLRDAGGPEPATPP
PPSPPSPPPLRKASVLDDTISLGQQHRTDADRAEPSSRLEPPLPKTEPVA
APSPKRHAGDRGDEAGNDENNNTGDNDESEMAAGGQKKHPPDS
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mRNA from alignment at E-fasciculatus_F_contig13638:2124..2553+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13638.2697.1 ID=mRNA_E-fasciculatus_F_contig13638.2697.1|Name=mRNA_E-fasciculatus_F_contig13638.2697.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=430bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13638:2124..2553+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGCAGCAACGTCAGGGGTGGCCGCGAAGGCACTTGCTGGGGACGCCTCC
CCCTCCTCCCCCCGAGCTGTACAGGCTCCCCCAGCTCGACGACGCGGCTG
CTGCTGTTTCCCTCCGTGACGCCGGCGGGCCAGAACCAGCTACCCCCCCC
CCGCCGTCGCCGCCGTCGCCGCCGCCGCTCAGGAAGGCGTCGGTTCTAGA
CGATACTATCTCCCTAGGGCAACAGCATCGCACGGACGCCGACCGCGCCG
AGCCGTCTTCCCGACTAGAGCCACCGCTGCCCAAGACGGAGCCGGTGGCA
GCGCCAAGCCCCAAGCGGCATGCAGGGGATCGAGGAGACGAGGCCGGCAA
CGACGAAAACAACAACACCGGGGATAATGATGAGTCCGAGATGGCGGCCG
GGGGGCAAAAGAAGCACCCACCGGATTCGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13638:2124..2553+

>mRNA_E-fasciculatus_F_contig13638.2697.1 ID=mRNA_E-fasciculatus_F_contig13638.2697.1|Name=mRNA_E-fasciculatus_F_contig13638.2697.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=858bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13638:2124..2553+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGCAGCAACGTCAGGGGTGGCCGCGAAGGCACTTGCTGGGGACGCCTCC
CCCTCCTCCCCCCGAGCTGTACAGGCTCCCCCAGCTCGACGACGCGGCTG
CTGCTGTTTCCCTCCGTGACGCCGGCGGGCCAGAACCAGCTACCCCCCCC
CCGCCGTCGCCGCCGTCGCCGCCGCCGCTCAGGAAGGCGTCGGTTCTAGA
CGATACTATCTCCCTAGGGCAACAGCATCGCACGGACGCCGACCGCGCCG
AGCCGTCTTCCCGACTAGAGCCACCGCTGCCCAAGACGGAGCCGGTGGCA
GCGCCAAGCCCCAAGCGGCATGCAGGGGATCGAGGAGACGAGGCCGGCAA
CGACGAAAACAACAACACCGGGGATAATGATGAGTCCGAGATGGCGGCCG
GGGGGCAAAAGAAGCACCCACCGGATTCGCAGCAGCAACGTCAGGGGTGG
CCGCGAAGGCACTTGCTGGGGACGCCTCCCCCTCCTCCCCCCGAGCTGTA
CAGGCTCCCCCAGCTCGACGACGCGGCTGCTGCTGTTTCCCTCCGTGACG
CCGGCGGGCCAGAACCAGCTACCCCCCCCCCGCCGTCGCCGCCGTCGCCG
CCGCCGCTCAGGAAGGCGTCGGTTCTAGACGATACTATCTCCCTAGGGCA
ACAGCATCGCACGGACGCCGACCGCGCCGAGCCGTCTTCCCGACTAGAGC
CACCGCTGCCCAAGACGGAGCCGGTGGCAGCGCCAAGCCCCAAGCGGCAT
GCAGGGGATCGAGGAGACGAGGCCGGCAACGACGAAAACAACAACACCGG
GGATAATGATGAGTCCGAGATGGCGGCCGGGGGGCAAAAGAAGCACCCAC
CGGATTCG
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