mRNA_E-fasciculatus_F_contig13627.2691.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig13627.2691.1
Unique NamemRNA_E-fasciculatus_F_contig13627.2691.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig13627.2691.1 vs. uniprot
Match: A0A6H5L4S5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4S5_9PHAE)

HSP 1 Score: 150 bits (379), Expect = 1.400e-41
Identity = 83/108 (76.85%), Postives = 87/108 (80.56%), Query Frame = 1 
Query:    1 PRHDRIAWPGGKIVSNKDEALASFLRRKLDQGQTLTPEQMAMLKRMAYPNASASATPGTPASDVGTTAAAGRGKRKVRGVGHADENGGG----SVHARNLLHKLERKV 312
            P   RIAWPGGKIVSNKDEALA+FLRRK+DQGQTLTPEQM MLKRMAYPNASAS   G   S VGTTAAA +GKRKVRGVGH  EN       SV+ARNLLHKLERKV
Sbjct:   32 PLPKRIAWPGGKIVSNKDEALANFLRRKVDQGQTLTPEQMTMLKRMAYPNASASVPSG--GSGVGTTAAAAKGKRKVRGVGHVYENSXXXXXXSVYARNLLHKLERKV 137
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BLAST of mRNA_E-fasciculatus_F_contig13627.2691.1 vs. uniprot
Match: D8LKQ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKQ8_ECTSI)

HSP 1 Score: 148 bits (373), Expect = 4.060e-41
Identity = 82/109 (75.23%), Postives = 87/109 (79.82%), Query Frame = 1 
Query:    1 PRHDRIAWPGGKIVSNKDEALASFLRRKLDQGQTLTPEQMAMLKRMAYPNASASATPGTPASDVG-TTAAAGRGKRKVRGVGHADENGGG----SVHARNLLHKLERKV 312
            P   RIAWPGGKIVSNKDEALA+FLRRK+DQGQTLTPEQMAML+RMAYPN S S  PG   S VG TT AA RGKRKVRGVGH  EN GG    SV+ARNLLHKL RK+
Sbjct:   32 PLPKRIAWPGGKIVSNKDEALANFLRRKVDQGQTLTPEQMAMLRRMAYPNTSVSVPPG--GSGVGGTTTAAARGKRKVRGVGHVYENSGGXXXGSVYARNLLHKLGRKI 138
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BLAST of mRNA_E-fasciculatus_F_contig13627.2691.1 vs. uniprot
Match: A0A6H5LBX8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBX8_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 5.750e-14
Identity = 45/53 (84.91%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:  307 KVAGAPDPFEAASGNTGGVVGNFHRLAGTSKRG---RRKVDLSSLKSGGTMAG 456
            KVAGAPDPFEAASGN GGV GNF  L GTSKRG   RRKVDLSSLKSGGTMAG
Sbjct:    3 KVAGAPDPFEAASGN-GGVGGNFQMLTGTSKRGMAGRRKVDLSSLKSGGTMAG 54
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BLAST of mRNA_E-fasciculatus_F_contig13627.2691.1 vs. uniprot
Match: A0A4D9D0E7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D0E7_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 6.090e-6
Identity = 27/48 (56.25%), Postives = 33/48 (68.75%), Query Frame = 1 
Query:    1 PRHDRIAWPGGKIVSNKDEALASFLRRKLDQGQ-TLTPEQMAMLKRMA 141
            P   RIAW GGKI SN++EA   FLRRK  QG    TPEQ+ +L+R+A
