mRNA_E-fasciculatus_F_contig13637.2695.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13637.2695.1
Unique NamemRNA_E-fasciculatus_F_contig13637.2695.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13637.2695.1 vs. uniprot
Match: D7G1H4_ECTSI (Possibly a dual-specificity PK n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1H4_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 6.680e-39
Identity = 93/135 (68.89%), Postives = 104/135 (77.04%), Query Frame = 1 
Query:    1 MCQVAEEDEDMSFTIETGSGRPMVP---ATAAGSGNSILGGRRQGGENAASRNGTGVAAKDSGGTAAAAALPVGEDSPLSACGSSG-RDPRLFPAERGGSKGDLTPQMGSERTGIRDRGGGGVGSERVGEASSSS 393
            M QVAEEDEDMS TI TGSGRPMVP   A  AGSG ++ G   QGGEN+ASRNGTGVAA++ GGT AA ALPVGE+SP S CGSS  R P +F AE GG KGDLTPQ+GSERT   DRGGGG GSE +G+ +SSS
Sbjct:  256 MHQVAEEDEDMSLTIGTGSGRPMVPVMTAGGAGSGGNLRG-LSQGGENSASRNGTGVAAQNPGGTPAATALPVGEESPWSTCGSSSSRGPGVFSAEGGGLKGDLTPQVGSERTDKSDRGGGGAGSEGLGDGASSS 389
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BLAST of mRNA_E-fasciculatus_F_contig13637.2695.1 vs. uniprot
Match: A0A6H5LCV9_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCV9_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 6.240e-19
Identity = 69/138 (50.00%), Postives = 78/138 (56.52%), Query Frame = 1 
Query:    1 MCQVAEEDEDMSFTIETGSGRPMVPATA---AGSGNSILGGRRQGGENAASRNGTGVAAKDSGGTAAAAALPVGEDSPLSACGSSGR-----DPRLFPAERGGSKGDLTPQMGSERTGIRDRGGGGVGSERVGEASSS 390
            M +VAEEDEDMS TI TGSGRPMVP      AGSG ++ G R+                        AAALPV E SPLSAC SS       DPR+F AE GGSKGDL   +GS+ T   DRGGG  GSE +G+  SS
Sbjct:  592 MYEVAEEDEDMSLTIGTGSGRPMVPVMTGGGAGSGGNLRGRRQGXXXXXXXXXXXXXXXXXXXXXXXAAALPVCEHSPLSACVSSXXXXXXXDPRVFSAEEGGSKGDLRANVGSKWTDNSDRGGGSAGSEGLGDGGSS 729
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13637.2695.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G1H4_ECTSI6.680e-3968.89Possibly a dual-specificity PK n=1 Tax=Ectocarpus ... [more]
A0A6H5LCV9_9PHAE6.240e-1950.00Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13637contigE-fasciculatus_F_contig13637:2331..2726 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionDual-specificity protein kinase
Ec32 orthologEc-07_001020.1
Hectar predicted targeting categoryother localisation
Exons1
Model size397
Cds size396
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927860.0222132-CDS-E-fasciculatus_F_contig13637:2330..27261622927860.0222132-CDS-E-fasciculatus_F_contig13637:2330..2726Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13637 2331..2726 +
1695995726.975453-CDS-E-fasciculatus_F_contig13637:2330..27261695995726.975453-CDS-E-fasciculatus_F_contig13637:2330..2726Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13637 2331..2726 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13637.2695.1prot_E-fasciculatus_F_contig13637.2695.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13637 2331..2726 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13637.2695.1

>prot_E-fasciculatus_F_contig13637.2695.1 ID=prot_E-fasciculatus_F_contig13637.2695.1|Name=mRNA_E-fasciculatus_F_contig13637.2695.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=132bp
MCQVAEEDEDMSFTIETGSGRPMVPATAAGSGNSILGGRRQGGENAASRN
GTGVAAKDSGGTAAAAALPVGEDSPLSACGSSGRDPRLFPAERGGSKGDL
TPQMGSERTGIRDRGGGGVGSERVGEASSSSG
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mRNA from alignment at E-fasciculatus_F_contig13637:2331..2726+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13637.2695.1 ID=mRNA_E-fasciculatus_F_contig13637.2695.1|Name=mRNA_E-fasciculatus_F_contig13637.2695.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=396bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13637:2331..2726+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTGCCAGGTTGCCGAGGAGGACGAAGACATGAGCTTCACCATCGAGAC
CGGAAGCGGACGGCCTATGGTCCCCGCCACGGCGGCGGGGAGCGGCAACA
GTATTCTCGGAGGGCGGCGCCAGGGCGGCGAGAATGCGGCCTCCCGAAAC
GGTACCGGTGTCGCCGCAAAAGACTCCGGGGGCACGGCGGCGGCCGCCGC
ATTGCCCGTGGGCGAGGATTCACCCTTGTCGGCATGTGGGAGCAGCGGCA
GGGACCCCCGACTTTTTCCCGCCGAGAGGGGGGGGTCGAAGGGAGATTTG
ACGCCGCAGATGGGCTCTGAGCGGACGGGTATCAGAGACCGGGGCGGAGG
CGGTGTTGGCAGCGAGCGGGTAGGCGAGGCCAGCTCCTCAAGTGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13637:2331..2726+

>mRNA_E-fasciculatus_F_contig13637.2695.1 ID=mRNA_E-fasciculatus_F_contig13637.2695.1|Name=mRNA_E-fasciculatus_F_contig13637.2695.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=792bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13637:2331..2726+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTGCCAGGTTGCCGAGGAGGACGAAGACATGAGCTTCACCATCGAGAC
CGGAAGCGGACGGCCTATGGTCCCCGCCACGGCGGCGGGGAGCGGCAACA
GTATTCTCGGAGGGCGGCGCCAGGGCGGCGAGAATGCGGCCTCCCGAAAC
GGTACCGGTGTCGCCGCAAAAGACTCCGGGGGCACGGCGGCGGCCGCCGC
ATTGCCCGTGGGCGAGGATTCACCCTTGTCGGCATGTGGGAGCAGCGGCA
GGGACCCCCGACTTTTTCCCGCCGAGAGGGGGGGGTCGAAGGGAGATTTG
ACGCCGCAGATGGGCTCTGAGCGGACGGGTATCAGAGACCGGGGCGGAGG
CGGTGTTGGCAGCGAGCGGGTAGGCGAGGCCAGCTCCTCAAGTGGGATGT
GCCAGGTTGCCGAGGAGGACGAAGACATGAGCTTCACCATCGAGACCGGA
AGCGGACGGCCTATGGTCCCCGCCACGGCGGCGGGGAGCGGCAACAGTAT
TCTCGGAGGGCGGCGCCAGGGCGGCGAGAATGCGGCCTCCCGAAACGGTA
CCGGTGTCGCCGCAAAAGACTCCGGGGGCACGGCGGCGGCCGCCGCATTG
CCCGTGGGCGAGGATTCACCCTTGTCGGCATGTGGGAGCAGCGGCAGGGA
CCCCCGACTTTTTCCCGCCGAGAGGGGGGGGTCGAAGGGAGATTTGACGC
CGCAGATGGGCTCTGAGCGGACGGGTATCAGAGACCGGGGCGGAGGCGGT
GTTGGCAGCGAGCGGGTAGGCGAGGCCAGCTCCTCAAGTGGG
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