Sbjct:   30 PPPRRIAWAGGKITSNREEATLQFLRRKQQQGNHVFTPEQLVLLRRLA 77
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BLAST of mRNA_E-fasciculatus_F_contig13627.2691.1 vs. uniprot
Match: A0A8K1CFQ8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CFQ8_PYTOL)

HSP 1 Score: 52.8 bits (125), Expect = 7.950e-5
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:   13 RIAWPGGKIVSNKDEALASFLRRKLDQGQTLTPEQMAMLK 132
            RI W GGKI SNK+EAL  F  RKL+QG   TPEQ+  ++
Sbjct:   27 RIPWSGGKIKSNKEEALRKFYARKLEQGAQFTPEQLQAME 66
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig13627.2691.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5L4S5_9PHAE1.400e-4176.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LKQ8_ECTSI4.060e-4175.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LBX8_9PHAE5.750e-1484.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4D9D0E7_9STRA6.090e-656.25Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A8K1CFQ8_PYTOL7.950e-557.50Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig13627contigE-fasciculatus_F_contig13627:106..3585 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size856
Cds size855
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig13627.2691.1prot_E-fasciculatus_F_contig13627.2691.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig13627 106..3584 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927859.6460214-CDS-E-fasciculatus_F_contig13627:105..2221622927859.6460214-CDS-E-fasciculatus_F_contig13627:105..222Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13627 106..222 +
1695995726.755036-CDS-E-fasciculatus_F_contig13627:105..2221695995726.755036-CDS-E-fasciculatus_F_contig13627:105..222Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13627 106..222 +
1622927859.6630707-CDS-E-fasciculatus_F_contig13627:634..8261622927859.6630707-CDS-E-fasciculatus_F_contig13627:634..826Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13627 635..826 +
1695995726.7695265-CDS-E-fasciculatus_F_contig13627:634..8261695995726.7695265-CDS-E-fasciculatus_F_contig13627:634..826Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13627 635..826 +
1622927859.6758811-CDS-E-fasciculatus_F_contig13627:2566..26641622927859.6758811-CDS-E-fasciculatus_F_contig13627:2566..2664Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13627 2567..2664 +
1695995726.783899-CDS-E-fasciculatus_F_contig13627:2566..26641695995726.783899-CDS-E-fasciculatus_F_contig13627:2566..2664Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13627 2567..2664 +
1622927859.693248-CDS-E-fasciculatus_F_contig13627:3068..33111622927859.693248-CDS-E-fasciculatus_F_contig13627:3068..3311Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13627 3069..3311 +
1695995726.7978685-CDS-E-fasciculatus_F_contig13627:3068..33111695995726.7978685-CDS-E-fasciculatus_F_contig13627:3068..3311Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13627 3069..3311 +
1622927859.7164094-CDS-E-fasciculatus_F_contig13627:3379..35841622927859.7164094-CDS-E-fasciculatus_F_contig13627:3379..3584Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13627 3380..3584 +
1695995726.8125813-CDS-E-fasciculatus_F_contig13627:3379..35841695995726.8125813-CDS-E-fasciculatus_F_contig13627:3379..3584Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig13627 3380..3584 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig13627.2691.1

>prot_E-fasciculatus_F_contig13627.2691.1 ID=prot_E-fasciculatus_F_contig13627.2691.1|Name=mRNA_E-fasciculatus_F_contig13627.2691.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=285bp
PRHDRIAWPGGKIVSNKDEALASFLRRKLDQGQTLTPEQMAMLKRMAYPN
ASASATPGTPASDVGTTAAAGRGKRKVRGVGHADENGGGSVHARNLLHKL
ERKVAGAPDPFEAASGNTGGVVGNFHRLAGTSKRGRRKVDLSSLKSGGTM
AGGGGGGERRIVADGLGGFTIATAAAATTTTTTTTTNVSSGGTPFFDLSG
EDAETASPPEQQQQQQQRTARRRFFFAGDGSDGGGGGGGDGRYPGALSRG
SDGGVRHHHRQEEKRRRERRSGRGGEREKGVLLLP
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mRNA from alignment at E-fasciculatus_F_contig13627:106..3585+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig13627.2691.1 ID=mRNA_E-fasciculatus_F_contig13627.2691.1|Name=mRNA_E-fasciculatus_F_contig13627.2691.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3480bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13627:106..3585+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCACGACACGACAGGATCGCGTGGCCCGGCGGCAAGATCGTATCCAACAA
GGACGAGGCACTAGCCAGCTTCCTTCGGCGGAAGCTAGACCAAGGCCAGA
CCCTCACTCCCGAGCAGGTGAGCCATGGGAGGAGAGGGGGACCAGGTGCT
GGGCATGCCGTCAACCAAAAGGGATTCGGATGGATATGTTCGACACACTA
TCTACCTTGGGAGAGCCGACTCGATGCTCCTTCCGTCTCTTGATAGCAGC
TATGCTAGCTCCAAGCGATGCGCTGTGTGTGCATACAACAGTGTGCAACG
CGTACAGCAGCACCGAGAAGTAGTGTTGCTTCTACGACGACTTTTTTGGT
GCCGTGATCAACGTGGCTTTTTCTTTTTTCTGTCTTTTTTTCTGAGATAT
CCAGCATCACGAGATAGTCATCAAACGAGAGCTTTTCCTTTTTCCGACGA
AATTTCTCCGCGTAACTTTTCAGTTTTTTGGCGTGTTTTAAGTCAATCCT
GCGTCTACCGACCCGAACCGAACGAGCAGATGGCCATGCTTAAGAGGATG
GCGTACCCGAACGCGTCAGCATCGGCAACGCCAGGCACTCCCGCTTCCGA
CGTTGGCACGACGGCTGCTGCGGGTAGAGGCAAGAGAAAAGTGCGCGGAG
TTGGGCACGCAGACGAGAACGGCGGCGGAAGTGTTCATGCTCGAAACCTG
CTGCACAAACTAGAGCGCAAGGTAAGGGAAAGGGCGCAAGCACGGGATCC
CCCAGGCGGAGGGGGCGGGGGGGAGTTTGTGCGAGGGCGAAGTCGTCGTT
CGAGTGTGGTCGTCCTGGCGGAGAGAAAAGGAAAGCTACTACATAGCATG
CGGGGTTTTCCGCCTTTACGTCGCAGCCCCCCATTCGCGTTCATCTTCCC
GGCCAAAGAACAAGGAACATTCTGAGGAACATTCTGAGGAACATTCTGAG
GAACATTCTGAGGAACGGGAGCCGGCATCATTGTTGCTCGCGTTTTGCGT
GCTTGCTTGCTTGCCCGAAAGATGGTCACCTAAGAGGAAAGAGACGTCTA
GAGCGGAGAGAGCCAGCCTGCCTGCCTGCCTGCCCGCCTGGGTGCCTTCC
TATGCTCTTTCGAGCTACACCGCTACCATGTACCGTAGAAGGTGGTTGTA
CACGGCTTGTTCCGTGGAGGGGGTTGGAAAAGCCGGAGAAACGGTACAGC
ACGGCAGGTCAAAGGCGTGGTTGTGTGTGGGTGCCCTCTCAAACGCAAAA
TCGATGGAGACACAGCACCCCCGCAGCCCCCGTGCAGGCAGCCGCGGGTT
CGCGGGATGCACTCCACGAAAGCCGAGAGAGAAAAAAGAGATGGGGACCA
AAGTTTGTAACGGGGGCAAGGGAGAAGAGAAGCAACAAAGAAGAACGGGG
GTCGTCCAAAGGGAAAGGGGACATGGAGTGAAGCCGGCTTGTATCGCACG
CGACCCTACGGCAAAGCTTGCGGGATACCTGGACACACACCACCCACCCA
TCCATCCACATGCGGGAGTACTACTTTCGACGTGTAGACCGACAGCTCGG
GCCTTCAACCAAGAAAACACGCAAAAGTCATGCTATCCCCCGGATTTCAA
TCCACAGCGACGACAGCCAGCCGTGTTTTTTGTGTCCGCCGCCTCTACGC
GCCCAACACGTGGTCTGGGAAACGCGGGGGGGGGCTTGAGAGCGCGCTGC
TGACGCGTGTGCCGCGTGATTGCCCCCGCCGTATGGGCGTAGAGCAGCAG
TGTCGTGGTCTTGTGGTTAGCCGTTATCGCTCCCTCTCCCTAGCTAAATA
GCACCGACGACGGCCGATCCAAGTGACAATGGCAAGCACAGGTACGCTCT
GGTTGGTGAGCTTTTCGGCAGATGCATGCATGTGTTCCGCGGTGTGCCTA
CGCGGACGGACGGACGGCTTGTGTGTGTGCCTGGTATGTGTGTGTACATA
TTTCTTTCAATAACATCGACCGCGCTACCCGGCTGACCTATGGAAAGACG
TCAGTCTCAGTCCGGCGAAACACTGGAATCGCGTTCTATTTCGAGGTCTT
CAGTAGTATTGGACCCCGTGTGAGGGAAGTGTGTGCATGTGCATGTATTT
CTTAATTTTCATCGAGCGCTCTTAAAGATACGTACGTCATTCTTGTTGTG
GCGGGAAAATTAACCGCGAACGAGCACGTCTTTGCGTGTGTGCCCCACGC
GTGTGTACTTCTTCCGTTGGCATCGTCCTTGCCACCCGGACGACTTTTGA
GAAAGAAGACGCCGAGATCTCCAAAAAATACAAAACAAGACGCGTGTTCC
GCTTCCTCCTTTCAGGGCCAGCCCCCCCGGTTTGAGGGGAACGGACAGAG
GGGACGAGTTCATGTTAGCACAGTTCACCCAGCCTGTGGGCGCACACGCG
CCGCGAACTCGCATCATCATTTGTGTGCTGTTTGCTCTCTCTTTTTTTTT
TTACATTGAAGGTGGCCGGTGCTCCGGACCCATTCGAAGCGGCAAGCGGC
AACACCGGCGGCGTTGTGGGTAATTTCCACAGGCTGGCGGGGACGTCGAA
AAGGGGCAGGTGAATAACGAACGAGGACACAACATGAGGCGGGACATGGC
TTAACTCCCCATAGTCAGGAAACAGCTCCTCCGCAACGGGGAAGGGCCAG
TAGGCGAAACCGTTTCGGACATGGCCCATGAAAGCGGTAATACAGTACGA
CACGGCACAAGTACATTGTACAAGAATTCAGTACGCCCCTAAATATATGC
CCGTTGCCGGCAAGCAGCGGCCGAGCGCCGTCCCCAACGGAGGTTAGCAT
ATTAGCGGCGCTCACGCCACCAGCCGCGCTCGGGTACGCTTATTGGCTGA
AAGACGCCCGCTATACCTATCTCTTGGCCTCTTCTTAGCCCCCCCCCGCC
CTCCCCCCCGGCGCGTGTTTGTTCTTGACCCATTTTCCCGCCGCCGCTGC
TGTGTTTGAGCAGGCGCAAGGTGGACCTGTCTTCCCTAAAGAGCGGCGGA
ACCATGGCCGGGGGTGGAGGTGGGGGGGAACGGCGAATCGTCGCCGATGG
ACTGGGCGGTTTCACGATCGCAACGGCGGCGGCGGCGACAACGACGACGA
CGACGACGACAACCAATGTATCTTCAGGGGGCACCCCCTTCTTCGACCTT
AGTGGTGAAGACGCGGAAACGGCGTCACCCCCAGAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAACAGCAGCGCGGGTGGACCAACAACAAGC
GCCTACGGGTTGCTGGCGGCGGAGGCGGACGGCTCGGCGCCGCTTCTTTT
TCGCCGGGGACGGCAGCGACGGCGGTGGTGGCGGCGGCGGCGACGGCCGA
TATCCCGGCGCTTTATCGCGAGGCAGTGACGGGGGCGTTCGGCATCACCA
CCGGCAAGAAGAAAAAAGGCGGCGGGAAAGGAGGAGCGGCAGGGGGGGCG
AACGGGAAAAGGGGGTCCTCCTCCTCCCAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig13627:106..3585+

>mRNA_E-fasciculatus_F_contig13627.2691.1 ID=mRNA_E-fasciculatus_F_contig13627.2691.1|Name=mRNA_E-fasciculatus_F_contig13627.2691.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1710bp|location=Sequence derived from alignment at E-fasciculatus_F_contig13627:106..3585+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCACGACACGACAGGATCGCGTGGCCCGGCGGCAAGATCGTATCCAACAA
GGACGAGGCACTAGCCAGCTTCCTTCGGCGGAAGCTAGACCAAGGCCAGA
CCCTCACTCCCGAGCAGCCACGACACGACAGGATCGCGTGGCCCGGCGGC
AAGATCGTATCCAACAAGGACGAGGCACTAGCCAGCTTCCTTCGGCGGAA
GCTAGACCAAGGCCAGACCCTCACTCCCGAGCAGATGGCCATGCTTAAGA
GGATGGCGTACCCGAACGCGTCAGCATCGGCAACGCCAGGCACTCCCGCT
TCCGACGTTGGCACGACGGCTGCTGCGGGTAGAGGCAAGAGAAAAGTGCG
CGGAGTTGGGCACGCAGACGAGAACGGCGGCGGAAGTGTTCATGCTCGAA
ACCTGCTGCACAAACTAGAGCGCAAGATGGCCATGCTTAAGAGGATGGCG
TACCCGAACGCGTCAGCATCGGCAACGCCAGGCACTCCCGCTTCCGACGT
TGGCACGACGGCTGCTGCGGGTAGAGGCAAGAGAAAAGTGCGCGGAGTTG
GGCACGCAGACGAGAACGGCGGCGGAAGTGTTCATGCTCGAAACCTGCTG
CACAAACTAGAGCGCAAGGTGGCCGGTGCTCCGGACCCATTCGAAGCGGC
AAGCGGCAACACCGGCGGCGTTGTGGGTAATTTCCACAGGCTGGCGGGGA
CGTCGAAAAGGGGCAGGTGGCCGGTGCTCCGGACCCATTCGAAGCGGCAA
GCGGCAACACCGGCGGCGTTGTGGGTAATTTCCACAGGCTGGCGGGGACG
TCGAAAAGGGGCAGGCGCAAGGTGGACCTGTCTTCCCTAAAGAGCGGCGG
AACCATGGCCGGGGGTGGAGGTGGGGGGGAACGGCGAATCGTCGCCGATG
GACTGGGCGGTTTCACGATCGCAACGGCGGCGGCGGCGACAACGACGACG
ACGACGACGACAACCAATGTATCTTCAGGGGGCACCCCCTTCTTCGACCT
TAGTGGTGAAGACGCGGAAACGGCGTCACCCCCAGAGCAGCAGCAGCAGC
AGCAGCAGCGCAAGGTGGACCTGTCTTCCCTAAAGAGCGGCGGAACCATG
GCCGGGGGTGGAGGTGGGGGGGAACGGCGAATCGTCGCCGATGGACTGGG
CGGTTTCACGATCGCAACGGCGGCGGCGGCGACAACGACGACGACGACGA
CGACAACCAATGTATCTTCAGGGGGCACCCCCTTCTTCGACCTTAGTGGT
GAAGACGCGGAAACGGCGTCACCCCCAGAGCAGCAGCAGCAGCAGCAGCA
GCGGACGGCTCGGCGCCGCTTCTTTTTCGCCGGGGACGGCAGCGACGGCG
GTGGTGGCGGCGGCGGCGACGGCCGATATCCCGGCGCTTTATCGCGAGGC
AGTGACGGGGGCGTTCGGCATCACCACCGGCAAGAAGAAAAAAGGCGGCG
GGAAAGGAGGAGCGGCAGGGGGGGCGAACGGGAAAAGGGGGTCCTCCTCC
TCCCAGCGGACGGCTCGGCGCCGCTTCTTTTTCGCCGGGGACGGCAGCGA
CGGCGGTGGTGGCGGCGGCGGCGACGGCCGATATCCCGGCGCTTTATCGC
GAGGCAGTGACGGGGGCGTTCGGCATCACCACCGGCAAGAAGAAAAAAGG
CGGCGGGAAAGGAGGAGCGGCAGGGGGGGCGAACGGGAAAAGGGGGTCCT
CCTCCTCCCA
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